data_4K8A
#
_model_server_result.job_id            brLt9ZfLeMehVIfZfWbjMA 
_model_server_result.datetime_utc      '2024-12-22 02:51:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4k8a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    4K8A 
#
_exptl.entry_id    4K8A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              226.033 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-bromo-5-(2H-tetrazol-5-yl)pyridine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4K8A 
_cell.length_a            47.07 
_cell.length_b            88.559 
_cell.length_c            137.087 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4K8A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
B,D,F 2 1 
A,C,E 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 49 A CYS 456 1_555 A SG CYS 52 A CYS 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 B SG CYS 49 B CYS 456 1_555 B SG CYS 52 B CYS 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
#
_chem_comp.formula           'C6 H4 Br N5' 
_chem_comp.formula_weight    226.033 
_chem_comp.id                K8A 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-bromo-5-(2H-tetrazol-5-yl)pyridine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
BR1 C10 K8A sing 173 n n 
C10 C8 K8A doub 174 n y 
C10 C12 K8A sing 175 n y 
C8 C6 K8A sing 176 n y 
C12 N7 K8A doub 177 n y 
C6 C1 K8A sing 178 n n 
C6 C9 K8A doub 179 n y 
N5 C1 K8A sing 180 n y 
N5 N4 K8A doub 181 n y 
N7 C9 K8A sing 182 n y 
C1 N3 K8A doub 183 n y 
N4 N2 K8A sing 184 n y 
N3 N2 K8A sing 185 n y 
N2 H1 K8A sing 186 n n 
C8 H2 K8A sing 187 n n 
C9 H3 K8A sing 188 n n 
C12 H4 K8A sing 189 n n 
#
_atom_sites.entry_id                     4K8A 
_atom_sites.fract_transf_matrix[1][1]    0.021245 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011292 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007295 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 K8A A 1 701 701 K8A K8A . 
D 2 K8A B 1 701 701 K8A K8A . 
E 3 HOH A 1 801 805 HOH HOH . 
E 3 HOH A 2 802 806 HOH HOH . 
E 3 HOH A 3 803 808 HOH HOH . 
E 3 HOH A 4 804 809 HOH HOH . 
E 3 HOH A 5 805 801 HOH HOH . 
E 3 HOH A 6 806 806 HOH HOH . 
E 3 HOH A 7 807 809 HOH HOH . 
E 3 HOH A 8 808 811 HOH HOH . 
F 3 HOH B 1 801 801 HOH HOH . 
F 3 HOH B 2 802 802 HOH HOH . 
F 3 HOH B 3 803 803 HOH HOH . 
F 3 HOH B 4 804 804 HOH HOH . 
F 3 HOH B 5 805 807 HOH HOH . 
F 3 HOH B 6 806 802 HOH HOH . 
F 3 HOH B 7 807 803 HOH HOH . 
F 3 HOH B 8 808 804 HOH HOH . 
F 3 HOH B 9 809 805 HOH HOH . 
F 3 HOH B 10 810 807 HOH HOH . 
F 3 HOH B 11 811 808 HOH HOH . 
F 3 HOH B 12 812 810 HOH HOH . 
F 3 HOH B 13 813 812 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 K8A . . . D 2 -5.938 10.306 -3.525 1 88.1 ? C1 K8A 701 B 1 
HETATM 2 N N2 K8A . . . D 2 -4.389 10.433 -4.994 1 86.55 ? N2 K8A 701 B 1 
HETATM 3 N N3 K8A . . . D 2 -4.941 11.027 -4 1 86.99 ? N3 K8A 701 B 1 
HETATM 4 N N4 K8A . . . D 2 -4.967 9.304 -5.221 1 86.85 ? N4 K8A 701 B 1 
HETATM 5 N N5 K8A . . . D 2 -5.998 9.176 -4.275 1 87.16 ? N5 K8A 701 B 1 
HETATM 6 C C6 K8A . . . D 2 -6.822 10.649 -2.381 1 90.19 ? C6 K8A 701 B 1 
HETATM 7 N N7 K8A . . . D 2 -7.28 11.989 -0.477 1 90.47 ? N7 K8A 701 B 1 
HETATM 8 C C8 K8A . . . D 2 -8.014 9.936 -2.154 1 91.84 ? C8 K8A 701 B 1 
HETATM 9 C C9 K8A . . . D 2 -6.489 11.688 -1.495 1 90.17 ? C9 K8A 701 B 1 
HETATM 10 C C10 K8A . . . D 2 -8.81 10.293 -1.067 1 94.41 ? C10 K8A 701 B 1 
HETATM 11 BR BR1 K8A . . . D 2 -10.415 9.355 -0.709 1 100.7 ? BR1 K8A 701 B 1 
HETATM 12 C C12 K8A . . . D 2 -8.397 11.323 -0.229 1 91.74 ? C12 K8A 701 B 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           536 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           12 
#