data_4K81
#
_model_server_result.job_id            N2OE60MC4arxhK_oIt5sZQ 
_model_server_result.datetime_utc      '2024-11-02 16:27:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4k81 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":201}' 
#
_entry.id    4K81 
#
_exptl.entry_id    4K81 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.75 
_cell.angle_gamma         90 
_cell.entry_id            4K81 
_cell.length_a            79.727 
_cell.length_b            115.593 
_cell.length_c            103.107 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4K81 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
? dimeric 2 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K,L,M,N,O,Z,AA 1 1 
C,D,P,Q,R,S,BA,CA 2 1 
E,F,T,U,V,W,DA,EA 3 1 
G,H,X,Y,FA,GA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 O N N 
? 5 S N N 
? 5 W N N 
? 5 Y N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OG SER 22 B SER 17 1_555 O MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc2 B OG1 THR 40 B THR 35 1_555 O MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc3 N O2B GTP . B GTP 202 1_555 O MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc4 O MG MG . B MG 203 1_555 AA O HOH . B HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc5 D OG SER 22 D SER 17 1_555 S MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc6 D OG1 THR 40 D THR 35 1_555 S MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc7 R O2G GTP . D GTP 200 1_555 S MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
metalc ? metalc8 R O2B GTP . D GTP 200 1_555 S MG MG . D MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc9 S MG MG . D MG 201 1_555 CA O HOH . D HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
metalc ? metalc10 F OG SER 22 F SER 17 1_555 W MG MG . F MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc11 F OG1 THR 40 F THR 35 1_555 W MG MG . F MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc12 F OD2 ASP 62 F ASP 57 1_555 W MG MG . F MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? 
metalc ? metalc13 V O2B GTP . F GTP 200 1_555 W MG MG . F MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc14 V O2G GTP . F GTP 200 1_555 W MG MG . F MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc15 W MG MG . F MG 201 1_555 EA O HOH . F HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc16 H OG SER 22 H SER 17 1_555 Y MG MG . H MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc17 H OG1 THR 40 H THR 35 1_555 Y MG MG . H MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc18 X O2G GTP . H GTP 200 1_555 Y MG MG . H MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? 
metalc ? metalc19 X O2B GTP . H GTP 200 1_555 Y MG MG . H MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? 
metalc ? metalc20 Y MG MG . H MG 201 1_555 GA O HOH . H HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4K81 
_atom_sites.fract_transf_matrix[1][1]    0.012543 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001484 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008651 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009766 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 GOL A 1 401 400 GOL GOL . 
J 3 GOL A 1 402 401 GOL GOL . 
K 3 GOL A 1 403 403 GOL GOL . 
L 3 GOL A 1 404 404 GOL GOL . 
M 3 GOL B 1 201 402 GOL GOL . 
N 4 GTP B 1 202 200 GTP GTP . 
O 5 MG B 1 203 201 MG MG . 
P 3 GOL C 1 400 400 GOL GOL . 
Q 3 GOL C 1 401 401 GOL GOL . 
R 4 GTP D 1 200 200 GTP GTP . 
S 5 MG D 1 201 201 MG MG . 
T 3 GOL E 1 400 400 GOL GOL . 
U 3 GOL E 1 401 401 GOL GOL . 
V 4 GTP F 1 200 200 GTP GTP . 
W 5 MG F 1 201 201 MG MG . 
X 4 GTP H 1 200 200 GTP GTP . 
Y 5 MG H 1 201 201 MG MG . 
Z 6 HOH A 1 501 4 HOH HOH . 
Z 6 HOH A 2 502 5 HOH HOH . 
Z 6 HOH A 3 503 9 HOH HOH . 
Z 6 HOH A 4 504 10 HOH HOH . 
Z 6 HOH A 5 505 23 HOH HOH . 
Z 6 HOH A 6 506 27 HOH HOH . 
Z 6 HOH A 7 507 28 HOH HOH . 
Z 6 HOH A 8 508 30 HOH HOH . 
Z 6 HOH A 9 509 33 HOH HOH . 
Z 6 HOH A 10 510 41 HOH HOH . 
Z 6 HOH A 11 511 43 HOH HOH . 
Z 6 HOH A 12 512 49 HOH HOH . 
Z 6 HOH A 13 513 53 HOH HOH . 
Z 6 HOH A 14 514 56 HOH HOH . 
Z 6 HOH A 15 515 59 HOH HOH . 
Z 6 HOH A 16 516 65 HOH HOH . 
Z 6 HOH A 17 517 69 HOH HOH . 
Z 6 HOH A 18 518 83 HOH HOH . 
Z 6 HOH A 19 519 100 HOH HOH . 
Z 6 HOH A 20 520 106 HOH HOH . 
Z 6 HOH A 21 521 108 HOH HOH . 
Z 6 HOH A 22 522 118 HOH HOH . 
Z 6 HOH A 23 523 125 HOH HOH . 
Z 6 HOH A 24 524 163 HOH HOH . 
Z 6 HOH A 25 525 166 HOH HOH . 
Z 6 HOH A 26 526 168 HOH HOH . 
Z 6 HOH A 27 527 192 HOH HOH . 
Z 6 HOH A 28 528 194 HOH HOH . 
Z 6 HOH A 29 529 195 HOH HOH . 
Z 6 HOH A 30 530 197 HOH HOH . 
Z 6 HOH A 31 531 198 HOH HOH . 
Z 6 HOH A 32 532 208 HOH HOH . 
Z 6 HOH A 33 533 209 HOH HOH . 
Z 6 HOH A 34 534 227 HOH HOH . 
Z 6 HOH A 35 535 240 HOH HOH . 
Z 6 HOH A 36 536 241 HOH HOH . 
Z 6 HOH A 37 537 260 HOH HOH . 
Z 6 HOH A 38 538 264 HOH HOH . 
Z 6 HOH A 39 539 291 HOH HOH . 
Z 6 HOH A 40 540 311 HOH HOH . 
Z 6 HOH A 41 541 320 HOH HOH . 
Z 6 HOH A 42 542 329 HOH HOH . 
Z 6 HOH A 43 543 332 HOH HOH . 
Z 6 HOH A 44 544 337 HOH HOH . 
Z 6 HOH A 45 545 340 HOH HOH . 
Z 6 HOH A 46 546 348 HOH HOH . 
AA 6 HOH B 1 301 1 HOH HOH . 
AA 6 HOH B 2 302 6 HOH HOH . 
AA 6 HOH B 3 303 8 HOH HOH . 
AA 6 HOH B 4 304 12 HOH HOH . 
AA 6 HOH B 5 305 14 HOH HOH . 
AA 6 HOH B 6 306 18 HOH HOH . 
AA 6 HOH B 7 307 29 HOH HOH . 
AA 6 HOH B 8 308 52 HOH HOH . 
AA 6 HOH B 9 309 67 HOH HOH . 
AA 6 HOH B 10 310 70 HOH HOH . 
AA 6 HOH B 11 311 78 HOH HOH . 
AA 6 HOH B 12 312 97 HOH HOH . 
AA 6 HOH B 13 313 101 HOH HOH . 
AA 6 HOH B 14 314 139 HOH HOH . 
AA 6 HOH B 15 315 167 HOH HOH . 
AA 6 HOH B 16 316 180 HOH HOH . 
AA 6 HOH B 17 317 181 HOH HOH . 
AA 6 HOH B 18 318 212 HOH HOH . 
AA 6 HOH B 19 319 246 HOH HOH . 
AA 6 HOH B 20 320 271 HOH HOH . 
AA 6 HOH B 21 321 300 HOH HOH . 
AA 6 HOH B 22 322 301 HOH HOH . 
AA 6 HOH B 23 323 305 HOH HOH . 
AA 6 HOH B 24 324 324 HOH HOH . 
BA 6 HOH C 1 501 3 HOH HOH . 
BA 6 HOH C 2 502 24 HOH HOH . 
BA 6 HOH C 3 503 31 HOH HOH . 
BA 6 HOH C 4 504 45 HOH HOH . 
BA 6 HOH C 5 505 64 HOH HOH . 
BA 6 HOH C 6 506 77 HOH HOH . 
BA 6 HOH C 7 507 84 HOH HOH . 
BA 6 HOH C 8 508 95 HOH HOH . 
BA 6 HOH C 9 509 120 HOH HOH . 
BA 6 HOH C 10 510 132 HOH HOH . 
BA 6 HOH C 11 511 143 HOH HOH . 
BA 6 HOH C 12 512 161 HOH HOH . 
BA 6 HOH C 13 513 162 HOH HOH . 
BA 6 HOH C 14 514 175 HOH HOH . 
BA 6 HOH C 15 515 178 HOH HOH . 
BA 6 HOH C 16 516 188 HOH HOH . 
BA 6 HOH C 17 517 193 HOH HOH . 
BA 6 HOH C 18 518 217 HOH HOH . 
BA 6 HOH C 19 519 222 HOH HOH . 
BA 6 HOH C 20 520 230 HOH HOH . 
BA 6 HOH C 21 521 236 HOH HOH . 
BA 6 HOH C 22 522 237 HOH HOH . 
BA 6 HOH C 23 523 247 HOH HOH . 
BA 6 HOH C 24 524 308 HOH HOH . 
BA 6 HOH C 25 525 318 HOH HOH . 
CA 6 HOH D 1 301 2 HOH HOH . 
CA 6 HOH D 2 302 11 HOH HOH . 
CA 6 HOH D 3 303 19 HOH HOH . 
CA 6 HOH D 4 304 89 HOH HOH . 
CA 6 HOH D 5 305 111 HOH HOH . 
CA 6 HOH D 6 306 112 HOH HOH . 
CA 6 HOH D 7 307 116 HOH HOH . 
CA 6 HOH D 8 308 124 HOH HOH . 
CA 6 HOH D 9 309 135 HOH HOH . 
CA 6 HOH D 10 310 140 HOH HOH . 
CA 6 HOH D 11 311 157 HOH HOH . 
CA 6 HOH D 12 312 164 HOH HOH . 
CA 6 HOH D 13 313 172 HOH HOH . 
CA 6 HOH D 14 314 176 HOH HOH . 
CA 6 HOH D 15 315 206 HOH HOH . 
CA 6 HOH D 16 316 210 HOH HOH . 
CA 6 HOH D 17 317 275 HOH HOH . 
CA 6 HOH D 18 318 279 HOH HOH . 
CA 6 HOH D 19 319 281 HOH HOH . 
CA 6 HOH D 20 320 287 HOH HOH . 
CA 6 HOH D 21 321 319 HOH HOH . 
DA 6 HOH E 1 501 7 HOH HOH . 
DA 6 HOH E 2 502 15 HOH HOH . 
DA 6 HOH E 3 503 17 HOH HOH . 
DA 6 HOH E 4 504 21 HOH HOH . 
DA 6 HOH E 5 505 25 HOH HOH . 
DA 6 HOH E 6 506 37 HOH HOH . 
DA 6 HOH E 7 507 38 HOH HOH . 
DA 6 HOH E 8 508 61 HOH HOH . 
DA 6 HOH E 9 509 66 HOH HOH . 
DA 6 HOH E 10 510 68 HOH HOH . 
DA 6 HOH E 11 511 80 HOH HOH . 
DA 6 HOH E 12 512 81 HOH HOH . 
DA 6 HOH E 13 513 91 HOH HOH . 
DA 6 HOH E 14 514 92 HOH HOH . 
DA 6 HOH E 15 515 105 HOH HOH . 
DA 6 HOH E 16 516 110 HOH HOH . 
DA 6 HOH E 17 517 113 HOH HOH . 
DA 6 HOH E 18 518 119 HOH HOH . 
DA 6 HOH E 19 519 121 HOH HOH . 
DA 6 HOH E 20 520 145 HOH HOH . 
DA 6 HOH E 21 521 160 HOH HOH . 
DA 6 HOH E 22 522 184 HOH HOH . 
DA 6 HOH E 23 523 200 HOH HOH . 
DA 6 HOH E 24 524 204 HOH HOH . 
DA 6 HOH E 25 525 205 HOH HOH . 
DA 6 HOH E 26 526 213 HOH HOH . 
DA 6 HOH E 27 527 255 HOH HOH . 
DA 6 HOH E 28 528 257 HOH HOH . 
DA 6 HOH E 29 529 261 HOH HOH . 
DA 6 HOH E 30 530 282 HOH HOH . 
DA 6 HOH E 31 531 290 HOH HOH . 
DA 6 HOH E 32 532 298 HOH HOH . 
DA 6 HOH E 33 533 342 HOH HOH . 
EA 6 HOH F 1 301 34 HOH HOH . 
EA 6 HOH F 2 302 35 HOH HOH . 
EA 6 HOH F 3 303 39 HOH HOH . 
EA 6 HOH F 4 304 50 HOH HOH . 
EA 6 HOH F 5 305 57 HOH HOH . 
EA 6 HOH F 6 306 75 HOH HOH . 
EA 6 HOH F 7 307 82 HOH HOH . 
EA 6 HOH F 8 308 85 HOH HOH . 
EA 6 HOH F 9 309 170 HOH HOH . 
EA 6 HOH F 10 310 179 HOH HOH . 
EA 6 HOH F 11 311 214 HOH HOH . 
EA 6 HOH F 12 312 219 HOH HOH . 
EA 6 HOH F 13 313 239 HOH HOH . 
EA 6 HOH F 14 314 278 HOH HOH . 
EA 6 HOH F 15 315 284 HOH HOH . 
EA 6 HOH F 16 316 321 HOH HOH . 
FA 6 HOH G 1 401 42 HOH HOH . 
FA 6 HOH G 2 402 46 HOH HOH . 
FA 6 HOH G 3 403 62 HOH HOH . 
FA 6 HOH G 4 404 123 HOH HOH . 
FA 6 HOH G 5 405 153 HOH HOH . 
FA 6 HOH G 6 406 165 HOH HOH . 
FA 6 HOH G 7 407 189 HOH HOH . 
FA 6 HOH G 8 408 201 HOH HOH . 
FA 6 HOH G 9 409 215 HOH HOH . 
FA 6 HOH G 10 410 233 HOH HOH . 
GA 6 HOH H 1 301 13 HOH HOH . 
GA 6 HOH H 2 302 138 HOH HOH . 
GA 6 HOH H 3 303 159 HOH HOH . 
GA 6 HOH H 4 304 183 HOH HOH . 
GA 6 HOH H 5 305 191 HOH HOH . 
GA 6 HOH H 6 306 225 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         S 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -7.425 
_atom_site.Cartn_y               -16.565 
_atom_site.Cartn_z               -19.552 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        45.18 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          D 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#