data_4K8M # _model_server_result.job_id s5JHMyNg2H68d-KLwDem6w _model_server_result.datetime_utc '2024-10-20 08:20:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k8m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2004}' # _entry.id 4K8M # _exptl.entry_id 4K8M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K8M _cell.length_a 51.595 _cell.length_b 47.705 _cell.length_c 26.05 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 10 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 1011 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 13 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 1014 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.066 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4K8M _atom_sites.fract_transf_matrix[1][1] 0.019382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020962 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.038388 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 2001 2001 NO3 NO3 . C 2 NO3 A 1 2002 2002 NO3 NO3 . D 3 CL A 1 2003 3002 CL CL . E 4 GOL A 1 2004 5001 GOL GOL . F 5 PEG A 1 2005 6001 PEG PEG . G 6 HOH A 1 4001 4001 HOH HOH . G 6 HOH A 2 4002 4002 HOH HOH . G 6 HOH A 3 4003 4003 HOH HOH . G 6 HOH A 4 4004 4004 HOH HOH . G 6 HOH A 5 4005 4005 HOH HOH . G 6 HOH A 6 4006 4006 HOH HOH . G 6 HOH A 7 4007 4007 HOH HOH . G 6 HOH A 8 4008 4008 HOH HOH . G 6 HOH A 9 4009 4009 HOH HOH . G 6 HOH A 10 4010 4010 HOH HOH . G 6 HOH A 11 4011 4011 HOH HOH . G 6 HOH A 12 4012 4012 HOH HOH . G 6 HOH A 13 4013 4013 HOH HOH . G 6 HOH A 14 4014 4014 HOH HOH . G 6 HOH A 15 4015 4015 HOH HOH . G 6 HOH A 16 4016 4016 HOH HOH . G 6 HOH A 17 4017 4017 HOH HOH . G 6 HOH A 18 4018 4018 HOH HOH . G 6 HOH A 19 4019 4019 HOH HOH . G 6 HOH A 20 4020 4020 HOH HOH . G 6 HOH A 21 4021 4021 HOH HOH . G 6 HOH A 22 4022 4022 HOH HOH . G 6 HOH A 23 4023 4023 HOH HOH . G 6 HOH A 24 4024 4024 HOH HOH . G 6 HOH A 25 4025 4025 HOH HOH . G 6 HOH A 26 4026 4026 HOH HOH . G 6 HOH A 27 4027 4027 HOH HOH . G 6 HOH A 28 4028 4028 HOH HOH . G 6 HOH A 29 4029 4029 HOH HOH . G 6 HOH A 30 4030 4030 HOH HOH . G 6 HOH A 31 4031 4031 HOH HOH . G 6 HOH A 32 4032 4032 HOH HOH . G 6 HOH A 33 4033 4033 HOH HOH . G 6 HOH A 34 4034 4034 HOH HOH . G 6 HOH A 35 4035 4035 HOH HOH . G 6 HOH A 36 4036 4036 HOH HOH . G 6 HOH A 37 4037 4037 HOH HOH . G 6 HOH A 38 4038 4038 HOH HOH . G 6 HOH A 39 4039 4039 HOH HOH . G 6 HOH A 40 4040 4040 HOH HOH . G 6 HOH A 41 4041 4041 HOH HOH . G 6 HOH A 42 4042 4042 HOH HOH . G 6 HOH A 43 4043 4043 HOH HOH . G 6 HOH A 44 4044 4044 HOH HOH . G 6 HOH A 45 4045 4045 HOH HOH . G 6 HOH A 46 4046 4046 HOH HOH . G 6 HOH A 47 4047 4047 HOH HOH . G 6 HOH A 48 4048 4048 HOH HOH . G 6 HOH A 49 4049 4050 HOH HOH . G 6 HOH A 50 4050 4051 HOH HOH . G 6 HOH A 51 4051 4052 HOH HOH . G 6 HOH A 52 4052 4053 HOH HOH . G 6 HOH A 53 4053 4054 HOH HOH . G 6 HOH A 54 4054 4055 HOH HOH . G 6 HOH A 55 4055 4056 HOH HOH . G 6 HOH A 56 4056 4057 HOH HOH . G 6 HOH A 57 4057 4058 HOH HOH . G 6 HOH A 58 4058 4059 HOH HOH . G 6 HOH A 59 4059 4060 HOH HOH . G 6 HOH A 60 4060 4061 HOH HOH . G 6 HOH A 61 4061 4062 HOH HOH . G 6 HOH A 62 4062 4063 HOH HOH . G 6 HOH A 63 4063 4064 HOH HOH . G 6 HOH A 64 4064 4065 HOH HOH . G 6 HOH A 65 4065 4066 HOH HOH . G 6 HOH A 66 4066 4067 HOH HOH . G 6 HOH A 67 4067 4068 HOH HOH . G 6 HOH A 68 4068 4069 HOH HOH . G 6 HOH A 69 4069 4070 HOH HOH . G 6 HOH A 70 4070 4071 HOH HOH . G 6 HOH A 71 4071 4072 HOH HOH . G 6 HOH A 72 4072 4073 HOH HOH . G 6 HOH A 73 4073 4075 HOH HOH . G 6 HOH A 74 4074 4077 HOH HOH . G 6 HOH A 75 4075 4078 HOH HOH . G 6 HOH A 76 4076 4080 HOH HOH . G 6 HOH A 77 4077 4081 HOH HOH . G 6 HOH A 78 4078 4082 HOH HOH . G 6 HOH A 79 4079 4083 HOH HOH . G 6 HOH A 80 4080 4084 HOH HOH . G 6 HOH A 81 4081 4085 HOH HOH . G 6 HOH A 82 4082 4086 HOH HOH . G 6 HOH A 83 4083 4087 HOH HOH . G 6 HOH A 84 4084 4088 HOH HOH . G 6 HOH A 85 4085 4089 HOH HOH . G 6 HOH A 86 4086 4090 HOH HOH . G 6 HOH A 87 4087 4091 HOH HOH . G 6 HOH A 88 4088 4092 HOH HOH . G 6 HOH A 89 4089 4093 HOH HOH . G 6 HOH A 90 4090 4094 HOH HOH . G 6 HOH A 91 4091 4095 HOH HOH . G 6 HOH A 92 4092 4096 HOH HOH . G 6 HOH A 93 4093 4097 HOH HOH . G 6 HOH A 94 4094 4098 HOH HOH . G 6 HOH A 95 4095 4099 HOH HOH . G 6 HOH A 96 4096 4101 HOH HOH . G 6 HOH A 97 4097 4102 HOH HOH . G 6 HOH A 98 4098 4103 HOH HOH . G 6 HOH A 99 4099 4104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 -1.268 -20.812 15.07 0.75 21.78 ? C1 GOL 2004 A 1 HETATM 2 O O1 GOL . . . E 4 -2.377 -20.04 15.649 0.74 13.22 ? O1 GOL 2004 A 1 HETATM 3 C C2 GOL . . . E 4 -0.326 -21.848 15.674 0.66 28.97 ? C2 GOL 2004 A 1 HETATM 4 O O2 GOL . . . E 4 -0.532 -22.353 17.002 0.85 19.34 ? O2 GOL 2004 A 1 HETATM 5 C C3 GOL . . . E 4 -0.325 -22.881 14.542 0.69 33.2 ? C3 GOL 2004 A 1 HETATM 6 O O3 GOL . . . E 4 0.242 -24.114 14.909 0.43 42.26 ? O3 GOL 2004 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #