data_4K5Z # _model_server_result.job_id H_DtS17zAFFxVEBPAcj5qw _model_server_result.datetime_utc '2024-11-13 14:39:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k5z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 4K5Z # _exptl.entry_id 4K5Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K5Z _cell.length_a 74.609 _cell.length_b 74.609 _cell.length_c 49.897 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 42 1_555 A SG CYS 46 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 123 A CYS 136 1_555 A SG CYS 188 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 154 A CYS 168 1_555 A SG CYS 167 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? covale ? covale1 A ND2 ASN 59 A ASN 72 1_555 B C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.225 ? metalc ? metalc1 A NE2 HIS 10 A HIS 25 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc2 A OE1 GLU 64 A GLU 78 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc3 C ZN ZN . A ZN 702 1_555 E O HOH . A HOH 982 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4K5Z _atom_sites.fract_transf_matrix[1][1] 0.013403 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 701 701 NAG NAG . C 3 ZN A 1 702 800 ZN ZN2 . D 4 1P7 A 1 703 990 1P7 LIG . E 5 HOH A 1 801 1 HOH HOH . E 5 HOH A 2 802 2 HOH HOH . E 5 HOH A 3 803 3 HOH HOH . E 5 HOH A 4 804 4 HOH HOH . E 5 HOH A 5 805 5 HOH HOH . E 5 HOH A 6 806 6 HOH HOH . E 5 HOH A 7 807 7 HOH HOH . E 5 HOH A 8 808 8 HOH HOH . E 5 HOH A 9 809 9 HOH HOH . E 5 HOH A 10 810 10 HOH HOH . E 5 HOH A 11 811 11 HOH HOH . E 5 HOH A 12 812 12 HOH HOH . E 5 HOH A 13 813 13 HOH HOH . E 5 HOH A 14 814 14 HOH HOH . E 5 HOH A 15 815 15 HOH HOH . E 5 HOH A 16 816 16 HOH HOH . E 5 HOH A 17 817 17 HOH HOH . E 5 HOH A 18 818 18 HOH HOH . E 5 HOH A 19 819 19 HOH HOH . E 5 HOH A 20 820 20 HOH HOH . E 5 HOH A 21 821 21 HOH HOH . E 5 HOH A 22 822 22 HOH HOH . E 5 HOH A 23 823 23 HOH HOH . E 5 HOH A 24 824 24 HOH HOH . E 5 HOH A 25 825 25 HOH HOH . E 5 HOH A 26 826 26 HOH HOH . E 5 HOH A 27 827 27 HOH HOH . E 5 HOH A 28 828 28 HOH HOH . E 5 HOH A 29 829 29 HOH HOH . E 5 HOH A 30 830 30 HOH HOH . E 5 HOH A 31 831 31 HOH HOH . E 5 HOH A 32 832 32 HOH HOH . E 5 HOH A 33 833 33 HOH HOH . E 5 HOH A 34 834 34 HOH HOH . E 5 HOH A 35 835 35 HOH HOH . E 5 HOH A 36 836 36 HOH HOH . E 5 HOH A 37 837 37 HOH HOH . E 5 HOH A 38 838 38 HOH HOH . E 5 HOH A 39 839 39 HOH HOH . E 5 HOH A 40 840 40 HOH HOH . E 5 HOH A 41 841 41 HOH HOH . E 5 HOH A 42 842 42 HOH HOH . E 5 HOH A 43 843 43 HOH HOH . E 5 HOH A 44 844 44 HOH HOH . E 5 HOH A 45 845 45 HOH HOH . E 5 HOH A 46 846 46 HOH HOH . E 5 HOH A 47 847 47 HOH HOH . E 5 HOH A 48 848 48 HOH HOH . E 5 HOH A 49 849 49 HOH HOH . E 5 HOH A 50 850 50 HOH HOH . E 5 HOH A 51 851 51 HOH HOH . E 5 HOH A 52 852 52 HOH HOH . E 5 HOH A 53 853 53 HOH HOH . E 5 HOH A 54 854 54 HOH HOH . E 5 HOH A 55 855 55 HOH HOH . E 5 HOH A 56 856 56 HOH HOH . E 5 HOH A 57 857 57 HOH HOH . E 5 HOH A 58 858 58 HOH HOH . E 5 HOH A 59 859 59 HOH HOH . E 5 HOH A 60 860 60 HOH HOH . E 5 HOH A 61 861 61 HOH HOH . E 5 HOH A 62 862 62 HOH HOH . E 5 HOH A 63 863 63 HOH HOH . E 5 HOH A 64 864 64 HOH HOH . E 5 HOH A 65 865 65 HOH HOH . E 5 HOH A 66 866 66 HOH HOH . E 5 HOH A 67 867 67 HOH HOH . E 5 HOH A 68 868 68 HOH HOH . E 5 HOH A 69 869 69 HOH HOH . E 5 HOH A 70 870 70 HOH HOH . E 5 HOH A 71 871 71 HOH HOH . E 5 HOH A 72 872 72 HOH HOH . E 5 HOH A 73 873 73 HOH HOH . E 5 HOH A 74 874 74 HOH HOH . E 5 HOH A 75 875 75 HOH HOH . E 5 HOH A 76 876 76 HOH HOH . E 5 HOH A 77 877 77 HOH HOH . E 5 HOH A 78 878 78 HOH HOH . E 5 HOH A 79 879 79 HOH HOH . E 5 HOH A 80 880 80 HOH HOH . E 5 HOH A 81 881 81 HOH HOH . E 5 HOH A 82 882 82 HOH HOH . E 5 HOH A 83 883 83 HOH HOH . E 5 HOH A 84 884 84 HOH HOH . E 5 HOH A 85 885 85 HOH HOH . E 5 HOH A 86 886 86 HOH HOH . E 5 HOH A 87 887 87 HOH HOH . E 5 HOH A 88 888 88 HOH HOH . E 5 HOH A 89 889 89 HOH HOH . E 5 HOH A 90 890 90 HOH HOH . E 5 HOH A 91 891 91 HOH HOH . E 5 HOH A 92 892 92 HOH HOH . E 5 HOH A 93 893 93 HOH HOH . E 5 HOH A 94 894 94 HOH HOH . E 5 HOH A 95 895 95 HOH HOH . E 5 HOH A 96 896 96 HOH HOH . E 5 HOH A 97 897 97 HOH HOH . E 5 HOH A 98 898 98 HOH HOH . E 5 HOH A 99 899 99 HOH HOH . E 5 HOH A 100 900 100 HOH HOH . E 5 HOH A 101 901 101 HOH HOH . E 5 HOH A 102 902 102 HOH HOH . E 5 HOH A 103 903 103 HOH HOH . E 5 HOH A 104 904 104 HOH HOH . E 5 HOH A 105 905 105 HOH HOH . E 5 HOH A 106 906 106 HOH HOH . E 5 HOH A 107 907 107 HOH HOH . E 5 HOH A 108 908 108 HOH HOH . E 5 HOH A 109 909 109 HOH HOH . E 5 HOH A 110 910 110 HOH HOH . E 5 HOH A 111 911 111 HOH HOH . E 5 HOH A 112 912 112 HOH HOH . E 5 HOH A 113 913 113 HOH HOH . E 5 HOH A 114 914 114 HOH HOH . E 5 HOH A 115 915 115 HOH HOH . E 5 HOH A 116 916 116 HOH HOH . E 5 HOH A 117 917 117 HOH HOH . E 5 HOH A 118 918 118 HOH HOH . E 5 HOH A 119 919 119 HOH HOH . E 5 HOH A 120 920 120 HOH HOH . E 5 HOH A 121 921 121 HOH HOH . E 5 HOH A 122 922 122 HOH HOH . E 5 HOH A 123 923 123 HOH HOH . E 5 HOH A 124 924 124 HOH HOH . E 5 HOH A 125 925 125 HOH HOH . E 5 HOH A 126 926 126 HOH HOH . E 5 HOH A 127 927 127 HOH HOH . E 5 HOH A 128 928 128 HOH HOH . E 5 HOH A 129 929 129 HOH HOH . E 5 HOH A 130 930 130 HOH HOH . E 5 HOH A 131 931 131 HOH HOH . E 5 HOH A 132 932 132 HOH HOH . E 5 HOH A 133 933 133 HOH HOH . E 5 HOH A 134 934 134 HOH HOH . E 5 HOH A 135 935 135 HOH HOH . E 5 HOH A 136 936 136 HOH HOH . E 5 HOH A 137 937 137 HOH HOH . E 5 HOH A 138 938 138 HOH HOH . E 5 HOH A 139 939 139 HOH HOH . E 5 HOH A 140 940 140 HOH HOH . E 5 HOH A 141 941 141 HOH HOH . E 5 HOH A 142 942 142 HOH HOH . E 5 HOH A 143 943 143 HOH HOH . E 5 HOH A 144 944 144 HOH HOH . E 5 HOH A 145 945 145 HOH HOH . E 5 HOH A 146 946 146 HOH HOH . E 5 HOH A 147 947 147 HOH HOH . E 5 HOH A 148 948 148 HOH HOH . E 5 HOH A 149 949 149 HOH HOH . E 5 HOH A 150 950 150 HOH HOH . E 5 HOH A 151 951 151 HOH HOH . E 5 HOH A 152 952 152 HOH HOH . E 5 HOH A 153 953 153 HOH HOH . E 5 HOH A 154 954 154 HOH HOH . E 5 HOH A 155 955 155 HOH HOH . E 5 HOH A 156 956 156 HOH HOH . E 5 HOH A 157 957 157 HOH HOH . E 5 HOH A 158 958 158 HOH HOH . E 5 HOH A 159 959 159 HOH HOH . E 5 HOH A 160 960 160 HOH HOH . E 5 HOH A 161 961 161 HOH HOH . E 5 HOH A 162 962 162 HOH HOH . E 5 HOH A 163 963 163 HOH HOH . E 5 HOH A 164 964 164 HOH HOH . E 5 HOH A 165 965 165 HOH HOH . E 5 HOH A 166 966 166 HOH HOH . E 5 HOH A 167 967 167 HOH HOH . E 5 HOH A 168 968 168 HOH HOH . E 5 HOH A 169 969 169 HOH HOH . E 5 HOH A 170 970 170 HOH HOH . E 5 HOH A 171 971 171 HOH HOH . E 5 HOH A 172 972 172 HOH HOH . E 5 HOH A 173 973 173 HOH HOH . E 5 HOH A 174 974 174 HOH HOH . E 5 HOH A 175 975 175 HOH HOH . E 5 HOH A 176 976 176 HOH HOH . E 5 HOH A 177 977 177 HOH HOH . E 5 HOH A 178 978 178 HOH HOH . E 5 HOH A 179 979 179 HOH HOH . E 5 HOH A 180 980 180 HOH HOH . E 5 HOH A 181 981 181 HOH HOH . E 5 HOH A 182 982 182 HOH HOH . E 5 HOH A 183 983 183 HOH HOH . E 5 HOH A 184 984 184 HOH HOH . E 5 HOH A 185 985 185 HOH HOH . E 5 HOH A 186 986 186 HOH HOH . E 5 HOH A 187 987 187 HOH HOH . E 5 HOH A 188 988 188 HOH HOH . E 5 HOH A 189 989 189 HOH HOH . E 5 HOH A 190 990 190 HOH HOH . E 5 HOH A 191 991 191 HOH HOH . E 5 HOH A 192 992 192 HOH HOH . E 5 HOH A 193 993 193 HOH HOH . E 5 HOH A 194 994 194 HOH HOH . E 5 HOH A 195 995 195 HOH HOH . E 5 HOH A 196 996 196 HOH HOH . E 5 HOH A 197 997 197 HOH HOH . E 5 HOH A 198 998 198 HOH HOH . E 5 HOH A 199 999 199 HOH HOH . E 5 HOH A 200 1000 200 HOH HOH . E 5 HOH A 201 1001 201 HOH HOH . E 5 HOH A 202 1002 202 HOH HOH . E 5 HOH A 203 1003 203 HOH HOH . E 5 HOH A 204 1004 204 HOH HOH . E 5 HOH A 205 1005 205 HOH HOH . E 5 HOH A 206 1006 206 HOH HOH . E 5 HOH A 207 1007 207 HOH HOH . E 5 HOH A 208 1008 208 HOH HOH . E 5 HOH A 209 1009 209 HOH HOH . E 5 HOH A 210 1010 210 HOH HOH . E 5 HOH A 211 1011 211 HOH HOH . E 5 HOH A 212 1012 212 HOH HOH . E 5 HOH A 213 1013 213 HOH HOH . E 5 HOH A 214 1014 214 HOH HOH . E 5 HOH A 215 1015 215 HOH HOH . E 5 HOH A 216 1016 216 HOH HOH . E 5 HOH A 217 1017 217 HOH HOH . E 5 HOH A 218 1018 218 HOH HOH . E 5 HOH A 219 1019 219 HOH HOH . E 5 HOH A 220 1020 220 HOH HOH . E 5 HOH A 221 1021 221 HOH HOH . E 5 HOH A 222 1022 222 HOH HOH . E 5 HOH A 223 1023 223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 80.599 51.746 10.201 1 40.52 ? C1 NAG 701 A 1 HETATM 2 C C2 NAG . . . B 2 81.018 52.863 11.164 1 38.22 ? C2 NAG 701 A 1 HETATM 3 C C3 NAG . . . B 2 82.187 53.653 10.579 1 46.88 ? C3 NAG 701 A 1 HETATM 4 C C4 NAG . . . B 2 83.337 52.714 10.242 1 42.69 ? C4 NAG 701 A 1 HETATM 5 C C5 NAG . . . B 2 82.854 51.61 9.306 1 45.27 ? C5 NAG 701 A 1 HETATM 6 C C6 NAG . . . B 2 83.921 50.581 9.007 1 39.55 ? C6 NAG 701 A 1 HETATM 7 C C7 NAG . . . B 2 79.171 53.6 12.595 1 37.9 ? C7 NAG 701 A 1 HETATM 8 C C8 NAG . . . B 2 78.073 54.601 12.792 1 54.33 ? C8 NAG 701 A 1 HETATM 9 N N2 NAG . . . B 2 79.909 53.747 11.489 1 40.75 ? N2 NAG 701 A 1 HETATM 10 O O3 NAG . . . B 2 82.62 54.637 11.513 1 46 ? O3 NAG 701 A 1 HETATM 11 O O4 NAG . . . B 2 84.396 53.431 9.613 1 52.8 ? O4 NAG 701 A 1 HETATM 12 O O5 NAG . . . B 2 81.748 50.906 9.898 1 36.66 ? O5 NAG 701 A 1 HETATM 13 O O6 NAG . . . B 2 84.153 49.744 10.132 1 49.29 ? O6 NAG 701 A 1 HETATM 14 O O7 NAG . . . B 2 79.375 52.688 13.397 1 50.29 ? O7 NAG 701 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #