data_4K8O # _model_server_result.job_id ygPbbhZ8hc5qv_aQqTvPug _model_server_result.datetime_utc '2024-11-21 22:25:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 4K8O # _exptl.entry_id 4K8O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K8O _cell.length_a 54.26 _cell.length_b 123.98 _cell.length_c 79.91 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_557 x,-y,-z+2 1 0 0 0 -1 0 0 0 -1 0 0 159.82 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 235 A CYS 698 1_555 A SG CYS 249 A CYS 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OG SER 59 A SER 522 1_555 D MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc2 A NE2 HIS 88 A HIS 551 1_555 C NI NI . A NI 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc3 A NE2 HIS 92 A HIS 555 1_555 C NI NI . A NI 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc4 B O2B ATP . A ATP 801 1_555 D MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc5 B O3G ATP . A ATP 801 1_555 D MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4K8O _atom_sites.fract_transf_matrix[1][1] 0.01843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 801 1 ATP ATP . C 3 NI A 1 802 1 NI NI . D 4 MG A 1 803 1 MG MG . E 5 CIT A 1 804 1 CIT CIT . F 6 HOH A 1 901 1 HOH HOH . F 6 HOH A 2 902 3 HOH HOH . F 6 HOH A 3 903 4 HOH HOH . F 6 HOH A 4 904 6 HOH HOH . F 6 HOH A 5 905 7 HOH HOH . F 6 HOH A 6 906 8 HOH HOH . F 6 HOH A 7 907 9 HOH HOH . F 6 HOH A 8 908 10 HOH HOH . F 6 HOH A 9 909 11 HOH HOH . F 6 HOH A 10 910 14 HOH HOH . F 6 HOH A 11 911 15 HOH HOH . F 6 HOH A 12 912 16 HOH HOH . F 6 HOH A 13 913 17 HOH HOH . F 6 HOH A 14 914 18 HOH HOH . F 6 HOH A 15 915 20 HOH HOH . F 6 HOH A 16 916 21 HOH HOH . F 6 HOH A 17 917 22 HOH HOH . F 6 HOH A 18 918 23 HOH HOH . F 6 HOH A 19 919 24 HOH HOH . F 6 HOH A 20 920 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 -8.552 14.954 93.979 1 37.14 ? PG ATP 801 A 1 HETATM 2 O O1G ATP . . . B 2 -8.526 16.402 93.554 1 37.84 ? O1G ATP 801 A 1 HETATM 3 O O2G ATP . . . B 2 -9.3 14.692 95.262 1 37.37 ? O2G ATP 801 A 1 HETATM 4 O O3G ATP . . . B 2 -7.227 14.238 93.883 1 35.65 ? O3G ATP 801 A 1 HETATM 5 P PB ATP . . . B 2 -9.011 14.073 91.336 1 32.25 ? PB ATP 801 A 1 HETATM 6 O O1B ATP . . . B 2 -9.247 15.376 90.609 1 27.1 ? O1B ATP 801 A 1 HETATM 7 O O2B ATP . . . B 2 -7.657 13.409 91.282 1 35.97 ? O2B ATP 801 A 1 HETATM 8 O O3B ATP . . . B 2 -9.472 14.244 92.869 1 32.79 ? O3B ATP 801 A 1 HETATM 9 P PA ATP . . . B 2 -9.765 11.655 90.104 1 48.51 ? PA ATP 801 A 1 HETATM 10 O O1A ATP . . . B 2 -8.804 10.858 90.954 1 50.06 ? O1A ATP 801 A 1 HETATM 11 O O2A ATP . . . B 2 -9.416 12.001 88.678 1 48.41 ? O2A ATP 801 A 1 HETATM 12 O O3A ATP . . . B 2 -10.129 13.02 90.87 1 17.4 ? O3A ATP 801 A 1 HETATM 13 O O5' ATP . . . B 2 -11.2 10.933 90.159 1 43.79 ? O5' ATP 801 A 1 HETATM 14 C C5' ATP . . . B 2 -12.294 11.387 89.365 1 42.73 ? C5' ATP 801 A 1 HETATM 15 C C4' ATP . . . B 2 -13.497 10.518 89.697 1 41.55 ? C4' ATP 801 A 1 HETATM 16 O O4' ATP . . . B 2 -13.318 9.232 89.105 1 41.93 ? O4' ATP 801 A 1 HETATM 17 C C3' ATP . . . B 2 -13.637 10.317 91.199 1 40.38 ? C3' ATP 801 A 1 HETATM 18 O O3' ATP . . . B 2 -14.893 10.837 91.645 1 40.44 ? O3' ATP 801 A 1 HETATM 19 C C2' ATP . . . B 2 -13.583 8.82 91.434 1 40.29 ? C2' ATP 801 A 1 HETATM 20 O O2' ATP . . . B 2 -14.738 8.385 92.157 1 40.51 ? O2' ATP 801 A 1 HETATM 21 C C1' ATP . . . B 2 -13.555 8.19 90.051 1 41.65 ? C1' ATP 801 A 1 HETATM 22 N N9 ATP . . . B 2 -12.456 7.2 89.958 1 43.6 ? N9 ATP 801 A 1 HETATM 23 C C8 ATP . . . B 2 -11.15 7.456 90.161 1 44.22 ? C8 ATP 801 A 1 HETATM 24 N N7 ATP . . . B 2 -10.4 6.337 89.998 1 45.47 ? N7 ATP 801 A 1 HETATM 25 C C5 ATP . . . B 2 -11.239 5.333 89.683 1 46.32 ? C5 ATP 801 A 1 HETATM 26 C C6 ATP . . . B 2 -11.109 3.89 89.379 1 47.05 ? C6 ATP 801 A 1 HETATM 27 N N6 ATP . . . B 2 -9.898 3.282 89.381 1 46.77 ? N6 ATP 801 A 1 HETATM 28 N N1 ATP . . . B 2 -12.239 3.202 89.1 1 47.11 ? N1 ATP 801 A 1 HETATM 29 C C2 ATP . . . B 2 -13.447 3.796 89.096 1 44.8 ? C2 ATP 801 A 1 HETATM 30 N N3 ATP . . . B 2 -13.639 5.1 89.362 1 43.95 ? N3 ATP 801 A 1 HETATM 31 C C4 ATP . . . B 2 -12.593 5.906 89.66 1 45.1 ? C4 ATP 801 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #