data_4K76 # _model_server_result.job_id rNwbAZbAbJC0GhM-IRfzLQ _model_server_result.datetime_utc '2024-11-05 14:38:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k76 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":101}' # _entry.id 4K76 # _exptl.entry_id 4K76 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 68.81 _cell.angle_beta 75.79 _cell.angle_gamma 87.93 _cell.entry_id 4K76 _cell.length_a 32.762 _cell.length_b 50.169 _cell.length_c 55.183 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K76 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,J,N 1 1 B,F,I,K,O 2 1 C,G,L,P 3 1 D,H,M,Q 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 44 A CYS 327 1_555 C SG CYS 44 C CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 B SG CYS 44 B CYS 327 1_555 D SG CYS 44 D CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4K76 _atom_sites.fract_transf_matrix[1][1] 0.030523 _atom_sites.fract_transf_matrix[1][2] -0.001102 _atom_sites.fract_transf_matrix[1][3] -0.007866 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019945 _atom_sites.fract_transf_matrix[2][3] -0.007793 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 GOL F 1 101 1 GOL GOL . J 4 HOH A 1 401 8 HOH HOH . J 4 HOH A 2 402 22 HOH HOH . J 4 HOH A 3 403 24 HOH HOH . J 4 HOH A 4 404 34 HOH HOH . J 4 HOH A 5 405 40 HOH HOH . J 4 HOH A 6 406 41 HOH HOH . J 4 HOH A 7 407 42 HOH HOH . J 4 HOH A 8 408 44 HOH HOH . J 4 HOH A 9 409 45 HOH HOH . J 4 HOH A 10 410 51 HOH HOH . J 4 HOH A 11 411 52 HOH HOH . J 4 HOH A 12 412 53 HOH HOH . J 4 HOH A 13 413 56 HOH HOH . J 4 HOH A 14 414 57 HOH HOH . J 4 HOH A 15 415 61 HOH HOH . J 4 HOH A 16 416 63 HOH HOH . J 4 HOH A 17 417 64 HOH HOH . J 4 HOH A 18 418 65 HOH HOH . J 4 HOH A 19 419 66 HOH HOH . J 4 HOH A 20 420 72 HOH HOH . J 4 HOH A 21 421 79 HOH HOH . J 4 HOH A 22 422 83 HOH HOH . J 4 HOH A 23 423 91 HOH HOH . J 4 HOH A 24 424 93 HOH HOH . J 4 HOH A 25 425 95 HOH HOH . J 4 HOH A 26 426 99 HOH HOH . J 4 HOH A 27 427 114 HOH HOH . J 4 HOH A 28 428 116 HOH HOH . J 4 HOH A 29 429 123 HOH HOH . J 4 HOH A 30 430 128 HOH HOH . J 4 HOH A 31 431 130 HOH HOH . J 4 HOH A 32 432 131 HOH HOH . J 4 HOH A 33 433 143 HOH HOH . J 4 HOH A 34 434 153 HOH HOH . J 4 HOH A 35 435 154 HOH HOH . J 4 HOH A 36 436 161 HOH HOH . J 4 HOH A 37 437 162 HOH HOH . J 4 HOH A 38 438 170 HOH HOH . J 4 HOH A 39 439 175 HOH HOH . J 4 HOH A 40 440 183 HOH HOH . J 4 HOH A 41 441 184 HOH HOH . J 4 HOH A 42 442 188 HOH HOH . J 4 HOH A 43 443 194 HOH HOH . J 4 HOH A 44 444 195 HOH HOH . J 4 HOH A 45 445 202 HOH HOH . J 4 HOH A 46 446 205 HOH HOH . J 4 HOH A 47 447 209 HOH HOH . J 4 HOH A 48 448 214 HOH HOH . J 4 HOH A 49 449 215 HOH HOH . J 4 HOH A 50 450 223 HOH HOH . J 4 HOH A 51 451 225 HOH HOH . J 4 HOH A 52 452 242 HOH HOH . J 4 HOH A 53 453 245 HOH HOH . J 4 HOH A 54 454 263 HOH HOH . J 4 HOH A 55 455 264 HOH HOH . J 4 HOH A 56 456 266 HOH HOH . K 4 HOH B 1 401 268 HOH HOH . K 4 HOH B 2 402 4 HOH HOH . K 4 HOH B 3 403 5 HOH HOH . K 4 HOH B 4 404 7 HOH HOH . K 4 HOH B 5 405 14 HOH HOH . K 4 HOH B 6 406 21 HOH HOH . K 4 HOH B 7 407 25 HOH HOH . K 4 HOH B 8 408 27 HOH HOH . K 4 HOH B 9 409 35 HOH HOH . K 4 HOH B 10 410 43 HOH HOH . K 4 HOH B 11 411 48 HOH HOH . K 4 HOH B 12 412 49 HOH HOH . K 4 HOH B 13 413 60 HOH HOH . K 4 HOH B 14 414 68 HOH HOH . K 4 HOH B 15 415 69 HOH HOH . K 4 HOH B 16 416 70 HOH HOH . K 4 HOH B 17 417 78 HOH HOH . K 4 HOH B 18 418 80 HOH HOH . K 4 HOH B 19 419 82 HOH HOH . K 4 HOH B 20 420 84 HOH HOH . K 4 HOH B 21 421 92 HOH HOH . K 4 HOH B 22 422 101 HOH HOH . K 4 HOH B 23 423 103 HOH HOH . K 4 HOH B 24 424 106 HOH HOH . K 4 HOH B 25 425 108 HOH HOH . K 4 HOH B 26 426 109 HOH HOH . K 4 HOH B 27 427 112 HOH HOH . K 4 HOH B 28 428 117 HOH HOH . K 4 HOH B 29 429 119 HOH HOH . K 4 HOH B 30 430 124 HOH HOH . K 4 HOH B 31 431 125 HOH HOH . K 4 HOH B 32 432 126 HOH HOH . K 4 HOH B 33 433 133 HOH HOH . K 4 HOH B 34 434 135 HOH HOH . K 4 HOH B 35 435 140 HOH HOH . K 4 HOH B 36 436 144 HOH HOH . K 4 HOH B 37 437 145 HOH HOH . K 4 HOH B 38 438 146 HOH HOH . K 4 HOH B 39 439 158 HOH HOH . K 4 HOH B 40 440 164 HOH HOH . K 4 HOH B 41 441 171 HOH HOH . K 4 HOH B 42 442 172 HOH HOH . K 4 HOH B 43 443 182 HOH HOH . K 4 HOH B 44 444 185 HOH HOH . K 4 HOH B 45 445 191 HOH HOH . K 4 HOH B 46 446 192 HOH HOH . K 4 HOH B 47 447 193 HOH HOH . K 4 HOH B 48 448 196 HOH HOH . K 4 HOH B 49 449 200 HOH HOH . K 4 HOH B 50 450 201 HOH HOH . K 4 HOH B 51 451 203 HOH HOH . K 4 HOH B 52 452 207 HOH HOH . K 4 HOH B 53 453 211 HOH HOH . K 4 HOH B 54 454 212 HOH HOH . K 4 HOH B 55 455 213 HOH HOH . K 4 HOH B 56 456 229 HOH HOH . K 4 HOH B 57 457 231 HOH HOH . K 4 HOH B 58 458 239 HOH HOH . K 4 HOH B 59 459 241 HOH HOH . K 4 HOH B 60 460 244 HOH HOH . K 4 HOH B 61 461 246 HOH HOH . K 4 HOH B 62 462 253 HOH HOH . K 4 HOH B 63 463 254 HOH HOH . K 4 HOH B 64 464 260 HOH HOH . K 4 HOH B 65 465 262 HOH HOH . K 4 HOH B 66 466 265 HOH HOH . K 4 HOH B 67 467 11 HOH HOH . L 4 HOH C 1 401 15 HOH HOH . L 4 HOH C 2 402 16 HOH HOH . L 4 HOH C 3 403 17 HOH HOH . L 4 HOH C 4 404 19 HOH HOH . L 4 HOH C 5 405 26 HOH HOH . L 4 HOH C 6 406 31 HOH HOH . L 4 HOH C 7 407 55 HOH HOH . L 4 HOH C 8 408 71 HOH HOH . L 4 HOH C 9 409 74 HOH HOH . L 4 HOH C 10 410 76 HOH HOH . L 4 HOH C 11 411 77 HOH HOH . L 4 HOH C 12 412 81 HOH HOH . L 4 HOH C 13 413 86 HOH HOH . L 4 HOH C 14 414 88 HOH HOH . L 4 HOH C 15 415 90 HOH HOH . L 4 HOH C 16 416 97 HOH HOH . L 4 HOH C 17 417 98 HOH HOH . L 4 HOH C 18 418 104 HOH HOH . L 4 HOH C 19 419 105 HOH HOH . L 4 HOH C 20 420 107 HOH HOH . L 4 HOH C 21 421 121 HOH HOH . L 4 HOH C 22 422 129 HOH HOH . L 4 HOH C 23 423 132 HOH HOH . L 4 HOH C 24 424 136 HOH HOH . L 4 HOH C 25 425 138 HOH HOH . L 4 HOH C 26 426 141 HOH HOH . L 4 HOH C 27 427 142 HOH HOH . L 4 HOH C 28 428 149 HOH HOH . L 4 HOH C 29 429 150 HOH HOH . L 4 HOH C 30 430 152 HOH HOH . L 4 HOH C 31 431 156 HOH HOH . L 4 HOH C 32 432 157 HOH HOH . L 4 HOH C 33 433 159 HOH HOH . L 4 HOH C 34 434 163 HOH HOH . L 4 HOH C 35 435 165 HOH HOH . L 4 HOH C 36 436 167 HOH HOH . L 4 HOH C 37 437 176 HOH HOH . L 4 HOH C 38 438 178 HOH HOH . L 4 HOH C 39 439 181 HOH HOH . L 4 HOH C 40 440 189 HOH HOH . L 4 HOH C 41 441 190 HOH HOH . L 4 HOH C 42 442 197 HOH HOH . L 4 HOH C 43 443 204 HOH HOH . L 4 HOH C 44 444 226 HOH HOH . L 4 HOH C 45 445 227 HOH HOH . L 4 HOH C 46 446 230 HOH HOH . L 4 HOH C 47 447 233 HOH HOH . L 4 HOH C 48 448 235 HOH HOH . L 4 HOH C 49 449 243 HOH HOH . L 4 HOH C 50 450 247 HOH HOH . L 4 HOH C 51 451 248 HOH HOH . L 4 HOH C 52 452 249 HOH HOH . L 4 HOH C 53 453 251 HOH HOH . L 4 HOH C 54 454 252 HOH HOH . L 4 HOH C 55 455 256 HOH HOH . L 4 HOH C 56 456 257 HOH HOH . L 4 HOH C 57 457 258 HOH HOH . M 4 HOH D 1 401 2 HOH HOH . M 4 HOH D 2 402 3 HOH HOH . M 4 HOH D 3 403 6 HOH HOH . M 4 HOH D 4 404 9 HOH HOH . M 4 HOH D 5 405 12 HOH HOH . M 4 HOH D 6 406 13 HOH HOH . M 4 HOH D 7 407 18 HOH HOH . M 4 HOH D 8 408 28 HOH HOH . M 4 HOH D 9 409 29 HOH HOH . M 4 HOH D 10 410 30 HOH HOH . M 4 HOH D 11 411 32 HOH HOH . M 4 HOH D 12 412 36 HOH HOH . M 4 HOH D 13 413 39 HOH HOH . M 4 HOH D 14 414 46 HOH HOH . M 4 HOH D 15 415 47 HOH HOH . M 4 HOH D 16 416 54 HOH HOH . M 4 HOH D 17 417 58 HOH HOH . M 4 HOH D 18 418 59 HOH HOH . M 4 HOH D 19 419 62 HOH HOH . M 4 HOH D 20 420 75 HOH HOH . M 4 HOH D 21 421 85 HOH HOH . M 4 HOH D 22 422 100 HOH HOH . M 4 HOH D 23 423 102 HOH HOH . M 4 HOH D 24 424 111 HOH HOH . M 4 HOH D 25 425 113 HOH HOH . M 4 HOH D 26 426 120 HOH HOH . M 4 HOH D 27 427 127 HOH HOH . M 4 HOH D 28 428 134 HOH HOH . M 4 HOH D 29 429 137 HOH HOH . M 4 HOH D 30 430 139 HOH HOH . M 4 HOH D 31 431 148 HOH HOH . M 4 HOH D 32 432 151 HOH HOH . M 4 HOH D 33 433 155 HOH HOH . M 4 HOH D 34 434 160 HOH HOH . M 4 HOH D 35 435 166 HOH HOH . M 4 HOH D 36 436 168 HOH HOH . M 4 HOH D 37 437 169 HOH HOH . M 4 HOH D 38 438 173 HOH HOH . M 4 HOH D 39 439 174 HOH HOH . M 4 HOH D 40 440 177 HOH HOH . M 4 HOH D 41 441 179 HOH HOH . M 4 HOH D 42 442 180 HOH HOH . M 4 HOH D 43 443 187 HOH HOH . M 4 HOH D 44 444 198 HOH HOH . M 4 HOH D 45 445 199 HOH HOH . M 4 HOH D 46 446 206 HOH HOH . M 4 HOH D 47 447 217 HOH HOH . M 4 HOH D 48 448 218 HOH HOH . M 4 HOH D 49 449 232 HOH HOH . M 4 HOH D 50 450 234 HOH HOH . M 4 HOH D 51 451 238 HOH HOH . M 4 HOH D 52 452 240 HOH HOH . M 4 HOH D 53 453 250 HOH HOH . M 4 HOH D 54 454 255 HOH HOH . M 4 HOH D 55 455 261 HOH HOH . M 4 HOH D 56 456 267 HOH HOH . N 4 HOH E 1 101 37 HOH HOH . N 4 HOH E 2 102 89 HOH HOH . N 4 HOH E 3 103 94 HOH HOH . N 4 HOH E 4 104 122 HOH HOH . N 4 HOH E 5 105 147 HOH HOH . N 4 HOH E 6 106 210 HOH HOH . N 4 HOH E 7 107 219 HOH HOH . O 4 HOH F 1 201 10 HOH HOH . O 4 HOH F 2 202 33 HOH HOH . O 4 HOH F 3 203 38 HOH HOH . O 4 HOH F 4 204 73 HOH HOH . O 4 HOH F 5 205 87 HOH HOH . O 4 HOH F 6 206 96 HOH HOH . O 4 HOH F 7 207 186 HOH HOH . O 4 HOH F 8 208 208 HOH HOH . O 4 HOH F 9 209 216 HOH HOH . O 4 HOH F 10 210 221 HOH HOH . O 4 HOH F 11 211 222 HOH HOH . O 4 HOH F 12 212 224 HOH HOH . O 4 HOH F 13 213 236 HOH HOH . O 4 HOH F 14 214 237 HOH HOH . P 4 HOH G 1 101 115 HOH HOH . P 4 HOH G 2 102 67 HOH HOH . P 4 HOH G 3 103 110 HOH HOH . P 4 HOH G 4 104 220 HOH HOH . Q 4 HOH H 1 101 20 HOH HOH . Q 4 HOH H 2 102 23 HOH HOH . Q 4 HOH H 3 103 50 HOH HOH . Q 4 HOH H 4 104 118 HOH HOH . Q 4 HOH H 5 105 228 HOH HOH . Q 4 HOH H 6 106 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 3 22.911 39.036 8.895 1 21.42 ? C1 GOL 101 F 1 HETATM 2 O O1 GOL . . . I 3 23.004 38.229 10.034 1 30.32 ? O1 GOL 101 F 1 HETATM 3 C C2 GOL . . . I 3 23.565 40.383 9.204 1 31.75 ? C2 GOL 101 F 1 HETATM 4 O O2 GOL . . . I 3 23.646 41.126 8.001 1 33.47 ? O2 GOL 101 F 1 HETATM 5 C C3 GOL . . . I 3 24.976 40.155 9.732 1 29.78 ? C3 GOL 101 F 1 HETATM 6 O O3 GOL . . . I 3 25.594 41.406 9.92 1 21.71 ? O3 GOL 101 F 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 539 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #