data_4K8O # _model_server_result.job_id lIykG89UGKhEdK_4ILWmTA _model_server_result.datetime_utc '2024-11-21 22:41:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":804}' # _entry.id 4K8O # _exptl.entry_id 4K8O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K8O _cell.length_a 54.26 _cell.length_b 123.98 _cell.length_c 79.91 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_557 x,-y,-z+2 1 0 0 0 -1 0 0 0 -1 0 0 159.82 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 235 A CYS 698 1_555 A SG CYS 249 A CYS 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OG SER 59 A SER 522 1_555 D MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc2 A NE2 HIS 88 A HIS 551 1_555 C NI NI . A NI 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc3 A NE2 HIS 92 A HIS 555 1_555 C NI NI . A NI 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc4 B O2B ATP . A ATP 801 1_555 D MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc5 B O3G ATP . A ATP 801 1_555 D MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 119 n n C1 O2 CIT sing 120 n n C1 C2 CIT sing 121 n n O2 HO2 CIT sing 122 n n C2 C3 CIT sing 123 n n C2 H21 CIT sing 124 n n C2 H22 CIT sing 125 n n C3 O7 CIT sing 126 n n C3 C4 CIT sing 127 n n C3 C6 CIT sing 128 n n O7 HO7 CIT sing 129 n n C4 C5 CIT sing 130 n n C4 H41 CIT sing 131 n n C4 H42 CIT sing 132 n n C5 O3 CIT doub 133 n n C5 O4 CIT sing 134 n n O4 HO4 CIT sing 135 n n C6 O5 CIT doub 136 n n C6 O6 CIT sing 137 n n O6 HO6 CIT sing 138 n n # _atom_sites.entry_id 4K8O _atom_sites.fract_transf_matrix[1][1] 0.01843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 801 1 ATP ATP . C 3 NI A 1 802 1 NI NI . D 4 MG A 1 803 1 MG MG . E 5 CIT A 1 804 1 CIT CIT . F 6 HOH A 1 901 1 HOH HOH . F 6 HOH A 2 902 3 HOH HOH . F 6 HOH A 3 903 4 HOH HOH . F 6 HOH A 4 904 6 HOH HOH . F 6 HOH A 5 905 7 HOH HOH . F 6 HOH A 6 906 8 HOH HOH . F 6 HOH A 7 907 9 HOH HOH . F 6 HOH A 8 908 10 HOH HOH . F 6 HOH A 9 909 11 HOH HOH . F 6 HOH A 10 910 14 HOH HOH . F 6 HOH A 11 911 15 HOH HOH . F 6 HOH A 12 912 16 HOH HOH . F 6 HOH A 13 913 17 HOH HOH . F 6 HOH A 14 914 18 HOH HOH . F 6 HOH A 15 915 20 HOH HOH . F 6 HOH A 16 916 21 HOH HOH . F 6 HOH A 17 917 22 HOH HOH . F 6 HOH A 18 918 23 HOH HOH . F 6 HOH A 19 919 24 HOH HOH . F 6 HOH A 20 920 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . E 5 16.298 11.029 75.544 1 94.08 ? C1 CIT 804 A 1 HETATM 2 O O1 CIT . . . E 5 17.355 10.697 74.965 1 93.25 ? O1 CIT 804 A 1 HETATM 3 O O2 CIT . . . E 5 16.045 12.255 75.55 1 94.48 ? O2 CIT 804 A 1 HETATM 4 C C2 CIT . . . E 5 15.344 10.05 76.22 1 94.39 ? C2 CIT 804 A 1 HETATM 5 C C3 CIT . . . E 5 15.898 8.67 76.617 1 93.77 ? C3 CIT 804 A 1 HETATM 6 O O7 CIT . . . E 5 16.909 8.833 77.647 1 94.1 ? O7 CIT 804 A 1 HETATM 7 C C4 CIT . . . E 5 14.789 7.773 77.169 1 93.46 ? C4 CIT 804 A 1 HETATM 8 C C5 CIT . . . E 5 15.37 6.747 78.124 1 91.85 ? C5 CIT 804 A 1 HETATM 9 O O3 CIT . . . E 5 16.445 6.161 77.866 1 91.38 ? O3 CIT 804 A 1 HETATM 10 O O4 CIT . . . E 5 14.803 6.45 79.197 1 91.45 ? O4 CIT 804 A 1 HETATM 11 C C6 CIT . . . E 5 16.518 7.928 75.44 1 95.25 ? C6 CIT 804 A 1 HETATM 12 O O5 CIT . . . E 5 17.702 8.109 75.095 1 94.9 ? O5 CIT 804 A 1 HETATM 13 O O6 CIT . . . E 5 15.84 7.1 74.799 1 95.83 ? O6 CIT 804 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 13 #