data_4K5Y # _model_server_result.job_id E6PDBXdz7TQynfvFdlRNmQ _model_server_result.datetime_utc '2024-11-27 00:05:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":501}' # _entry.id 4K5Y # _exptl.entry_id 4K5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K5Y _cell.length_a 86.559 _cell.length_b 123.968 _cell.length_c 166.834 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,T 1 1 B,I,J,K,L,M,N,O,P,Q,U 2 1 C,R,S 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 86 A CYS 188 1_555 A SG CYS 313 A CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf2 B SG CYS 86 B CYS 188 1_555 B SG CYS 313 B CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf3 C SG CYS 86 C CYS 188 1_555 C SG CYS 313 C CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 382 n n C10 C9 OLC doub 383 n n C10 C11 OLC sing 384 n n C9 C8 OLC sing 385 n n C17 C16 OLC sing 386 z n C11 C12 OLC sing 387 n n C8 C7 OLC sing 388 n n C24 C22 OLC sing 389 n n C24 O25 OLC sing 390 n n C16 C15 OLC sing 391 n n C12 C13 OLC sing 392 n n C7 C6 OLC sing 393 n n C15 C14 OLC sing 394 n n C13 C14 OLC sing 395 n n C6 C5 OLC sing 396 n n C5 C4 OLC sing 397 n n C4 C3 OLC sing 398 n n C3 C2 OLC sing 399 n n C2 C1 OLC sing 400 n n C21 C22 OLC sing 401 n n C21 O20 OLC sing 402 n n C1 O19 OLC doub 403 n n C1 O20 OLC sing 404 n n C22 O23 OLC sing 405 n n C18 H18 OLC sing 406 n n C18 H18A OLC sing 407 n n C18 H18B OLC sing 408 n n C10 H10 OLC sing 409 n n C9 H9 OLC sing 410 n n C17 H17 OLC sing 411 n n C17 H17A OLC sing 412 n n C11 H11 OLC sing 413 n n C11 H11A OLC sing 414 n n C8 H8 OLC sing 415 n n C8 H8A OLC sing 416 n n C24 H24 OLC sing 417 n n C24 H24A OLC sing 418 n n C16 H16 OLC sing 419 n n C16 H16A OLC sing 420 n n C12 H12 OLC sing 421 n n C12 H12A OLC sing 422 n n C7 H7 OLC sing 423 n n C7 H7A OLC sing 424 n n C15 H15 OLC sing 425 n n C15 H15A OLC sing 426 n n C13 H13 OLC sing 427 n n C13 H13A OLC sing 428 n n C6 H6 OLC sing 429 n n C6 H6A OLC sing 430 n n C14 H14 OLC sing 431 n n C14 H14A OLC sing 432 n n C5 H5 OLC sing 433 n n C5 H5A OLC sing 434 n n C4 H4 OLC sing 435 n n C4 H4A OLC sing 436 n n C3 H3 OLC sing 437 n n C3 H3A OLC sing 438 n n C2 H2 OLC sing 439 n n C2 H2A OLC sing 440 n n C21 H21 OLC sing 441 n n C21 H21A OLC sing 442 n n C22 H22 OLC sing 443 n n O25 HO25 OLC sing 444 n n O23 HO23 OLC sing 445 n n # _atom_sites.entry_id 4K5Y _atom_sites.fract_transf_matrix[1][1] 0.011553 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005994 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 1Q5 A 1 401 401 1Q5 1Q5 . E 3 OLA A 1 501 501 OLA OLA . F 4 OLC A 1 502 502 OLC OLC . G 4 OLC A 1 503 503 OLC OLC . H 5 SO4 A 1 504 504 SO4 SO4 . I 2 1Q5 B 1 401 401 1Q5 1Q5 . J 4 OLC B 1 501 501 OLC OLC . K 6 PGW B 1 502 502 PGW PGW . L 6 PGW B 1 503 503 PGW PGW . M 6 PGW B 1 504 504 PGW PGW . N 7 1PE B 1 505 505 1PE 1PE . O 5 SO4 B 1 506 506 SO4 SO4 . P 5 SO4 B 1 507 507 SO4 SO4 . Q 5 SO4 B 1 508 508 SO4 SO4 . R 2 1Q5 C 1 401 401 1Q5 1Q5 . S 3 OLA C 1 501 501 OLA OLA . T 8 HOH A 1 601 601 HOH HOH . T 8 HOH A 2 602 602 HOH HOH . T 8 HOH A 3 603 603 HOH HOH . T 8 HOH A 4 604 604 HOH HOH . U 8 HOH B 1 601 601 HOH HOH . U 8 HOH B 2 602 602 HOH HOH . U 8 HOH B 3 603 603 HOH HOH . U 8 HOH B 4 604 604 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . J 4 -45.002 4.579 30.014 1 25.82 ? C18 OLC 501 B 1 HETATM 2 C C10 OLC . . . J 4 -49.687 0.399 23.22 1 55.64 ? C10 OLC 501 B 1 HETATM 3 C C9 OLC . . . J 4 -50.577 0.055 22.323 1 55.83 ? C9 OLC 501 B 1 HETATM 4 C C17 OLC . . . J 4 -45.911 4.661 28.787 1 33.02 ? C17 OLC 501 B 1 HETATM 5 C C11 OLC . . . J 4 -49.916 1.63 24.061 1 57.21 ? C11 OLC 501 B 1 HETATM 6 C C8 OLC . . . J 4 -51.691 1.016 21.998 1 59.47 ? C8 OLC 501 B 1 HETATM 7 C C24 OLC . . . J 4 -57.848 4.617 14.461 1 74.36 ? C24 OLC 501 B 1 HETATM 8 C C16 OLC . . . J 4 -46.513 3.281 28.518 1 40.27 ? C16 OLC 501 B 1 HETATM 9 C C12 OLC . . . J 4 -49.112 1.54 25.36 1 50.73 ? C12 OLC 501 B 1 HETATM 10 C C7 OLC . . . J 4 -52.092 0.943 20.525 1 62.53 ? C7 OLC 501 B 1 HETATM 11 C C15 OLC . . . J 4 -47.21 3.268 27.155 1 35.36 ? C15 OLC 501 B 1 HETATM 12 C C13 OLC . . . J 4 -47.645 1.888 25.109 1 44.04 ? C13 OLC 501 B 1 HETATM 13 C C6 OLC . . . J 4 -53.168 2.003 20.269 1 57.42 ? C6 OLC 501 B 1 HETATM 14 C C14 OLC . . . J 4 -46.897 1.949 26.442 1 38.28 ? C14 OLC 501 B 1 HETATM 15 C C5 OLC . . . J 4 -53.975 1.634 19.022 1 65.09 ? C5 OLC 501 B 1 HETATM 16 C C4 OLC . . . J 4 -53.212 2.04 17.758 1 68.67 ? C4 OLC 501 B 1 HETATM 17 C C3 OLC . . . J 4 -53.999 1.551 16.541 1 72.84 ? C3 OLC 501 B 1 HETATM 18 C C2 OLC . . . J 4 -53.342 2.052 15.253 1 73.56 ? C2 OLC 501 B 1 HETATM 19 C C21 OLC . . . J 4 -55.911 3.159 13.833 1 73.14 ? C21 OLC 501 B 1 HETATM 20 C C1 OLC . . . J 4 -54.16 1.58 14.08 1 80.03 ? C1 OLC 501 B 1 HETATM 21 C C22 OLC . . . J 4 -57.437 3.277 13.837 1 79.23 ? C22 OLC 501 B 1 HETATM 22 O O19 OLC . . . J 4 -53.608 0.981 13.127 1 83.66 ? O19 OLC 501 B 1 HETATM 23 O O25 OLC . . . J 4 -58.052 4.483 15.872 1 70.1 ? O25 OLC 501 B 1 HETATM 24 O O23 OLC . . . J 4 -57.914 3.227 12.489 1 58.28 ? O23 OLC 501 B 1 HETATM 25 O O20 OLC . . . J 4 -55.397 1.774 14.078 1 74.95 ? O20 OLC 501 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #