data_4K87
#
_model_server_result.job_id            s8eLMoX4hhAZQaWawWs9WQ 
_model_server_result.datetime_utc      '2024-11-24 16:26:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4k87 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    4K87 
#
_exptl.entry_id    4K87 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              115.13 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PROLINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4K87 
_cell.length_a            120.163 
_cell.length_b            120.163 
_cell.length_c            107.098 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4K87 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 180.2445 104.064211 35.699333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 471 A CYS 448 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc2 A SG CYS 476 A CYS 453 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc3 A SG CYS 518 A CYS 495 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc4 A SG CYS 520 A CYS 497 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? 
#
_chem_comp.formula           'C5 H9 N O2' 
_chem_comp.formula_weight    115.13 
_chem_comp.id                PRO 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              PROLINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA PRO sing 294 n n 
N CD PRO sing 295 n n 
N H PRO sing 296 n n 
CA C PRO sing 297 n n 
CA CB PRO sing 298 n n 
CA HA PRO sing 299 n n 
C O PRO doub 300 n n 
C OXT PRO sing 301 n n 
CB CG PRO sing 302 n n 
CB HB2 PRO sing 303 n n 
CB HB3 PRO sing 304 n n 
CG CD PRO sing 305 n n 
CG HG2 PRO sing 306 n n 
CG HG3 PRO sing 307 n n 
CD HD2 PRO sing 308 n n 
CD HD3 PRO sing 309 n n 
OXT HXT PRO sing 310 n n 
#
_atom_sites.entry_id                     4K87 
_atom_sites.fract_transf_matrix[1][1]    0.008322 
_atom_sites.fract_transf_matrix[1][2]    0.004805 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009609 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009337 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 601 700 ZN ZN . 
C 3 ADN A 1 602 800 ADN ADN . 
D 4 PRO A 1 603 900 PRO PRO . 
E 5 HOH A 1 701 1 HOH HOH . 
E 5 HOH A 2 702 2 HOH HOH . 
E 5 HOH A 3 703 3 HOH HOH . 
E 5 HOH A 4 704 4 HOH HOH . 
E 5 HOH A 5 705 5 HOH HOH . 
E 5 HOH A 6 706 6 HOH HOH . 
E 5 HOH A 7 707 7 HOH HOH . 
E 5 HOH A 8 708 8 HOH HOH . 
E 5 HOH A 9 709 9 HOH HOH . 
E 5 HOH A 10 710 10 HOH HOH . 
E 5 HOH A 11 711 11 HOH HOH . 
E 5 HOH A 12 712 12 HOH HOH . 
E 5 HOH A 13 713 13 HOH HOH . 
E 5 HOH A 14 714 14 HOH HOH . 
E 5 HOH A 15 715 15 HOH HOH . 
E 5 HOH A 16 716 16 HOH HOH . 
E 5 HOH A 17 717 17 HOH HOH . 
E 5 HOH A 18 718 18 HOH HOH . 
E 5 HOH A 19 719 19 HOH HOH . 
E 5 HOH A 20 720 20 HOH HOH . 
E 5 HOH A 21 721 21 HOH HOH . 
E 5 HOH A 22 722 22 HOH HOH . 
E 5 HOH A 23 723 23 HOH HOH . 
E 5 HOH A 24 724 24 HOH HOH . 
E 5 HOH A 25 725 25 HOH HOH . 
E 5 HOH A 26 726 26 HOH HOH . 
E 5 HOH A 27 727 27 HOH HOH . 
E 5 HOH A 28 728 28 HOH HOH . 
E 5 HOH A 29 729 29 HOH HOH . 
E 5 HOH A 30 730 30 HOH HOH . 
E 5 HOH A 31 731 31 HOH HOH . 
E 5 HOH A 32 732 32 HOH HOH . 
E 5 HOH A 33 733 33 HOH HOH . 
E 5 HOH A 34 734 34 HOH HOH . 
E 5 HOH A 35 735 35 HOH HOH . 
E 5 HOH A 36 736 36 HOH HOH . 
E 5 HOH A 37 737 37 HOH HOH . 
E 5 HOH A 38 738 38 HOH HOH . 
E 5 HOH A 39 739 39 HOH HOH . 
E 5 HOH A 40 740 40 HOH HOH . 
E 5 HOH A 41 741 41 HOH HOH . 
E 5 HOH A 42 742 42 HOH HOH . 
E 5 HOH A 43 743 43 HOH HOH . 
E 5 HOH A 44 744 44 HOH HOH . 
E 5 HOH A 45 745 45 HOH HOH . 
E 5 HOH A 46 746 46 HOH HOH . 
E 5 HOH A 47 747 47 HOH HOH . 
E 5 HOH A 48 748 48 HOH HOH . 
E 5 HOH A 49 749 49 HOH HOH . 
E 5 HOH A 50 750 50 HOH HOH . 
E 5 HOH A 51 751 51 HOH HOH . 
E 5 HOH A 52 752 52 HOH HOH . 
E 5 HOH A 53 753 53 HOH HOH . 
E 5 HOH A 54 754 54 HOH HOH . 
E 5 HOH A 55 755 55 HOH HOH . 
E 5 HOH A 56 756 56 HOH HOH . 
E 5 HOH A 57 757 57 HOH HOH . 
E 5 HOH A 58 758 58 HOH HOH . 
E 5 HOH A 59 759 59 HOH HOH . 
E 5 HOH A 60 760 60 HOH HOH . 
E 5 HOH A 61 761 61 HOH HOH . 
E 5 HOH A 62 762 62 HOH HOH . 
E 5 HOH A 63 763 63 HOH HOH . 
E 5 HOH A 64 764 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N PRO . . . D 4 31.756 123.176 13.413 1 62.65 ? N PRO 603 A 1 
HETATM 2 C CA PRO . . . D 4 30.932 123.521 12.249 1 62.51 ? CA PRO 603 A 1 
HETATM 3 C C PRO . . . D 4 31.604 123.086 10.956 1 63.37 ? C PRO 603 A 1 
HETATM 4 O O PRO . . . D 4 32.766 122.687 10.945 1 62.09 ? O PRO 603 A 1 
HETATM 5 C CB PRO . . . D 4 30.873 125.058 12.294 1 57.34 ? CB PRO 603 A 1 
HETATM 6 C CG PRO . . . D 4 31.114 125.403 13.697 1 59.93 ? CG PRO 603 A 1 
HETATM 7 C CD PRO . . . D 4 32.02 124.346 14.269 1 64.31 ? CD PRO 603 A 1 
HETATM 8 O OXT PRO . . . D 4 30.999 123.148 9.889 1 65.15 ? OXT PRO 603 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           8 
#