data_4K88 # _model_server_result.job_id u51zK_ReSJkBkTys3Fzggg _model_server_result.datetime_utc '2024-11-24 13:53:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 4K88 # _exptl.entry_id 4K88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.681 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-bromo-6-chloro-3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4K88 _cell.length_a 120.813 _cell.length_b 120.813 _cell.length_c 104.711 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -34.903667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 476 A CYS 453 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc2 A SG CYS 518 A CYS 495 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc3 A SG CYS 520 A CYS 497 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? # _chem_comp.formula 'C16 H17 Br Cl N3 O3' _chem_comp.formula_weight 414.681 _chem_comp.id HFG _chem_comp.mon_nstd_flag . _chem_comp.name 7-bromo-6-chloro-3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Halofuginone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C6 HFG sing 129 n n C6 C5 HFG doub 130 n y C6 C7 HFG sing 131 n y BR1 C7 HFG sing 132 n n C5 C10 HFG sing 133 n y C7 C8 HFG doub 134 n y O11 C4 HFG doub 135 n n C10 C4 HFG sing 136 n n C10 C9 HFG doub 137 n y C8 C9 HFG sing 138 n y C4 N3 HFG sing 139 n n C9 N1 HFG sing 140 n n N1' C6' HFG sing 141 n n N1' C2' HFG sing 142 n n C6' C5' HFG sing 143 n n O4' C21 HFG doub 144 n n N3 C1' HFG sing 145 n n N3 C2 HFG sing 146 n n N1 C2 HFG doub 147 n n C21 C3' HFG sing 148 n n C21 C1' HFG sing 149 n n C3' C2' HFG sing 150 n n C2' C39 HFG sing 151 n n C5' C4' HFG sing 152 n n C39 C4' HFG sing 153 n n C39 O7' HFG sing 154 n n C3' H1 HFG sing 155 n n C3' H2 HFG sing 156 n n C2' H3 HFG sing 157 n n N1' H4 HFG sing 158 n n C6' H6 HFG sing 159 n n C6' H7 HFG sing 160 n n C5' H8 HFG sing 161 n n C5' H9 HFG sing 162 n n C4' H10 HFG sing 163 n n C4' H11 HFG sing 164 n n C39 H12 HFG sing 165 n n O7' H13 HFG sing 166 n n C1' H14 HFG sing 167 n n C1' H15 HFG sing 168 n n C5 H16 HFG sing 169 n n C2 H17 HFG sing 170 n n C8 H18 HFG sing 171 n n # _atom_sites.entry_id 4K88 _atom_sites.fract_transf_matrix[1][1] 0.008277 _atom_sites.fract_transf_matrix[1][2] 0.004779 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 601 700 ZN ZN . C 3 HFG A 1 602 888 HFG HFC . D 4 HOH A 1 701 1 HOH HOH . D 4 HOH A 2 702 2 HOH HOH . D 4 HOH A 3 703 3 HOH HOH . D 4 HOH A 4 704 4 HOH HOH . D 4 HOH A 5 705 5 HOH HOH . D 4 HOH A 6 706 6 HOH HOH . D 4 HOH A 7 707 7 HOH HOH . D 4 HOH A 8 708 8 HOH HOH . D 4 HOH A 9 709 9 HOH HOH . D 4 HOH A 10 710 10 HOH HOH . D 4 HOH A 11 711 11 HOH HOH . D 4 HOH A 12 712 12 HOH HOH . D 4 HOH A 13 713 13 HOH HOH . D 4 HOH A 14 714 14 HOH HOH . D 4 HOH A 15 715 15 HOH HOH . D 4 HOH A 16 716 16 HOH HOH . D 4 HOH A 17 717 17 HOH HOH . D 4 HOH A 18 718 18 HOH HOH . D 4 HOH A 19 719 19 HOH HOH . D 4 HOH A 20 720 20 HOH HOH . D 4 HOH A 21 721 21 HOH HOH . D 4 HOH A 22 722 22 HOH HOH . D 4 HOH A 23 723 23 HOH HOH . D 4 HOH A 24 724 24 HOH HOH . D 4 HOH A 25 725 25 HOH HOH . D 4 HOH A 26 726 26 HOH HOH . D 4 HOH A 27 727 27 HOH HOH . D 4 HOH A 28 728 28 HOH HOH . D 4 HOH A 29 729 29 HOH HOH . D 4 HOH A 30 730 30 HOH HOH . D 4 HOH A 31 731 31 HOH HOH . D 4 HOH A 32 732 32 HOH HOH . D 4 HOH A 33 733 33 HOH HOH . D 4 HOH A 34 734 34 HOH HOH . D 4 HOH A 35 735 35 HOH HOH . D 4 HOH A 36 736 36 HOH HOH . D 4 HOH A 37 737 37 HOH HOH . D 4 HOH A 38 738 38 HOH HOH . D 4 HOH A 39 739 39 HOH HOH . D 4 HOH A 40 740 40 HOH HOH . D 4 HOH A 41 741 41 HOH HOH . D 4 HOH A 42 742 42 HOH HOH . D 4 HOH A 43 743 43 HOH HOH . D 4 HOH A 44 744 44 HOH HOH . D 4 HOH A 45 745 45 HOH HOH . D 4 HOH A 46 746 46 HOH HOH . D 4 HOH A 47 747 47 HOH HOH . D 4 HOH A 48 748 48 HOH HOH . D 4 HOH A 49 749 49 HOH HOH . D 4 HOH A 50 750 50 HOH HOH . D 4 HOH A 51 751 51 HOH HOH . D 4 HOH A 52 752 52 HOH HOH . D 4 HOH A 53 753 53 HOH HOH . D 4 HOH A 54 754 54 HOH HOH . D 4 HOH A 55 755 55 HOH HOH . D 4 HOH A 56 756 56 HOH HOH . D 4 HOH A 57 757 57 HOH HOH . D 4 HOH A 58 758 58 HOH HOH . D 4 HOH A 59 759 59 HOH HOH . D 4 HOH A 60 760 60 HOH HOH . D 4 HOH A 61 761 61 HOH HOH . D 4 HOH A 62 762 62 HOH HOH . D 4 HOH A 63 763 63 HOH HOH . D 4 HOH A 64 764 64 HOH HOH . D 4 HOH A 65 765 65 HOH HOH . D 4 HOH A 66 766 66 HOH HOH . D 4 HOH A 67 767 67 HOH HOH . D 4 HOH A 68 768 68 HOH HOH . D 4 HOH A 69 769 69 HOH HOH . D 4 HOH A 70 770 70 HOH HOH . D 4 HOH A 71 771 71 HOH HOH . D 4 HOH A 72 772 72 HOH HOH . D 4 HOH A 73 773 73 HOH HOH . D 4 HOH A 74 774 74 HOH HOH . D 4 HOH A 75 775 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4' HFG . . . C 3 -29.26 14.308 -10.172 1 63.9 ? O4' HFG 602 A 1 HETATM 2 C C21 HFG . . . C 3 -28.738 15.416 -10.299 1 63.95 ? C21 HFG 602 A 1 HETATM 3 C C3' HFG . . . C 3 -29.046 16.338 -11.476 1 62.22 ? C3' HFG 602 A 1 HETATM 4 C C2' HFG . . . C 3 -30.461 16.135 -12.027 1 60.19 ? C2' HFG 602 A 1 HETATM 5 N N1' HFG . . . C 3 -30.619 14.77 -12.551 1 57.49 ? N1' HFG 602 A 1 HETATM 6 C C6' HFG . . . C 3 -31.98 14.584 -13.07 1 51.19 ? C6' HFG 602 A 1 HETATM 7 C C5' HFG . . . C 3 -33.008 14.803 -11.977 1 46.97 ? C5' HFG 602 A 1 HETATM 8 C C4' HFG . . . C 3 -32.839 16.211 -11.467 1 47.86 ? C4' HFG 602 A 1 HETATM 9 C C39 HFG . . . C 3 -31.442 16.378 -10.92 1 57.29 ? C39 HFG 602 A 1 HETATM 10 O O7' HFG . . . C 3 -31.305 17.716 -10.46 1 57.08 ? O7' HFG 602 A 1 HETATM 11 C C1' HFG . . . C 3 -27.704 15.948 -9.3 1 67.83 ? C1' HFG 602 A 1 HETATM 12 N N3 HFG . . . C 3 -26.585 14.99 -9.26 1 70.81 ? N3 HFG 602 A 1 HETATM 13 C C4 HFG . . . C 3 -25.695 14.962 -10.255 1 74.38 ? C4 HFG 602 A 1 HETATM 14 O O11 HFG . . . C 3 -25.781 15.792 -11.324 1 72.46 ? O11 HFG 602 A 1 HETATM 15 C C10 HFG . . . C 3 -24.64 14.07 -10.241 1 79.5 ? C10 HFG 602 A 1 HETATM 16 C C5 HFG . . . C 3 -23.729 14.027 -11.286 1 78.25 ? C5 HFG 602 A 1 HETATM 17 C C2 HFG . . . C 3 -26.456 14.117 -8.179 1 67.75 ? C2 HFG 602 A 1 HETATM 18 N N1 HFG . . . C 3 -25.456 13.255 -8.132 1 75.33 ? N1 HFG 602 A 1 HETATM 19 C C9 HFG . . . C 3 -24.516 13.209 -9.165 1 82.53 ? C9 HFG 602 A 1 HETATM 20 C C8 HFG . . . C 3 -23.484 12.285 -9.134 1 84.64 ? C8 HFG 602 A 1 HETATM 21 C C7 HFG . . . C 3 -22.568 12.235 -10.176 1 90.54 ? C7 HFG 602 A 1 HETATM 22 BR BR1 HFG . . . C 3 -21.185 10.988 -10.082 1 119.54 ? BR1 HFG 602 A 1 HETATM 23 C C6 HFG . . . C 3 -22.686 13.11 -11.253 1 85.36 ? C6 HFG 602 A 1 HETATM 24 CL CL1 HFG . . . C 3 -21.56 13.071 -12.548 1 94.09 ? CL1 HFG 602 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #