data_4K6Z # _model_server_result.job_id vvYVdrmbcJzZix_It7WmYw _model_server_result.datetime_utc '2025-07-31 04:24:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k6z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 4K6Z # _exptl.entry_id 4K6Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 321.337 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S)-2-{[8-oxo-2-(1H-pyrazol-4-yl)-5,8-dihydropyrido[3,4-d]pyrimidin-4-yl]amino}cyclopentanecarbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K6Z _cell.length_a 168.574 _cell.length_b 42.701 _cell.length_c 44.301 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K6Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 181 A GLU 1033 1_555 A N PTR 182 A PTR 1034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale2 A C PTR 182 A PTR 1034 1_555 A N PTR 183 A PTR 1035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale3 A C PTR 183 A PTR 1035 1_555 A N THR 184 A THR 1036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C16 H15 N7 O' _chem_comp.formula_weight 321.337 _chem_comp.id 1Q3 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S)-2-{[8-oxo-2-(1H-pyrazol-4-yl)-5,8-dihydropyrido[3,4-d]pyrimidin-4-yl]amino}cyclopentanecarbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N15 C14 1Q3 sing 1 n y N15 N17 1Q3 sing 2 n y C14 C13 1Q3 doub 3 n y N17 C18 1Q3 doub 4 n y C13 C18 1Q3 sing 5 n y C13 C11 1Q3 sing 6 n n N12 C11 1Q3 doub 7 n y N12 C7 1Q3 sing 8 n y C11 N10 1Q3 sing 9 n y O6 C5 1Q3 doub 10 n n C5 C7 1Q3 sing 11 n n C5 N3 1Q3 sing 12 n n C7 C8 1Q3 doub 13 n y N10 C9 1Q3 doub 14 n y C9 C8 1Q3 sing 15 n y C9 N19 1Q3 sing 16 n n N3 C2 1Q3 doub 17 n n C8 C1 1Q3 sing 18 n n N19 C20 1Q3 sing 19 n n C2 C1 1Q3 sing 20 n n C21 C20 1Q3 sing 21 n n C21 C22 1Q3 sing 22 n n C20 C24 1Q3 sing 23 n n C22 C23 1Q3 sing 24 n n C23 C24 1Q3 sing 25 n n C24 C25 1Q3 sing 26 n n C25 N26 1Q3 trip 27 n n C1 H1 1Q3 sing 28 n n C1 H2 1Q3 sing 29 n n C2 H3 1Q3 sing 30 n n C14 H4 1Q3 sing 31 n n N15 H5 1Q3 sing 32 n n C18 H6 1Q3 sing 33 n n N19 H7 1Q3 sing 34 n n C20 H8 1Q3 sing 35 n n C21 H9 1Q3 sing 36 n n C21 H10 1Q3 sing 37 n n C22 H11 1Q3 sing 38 n n C22 H12 1Q3 sing 39 n n C23 H13 1Q3 sing 40 n n C23 H14 1Q3 sing 41 n n C24 H15 1Q3 sing 42 n n # _atom_sites.entry_id 4K6Z _atom_sites.fract_transf_matrix[1][1] 0.005932 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023419 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1Q3 A 1 1201 1 1Q3 DRG . C 3 HOH A 1 1301 1 HOH HOH . C 3 HOH A 2 1302 2 HOH HOH . C 3 HOH A 3 1303 3 HOH HOH . C 3 HOH A 4 1304 4 HOH HOH . C 3 HOH A 5 1305 5 HOH HOH . C 3 HOH A 6 1306 6 HOH HOH . C 3 HOH A 7 1307 7 HOH HOH . C 3 HOH A 8 1308 8 HOH HOH . C 3 HOH A 9 1309 9 HOH HOH . C 3 HOH A 10 1310 10 HOH HOH . C 3 HOH A 11 1311 11 HOH HOH . C 3 HOH A 12 1312 12 HOH HOH . C 3 HOH A 13 1313 13 HOH HOH . C 3 HOH A 14 1314 14 HOH HOH . C 3 HOH A 15 1315 15 HOH HOH . C 3 HOH A 16 1316 16 HOH HOH . C 3 HOH A 17 1317 17 HOH HOH . C 3 HOH A 18 1318 18 HOH HOH . C 3 HOH A 19 1319 19 HOH HOH . C 3 HOH A 20 1320 20 HOH HOH . C 3 HOH A 21 1321 21 HOH HOH . C 3 HOH A 22 1322 22 HOH HOH . C 3 HOH A 23 1323 23 HOH HOH . C 3 HOH A 24 1324 24 HOH HOH . C 3 HOH A 25 1325 25 HOH HOH . C 3 HOH A 26 1326 26 HOH HOH . C 3 HOH A 27 1327 27 HOH HOH . C 3 HOH A 28 1328 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 1Q3 . . . B 2 26.551 6.399 1.97 1 29.56 ? C1 1Q3 1201 A 1 HETATM 2 C C2 1Q3 . . . B 2 27.813 7.009 1.928 1 29.26 ? C2 1Q3 1201 A 1 HETATM 3 N N3 1Q3 . . . B 2 28.907 6.421 1.369 1 27.25 ? N3 1Q3 1201 A 1 HETATM 4 C C5 1Q3 . . . B 2 28.864 5.108 0.767 1 27.8 ? C5 1Q3 1201 A 1 HETATM 5 O O6 1Q3 . . . B 2 29.907 4.628 0.323 1 29.89 ? O6 1Q3 1201 A 1 HETATM 6 C C7 1Q3 . . . B 2 27.53 4.417 0.79 1 26.09 ? C7 1Q3 1201 A 1 HETATM 7 C C8 1Q3 . . . B 2 26.377 5.072 1.389 1 27.6 ? C8 1Q3 1201 A 1 HETATM 8 C C9 1Q3 . . . B 2 25.202 4.242 1.344 1 27.45 ? C9 1Q3 1201 A 1 HETATM 9 N N10 1Q3 . . . B 2 25.213 3.019 0.802 1 27.89 ? N10 1Q3 1201 A 1 HETATM 10 C C11 1Q3 . . . B 2 26.35 2.53 0.322 1 28.1 ? C11 1Q3 1201 A 1 HETATM 11 N N12 1Q3 . . . B 2 27.52 3.171 0.28 1 27.09 ? N12 1Q3 1201 A 1 HETATM 12 C C13 1Q3 . . . B 2 26.19 1.16 -0.077 1 28.65 ? C13 1Q3 1201 A 1 HETATM 13 C C14 1Q3 . . . B 2 27.085 0.275 -0.641 1 29.67 ? C14 1Q3 1201 A 1 HETATM 14 N N15 1Q3 . . . B 2 26.489 -0.919 -0.701 1 29.33 ? N15 1Q3 1201 A 1 HETATM 15 N N17 1Q3 . . . B 2 25.225 -0.887 -0.231 1 28.3 ? N17 1Q3 1201 A 1 HETATM 16 C C18 1Q3 . . . B 2 25.02 0.366 0.15 1 28.54 ? C18 1Q3 1201 A 1 HETATM 17 N N19 1Q3 . . . B 2 23.974 4.354 1.868 1 27.13 ? N19 1Q3 1201 A 1 HETATM 18 C C20 1Q3 . . . B 2 23.246 5.182 2.789 1 29.92 ? C20 1Q3 1201 A 1 HETATM 19 C C21 1Q3 . . . B 2 21.786 5.223 2.308 1 28.94 ? C21 1Q3 1201 A 1 HETATM 20 C C22 1Q3 . . . B 2 21.012 4.254 3.223 1 29.49 ? C22 1Q3 1201 A 1 HETATM 21 C C23 1Q3 . . . B 2 22.048 3.358 3.894 1 29.76 ? C23 1Q3 1201 A 1 HETATM 22 C C24 1Q3 . . . B 2 23.052 4.439 4.168 1 31.78 ? C24 1Q3 1201 A 1 HETATM 23 C C25 1Q3 . . . B 2 24.279 3.932 4.796 1 29.85 ? C25 1Q3 1201 A 1 HETATM 24 N N26 1Q3 . . . B 2 25.226 3.586 5.322 1 29.11 ? N26 1Q3 1201 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 437 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #