data_4K8N # _model_server_result.job_id 5KkWa_pdKMeGiA7AVbAQXQ _model_server_result.datetime_utc '2025-03-03 02:52:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k8n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 4K8N # _exptl.entry_id 4K8N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 643.918 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3R,4Z)-3-hydroxy-2-[(9E)-octadec-9-enoylamino]octadec-4-en-1-yl dihydrogen phosphate' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.53 _cell.angle_gamma 90 _cell.entry_id 4K8N _cell.length_a 236.983 _cell.length_b 128.758 _cell.length_c 66.663 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K8N _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,M 1 1 B,H,N 2 1 C,I,O 3 1 D,J,P 4 1 E,K,Q 5 1 F,L 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 164 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 163 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 164 _struct_conn.ptnr2_auth_asym_id F _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 163 _struct_conn.ptnr2_symmetry 4_554 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.034 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C36 H70 N O6 P' _chem_comp.formula_weight 643.918 _chem_comp.id 1Q0 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3R,4Z)-3-hydroxy-2-[(9E)-octadec-9-enoylamino]octadec-4-en-1-yl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAG PBR 1Q0 doub 1 n n OAF PBR 1Q0 sing 2 n n PBR OAD 1Q0 sing 3 n n PBR OBN 1Q0 sing 4 n n OBN CBL 1Q0 sing 5 n n CBL CBQ 1Q0 sing 6 n n OAE CBP 1Q0 sing 7 n n CAK CBP 1Q0 sing 8 n n CAK CAJ 1Q0 doub 9 z n CBP CBQ 1Q0 sing 10 n n CBQ NBM 1Q0 sing 11 n n CAJ CAP 1Q0 sing 12 n n NBM CBO 1Q0 sing 13 n n CAP CAU 1Q0 sing 14 n n CBO OAC 1Q0 doub 15 n n CBO CBK 1Q0 sing 16 n n CAU CAZ 1Q0 sing 17 n n CBK CBJ 1Q0 sing 18 n n CBI CBJ 1Q0 sing 19 n n CBI CBD 1Q0 sing 20 n n CAZ CBC 1Q0 sing 21 n n CBD CAY 1Q0 sing 22 n n CBC CBF 1Q0 sing 23 n n CAY CAT 1Q0 sing 24 n n CBF CBH 1Q0 sing 25 n n CAH CAN 1Q0 sing 26 n n CAH CAI 1Q0 doub 27 e n CAT CAO 1Q0 sing 28 n n CAO CAI 1Q0 sing 29 n n CAN CAS 1Q0 sing 30 n n CAS CAX 1Q0 sing 31 n n CBH CBG 1Q0 sing 32 n n CAW CBB 1Q0 sing 33 n n CAW CAR 1Q0 sing 34 n n CBB CBE 1Q0 sing 35 n n CBG CBE 1Q0 sing 36 n n CAX CBA 1Q0 sing 37 n n CAM CAR 1Q0 sing 38 n n CAM CAB 1Q0 sing 39 n n CBA CAV 1Q0 sing 40 n n CAV CAQ 1Q0 sing 41 n n CAQ CAL 1Q0 sing 42 n n CAL CAA 1Q0 sing 43 n n CAB H1 1Q0 sing 44 n n CAB H2 1Q0 sing 45 n n CAB H3 1Q0 sing 46 n n CAM H4 1Q0 sing 47 n n CAM H5 1Q0 sing 48 n n CAR H6 1Q0 sing 49 n n CAW H7 1Q0 sing 50 n n CBB H8 1Q0 sing 51 n n CBE H9 1Q0 sing 52 n n CBG H10 1Q0 sing 53 n n CBG H11 1Q0 sing 54 n n CBH H12 1Q0 sing 55 n n CBH H13 1Q0 sing 56 n n CBF H14 1Q0 sing 57 n n CBF H15 1Q0 sing 58 n n CBC H16 1Q0 sing 59 n n CBC H17 1Q0 sing 60 n n CAZ H18 1Q0 sing 61 n n CAZ H19 1Q0 sing 62 n n CAU H20 1Q0 sing 63 n n CAU H21 1Q0 sing 64 n n CAP H22 1Q0 sing 65 n n CAP H23 1Q0 sing 66 n n CAJ H24 1Q0 sing 67 n n CAK H26 1Q0 sing 68 n n CBQ H28 1Q0 sing 69 n n CBL H29 1Q0 sing 70 n n CBL H30 1Q0 sing 71 n n OAF H31 1Q0 sing 72 n n OAD H32 1Q0 sing 73 n n NBM H33 1Q0 sing 74 n n CBK H34 1Q0 sing 75 n n CBK H35 1Q0 sing 76 n n CBJ H36 1Q0 sing 77 n n CBI H37 1Q0 sing 78 n n CBD H38 1Q0 sing 79 n n CBD H39 1Q0 sing 80 n n CAY H40 1Q0 sing 81 n n CAY H41 1Q0 sing 82 n n CAT H42 1Q0 sing 83 n n CAT H43 1Q0 sing 84 n n CAO H44 1Q0 sing 85 n n CAO H45 1Q0 sing 86 n n CAI H46 1Q0 sing 87 n n CAH H48 1Q0 sing 88 n n CAN H50 1Q0 sing 89 n n CAN H51 1Q0 sing 90 n n CAS H52 1Q0 sing 91 n n CAS H53 1Q0 sing 92 n n CAX H54 1Q0 sing 93 n n CAX H55 1Q0 sing 94 n n CBA H56 1Q0 sing 95 n n CAV H57 1Q0 sing 96 n n CAQ H58 1Q0 sing 97 n n CAQ H59 1Q0 sing 98 n n CAL H60 1Q0 sing 99 n n CAL H61 1Q0 sing 100 n n CAA H62 1Q0 sing 101 n n CAA H63 1Q0 sing 102 n n CAA H64 1Q0 sing 103 n n CAR H65 1Q0 sing 104 n n CAW H66 1Q0 sing 105 n n CBB H67 1Q0 sing 106 n n CBE H68 1Q0 sing 107 n n CBP H25 1Q0 sing 108 n n OAE H27 1Q0 sing 109 n n CBJ H69 1Q0 sing 110 n n CBI H70 1Q0 sing 111 n n CBA H47 1Q0 sing 112 n n CAV H49 1Q0 sing 113 n n # _atom_sites.entry_id 4K8N _atom_sites.fract_transf_matrix[1][1] 0.00422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00026 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 1Q0 A 1 301 1 1Q0 1Q0 . H 2 1Q0 B 1 301 5 1Q0 1Q0 . I 2 1Q0 C 1 301 4 1Q0 1Q0 . J 2 1Q0 D 1 301 2 1Q0 1Q0 . K 2 1Q0 E 1 301 3 1Q0 1Q0 . L 2 1Q0 F 1 301 6 1Q0 1Q0 . M 3 HOH A 1 401 3 HOH HOH . M 3 HOH A 2 402 7 HOH HOH . M 3 HOH A 3 403 9 HOH HOH . M 3 HOH A 4 404 13 HOH HOH . N 3 HOH B 1 401 1 HOH HOH . N 3 HOH B 2 402 5 HOH HOH . N 3 HOH B 3 403 11 HOH HOH . O 3 HOH C 1 401 2 HOH HOH . O 3 HOH C 2 402 6 HOH HOH . O 3 HOH C 3 403 10 HOH HOH . P 3 HOH D 1 401 8 HOH HOH . P 3 HOH D 2 402 12 HOH HOH . Q 3 HOH E 1 401 4 HOH HOH . Q 3 HOH E 2 402 14 HOH HOH . Q 3 HOH E 3 403 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAB 1Q0 . . . J 2 58.693 -91.051 -20.294 1 88.01 ? CAB 1Q0 301 D 1 HETATM 2 C CAM 1Q0 . . . J 2 59.027 -91.77 -19.02 1 88.1 ? CAM 1Q0 301 D 1 HETATM 3 C CAR 1Q0 . . . J 2 57.984 -92.805 -18.725 1 88.14 ? CAR 1Q0 301 D 1 HETATM 4 C CAW 1Q0 . . . J 2 57.423 -92.6 -17.348 1 88.11 ? CAW 1Q0 301 D 1 HETATM 5 C CBB 1Q0 . . . J 2 56.522 -93.725 -16.943 1 87.37 ? CBB 1Q0 301 D 1 HETATM 6 C CBE 1Q0 . . . J 2 57.067 -94.417 -15.732 1 88.09 ? CBE 1Q0 301 D 1 HETATM 7 C CBG 1Q0 . . . J 2 56.02 -94.569 -14.675 1 88.16 ? CBG 1Q0 301 D 1 HETATM 8 C CBH 1Q0 . . . J 2 55.658 -96.005 -14.437 1 88.69 ? CBH 1Q0 301 D 1 HETATM 9 C CBF 1Q0 . . . J 2 54.175 -96.223 -14.387 1 87.96 ? CBF 1Q0 301 D 1 HETATM 10 C CBC 1Q0 . . . J 2 53.804 -97.344 -15.304 1 88.86 ? CBC 1Q0 301 D 1 HETATM 11 C CAZ 1Q0 . . . J 2 52.941 -98.365 -14.625 1 88.23 ? CAZ 1Q0 301 D 1 HETATM 12 C CAU 1Q0 . . . J 2 51.49 -97.981 -14.708 1 88.85 ? CAU 1Q0 301 D 1 HETATM 13 C CAP 1Q0 . . . J 2 50.731 -98.857 -15.665 1 89.28 ? CAP 1Q0 301 D 1 HETATM 14 C CAJ 1Q0 . . . J 2 49.26 -98.809 -15.345 1 88.35 ? CAJ 1Q0 301 D 1 HETATM 15 C CAK 1Q0 . . . J 2 48.839 -98.825 -14.074 1 87.8 ? CAK 1Q0 301 D 1 HETATM 16 C CBP 1Q0 . . . J 2 47.375 -98.886 -13.776 1 87.41 ? CBP 1Q0 301 D 1 HETATM 17 O OAE 1Q0 . . . J 2 47.17 -100.134 -13.194 1 88.34 ? OAE 1Q0 301 D 1 HETATM 18 C CBQ 1Q0 . . . J 2 46.973 -97.829 -12.796 1 86.28 ? CBQ 1Q0 301 D 1 HETATM 19 C CBL 1Q0 . . . J 2 45.48 -97.808 -12.648 1 85.99 ? CBL 1Q0 301 D 1 HETATM 20 O OBN 1Q0 . . . J 2 45.132 -98.438 -11.452 1 85.83 ? OBN 1Q0 301 D 1 HETATM 21 P PBR 1Q0 . . . J 2 43.732 -99.096 -11.418 1 86.08 ? PBR 1Q0 301 D 1 HETATM 22 O OAF 1Q0 . . . J 2 42.714 -98.109 -11 1 84.89 ? OAF 1Q0 301 D 1 HETATM 23 O OAG 1Q0 . . . J 2 43.788 -100.184 -10.419 1 86.82 ? OAG 1Q0 301 D 1 HETATM 24 O OAD 1Q0 . . . J 2 43.344 -99.641 -12.745 1 86.69 ? OAD 1Q0 301 D 1 HETATM 25 N NBM 1Q0 . . . J 2 47.368 -96.627 -13.398 1 85.35 ? NBM 1Q0 301 D 1 HETATM 26 C CBO 1Q0 . . . J 2 48.322 -95.803 -12.785 1 85.08 ? CBO 1Q0 301 D 1 HETATM 27 O OAC 1Q0 . . . J 2 48.8 -96.104 -11.726 1 85.44 ? OAC 1Q0 301 D 1 HETATM 28 C CBK 1Q0 . . . J 2 48.74 -94.532 -13.458 1 84.4 ? CBK 1Q0 301 D 1 HETATM 29 C CBJ 1Q0 . . . J 2 50.127 -94.649 -14.021 1 85.15 ? CBJ 1Q0 301 D 1 HETATM 30 C CBI 1Q0 . . . J 2 50.347 -93.694 -15.158 1 84.75 ? CBI 1Q0 301 D 1 HETATM 31 C CBD 1Q0 . . . J 2 51.8 -93.342 -15.32 1 85.06 ? CBD 1Q0 301 D 1 HETATM 32 C CAY 1Q0 . . . J 2 52.022 -91.857 -15.411 1 84.12 ? CAY 1Q0 301 D 1 HETATM 33 C CAT 1Q0 . . . J 2 53.008 -91.506 -16.485 1 84.66 ? CAT 1Q0 301 D 1 HETATM 34 C CAO 1Q0 . . . J 2 53.766 -90.257 -16.156 1 83.87 ? CAO 1Q0 301 D 1 HETATM 35 C CAI 1Q0 . . . J 2 52.881 -89.069 -16.396 1 82.85 ? CAI 1Q0 301 D 1 HETATM 36 C CAH 1Q0 . . . J 2 53.112 -88.243 -17.423 1 82.65 ? CAH 1Q0 301 D 1 HETATM 37 C CAN 1Q0 . . . J 2 54.384 -88.369 -18.205 1 83.43 ? CAN 1Q0 301 D 1 HETATM 38 C CAS 1Q0 . . . J 2 54.916 -86.988 -18.451 1 83.19 ? CAS 1Q0 301 D 1 HETATM 39 C CAX 1Q0 . . . J 2 56.081 -86.976 -19.401 1 83.62 ? CAX 1Q0 301 D 1 HETATM 40 C CBA 1Q0 . . . J 2 57.083 -88.054 -19.079 1 84.76 ? CBA 1Q0 301 D 1 HETATM 41 C CAV 1Q0 . . . J 2 58.501 -87.705 -19.456 1 85.35 ? CAV 1Q0 301 D 1 HETATM 42 C CAQ 1Q0 . . . J 2 58.834 -86.274 -19.141 1 84.69 ? CAQ 1Q0 301 D 1 HETATM 43 C CAL 1Q0 . . . J 2 60.291 -85.968 -19.299 1 85.31 ? CAL 1Q0 301 D 1 HETATM 44 C CAA 1Q0 . . . J 2 60.509 -84.486 -19.225 1 84.54 ? CAA 1Q0 301 D 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #