data_4K5Y # _model_server_result.job_id YFoNogXLx9-vZfDn2vgDzg _model_server_result.datetime_utc '2024-11-14 13:05:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":505}' # _entry.id 4K5Y # _exptl.entry_id 4K5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K5Y _cell.length_a 86.559 _cell.length_b 123.968 _cell.length_c 166.834 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,T 1 1 B,I,J,K,L,M,N,O,P,Q,U 2 1 C,R,S 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 86 A CYS 188 1_555 A SG CYS 313 A CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf2 B SG CYS 86 B CYS 188 1_555 B SG CYS 313 B CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf3 C SG CYS 86 C CYS 188 1_555 C SG CYS 313 C CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 4K5Y _atom_sites.fract_transf_matrix[1][1] 0.011553 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005994 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 1Q5 A 1 401 401 1Q5 1Q5 . E 3 OLA A 1 501 501 OLA OLA . F 4 OLC A 1 502 502 OLC OLC . G 4 OLC A 1 503 503 OLC OLC . H 5 SO4 A 1 504 504 SO4 SO4 . I 2 1Q5 B 1 401 401 1Q5 1Q5 . J 4 OLC B 1 501 501 OLC OLC . K 6 PGW B 1 502 502 PGW PGW . L 6 PGW B 1 503 503 PGW PGW . M 6 PGW B 1 504 504 PGW PGW . N 7 1PE B 1 505 505 1PE 1PE . O 5 SO4 B 1 506 506 SO4 SO4 . P 5 SO4 B 1 507 507 SO4 SO4 . Q 5 SO4 B 1 508 508 SO4 SO4 . R 2 1Q5 C 1 401 401 1Q5 1Q5 . S 3 OLA C 1 501 501 OLA OLA . T 8 HOH A 1 601 601 HOH HOH . T 8 HOH A 2 602 602 HOH HOH . T 8 HOH A 3 603 603 HOH HOH . T 8 HOH A 4 604 604 HOH HOH . U 8 HOH B 1 601 601 HOH HOH . U 8 HOH B 2 602 602 HOH HOH . U 8 HOH B 3 603 603 HOH HOH . U 8 HOH B 4 604 604 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . N 7 -79.703 0.539 20.494 1 61.05 ? OH2 1PE 505 B 1 HETATM 2 C C12 1PE . . . N 7 -80.833 0.363 19.634 1 64.83 ? C12 1PE 505 B 1 HETATM 3 C C22 1PE . . . N 7 -82.085 0.975 20.265 1 54.75 ? C22 1PE 505 B 1 HETATM 4 O OH3 1PE . . . N 7 -82.088 0.744 21.674 1 59.89 ? OH3 1PE 505 B 1 HETATM 5 C C13 1PE . . . N 7 -83.568 0.469 23.55 1 63.45 ? C13 1PE 505 B 1 HETATM 6 C C23 1PE . . . N 7 -83.426 0.979 22.117 1 61.09 ? C23 1PE 505 B 1 HETATM 7 O OH4 1PE . . . N 7 -84.658 1.125 24.194 1 56.87 ? OH4 1PE 505 B 1 HETATM 8 C C14 1PE . . . N 7 -85.612 1.561 26.355 1 52.25 ? C14 1PE 505 B 1 HETATM 9 C C24 1PE . . . N 7 -84.628 0.708 25.559 1 53.38 ? C24 1PE 505 B 1 HETATM 10 O OH5 1PE . . . N 7 -86.122 0.804 27.452 1 52.14 ? OH5 1PE 505 B 1 HETATM 11 C C15 1PE . . . N 7 -88.488 0.798 26.951 1 53.74 ? C15 1PE 505 B 1 HETATM 12 C C25 1PE . . . N 7 -87.369 1.408 27.8 1 45.43 ? C25 1PE 505 B 1 HETATM 13 O OH6 1PE . . . N 7 -89.37 0.07 27.807 1 51.27 ? OH6 1PE 505 B 1 HETATM 14 C C16 1PE . . . N 7 -90.062 -1.69 26.303 1 60.75 ? C16 1PE 505 B 1 HETATM 15 C C26 1PE . . . N 7 -89.207 -1.322 27.517 1 56.8 ? C26 1PE 505 B 1 HETATM 16 O OH7 1PE . . . N 7 -90.782 -2.898 26.569 1 66.36 ? OH7 1PE 505 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 16 #