data_4K8S # _model_server_result.job_id ONhgSpe2i_kKexHhwq128g _model_server_result.datetime_utc '2024-12-26 23:24:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k8s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4K8S # _exptl.entry_id 4K8S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 504.703 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(3S)-3-[(1R)-2-{[(4S)-6-ethyl-3,4-dihydrospiro[chromene-2,1'-cyclobutan]-4-yl]amino}-1-hydroxyethyl]-4-azabicyclo[11.3.1]heptadeca-1(17),13,15-trien-5-one" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.24 _cell.angle_gamma 90 _cell.entry_id 4K8S _cell.length_a 81.841 _cell.length_b 102.563 _cell.length_c 101.318 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K8S _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1 B,E 2 1 C,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 158 A CYS 155 1_555 A SG CYS 362 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? disulf ? disulf2 A SG CYS 220 A CYS 217 1_555 A SG CYS 385 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf3 A SG CYS 272 A CYS 269 1_555 A SG CYS 322 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf4 B SG CYS 158 B CYS 155 1_555 B SG CYS 362 B CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf5 B SG CYS 220 B CYS 217 1_555 B SG CYS 385 B CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? disulf ? disulf6 B SG CYS 272 B CYS 269 1_555 B SG CYS 322 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf7 C SG CYS 158 C CYS 155 1_555 C SG CYS 362 C CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf8 C SG CYS 220 C CYS 217 1_555 C SG CYS 385 C CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf9 C SG CYS 272 C CYS 269 1_555 C SG CYS 322 C CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C32 H44 N2 O3' _chem_comp.formula_weight 504.703 _chem_comp.id 1QT _chem_comp.mon_nstd_flag . _chem_comp.name "(3S)-3-[(1R)-2-{[(4S)-6-ethyl-3,4-dihydrospiro[chromene-2,1'-cyclobutan]-4-yl]amino}-1-hydroxyethyl]-4-azabicyclo[11.3.1]heptadeca-1(17),13,15-trien-5-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C14 1QT sing 1 n n C13 C12 1QT sing 2 n n C14 C15 1QT doub 3 n y C14 C19 1QT sing 4 n y C12 C11 1QT sing 5 n n C15 C16 1QT sing 6 n y C19 C18 1QT doub 7 n y C11 C10 1QT sing 8 n n C16 C17 1QT doub 9 n y C18 C17 1QT sing 10 n y C18 C20 1QT sing 11 n n C20 C5 1QT sing 12 n n C10 C9 1QT sing 13 n n C9 C8 1QT sing 14 n n C5 N1 1QT sing 15 n n C5 C21 1QT sing 16 n n N1 C6 1QT sing 17 n n C8 C7 1QT sing 18 n n O2 C21 1QT sing 19 n n C21 C22 1QT sing 20 n n C6 C7 1QT sing 21 n n C6 O1 1QT doub 22 n n C22 N2 1QT sing 23 n n N2 C23 1QT sing 24 n n C31 C32 1QT sing 25 n n C31 C29 1QT sing 26 n n C30 C29 1QT doub 27 n y C30 C25 1QT sing 28 n y C23 C25 1QT sing 29 n n C23 C24 1QT sing 30 n n C29 C28 1QT sing 31 n y C25 C26 1QT doub 32 n y C24 C1 1QT sing 33 n n C28 C27 1QT doub 34 n y C26 C27 1QT sing 35 n y C26 O3 1QT sing 36 n n C1 O3 1QT sing 37 n n C1 C2 1QT sing 38 n n C1 C4 1QT sing 39 n n C2 C3 1QT sing 40 n n C4 C3 1QT sing 41 n n C2 H1 1QT sing 42 n n C2 H2 1QT sing 43 n n C3 H3 1QT sing 44 n n C3 H4 1QT sing 45 n n C4 H5 1QT sing 46 n n C4 H6 1QT sing 47 n n C24 H7 1QT sing 48 n n C24 H8 1QT sing 49 n n C27 H9 1QT sing 50 n n C28 H10 1QT sing 51 n n C31 H11 1QT sing 52 n n C31 H12 1QT sing 53 n n C32 H13 1QT sing 54 n n C32 H14 1QT sing 55 n n C32 H15 1QT sing 56 n n C30 H16 1QT sing 57 n n C23 H17 1QT sing 58 n n N2 H18 1QT sing 59 n n C22 H20 1QT sing 60 n n C22 H21 1QT sing 61 n n C21 H22 1QT sing 62 n n O2 H23 1QT sing 63 n n C5 H24 1QT sing 64 n n C20 H25 1QT sing 65 n n C20 H26 1QT sing 66 n n C19 H27 1QT sing 67 n n C17 H28 1QT sing 68 n n C16 H29 1QT sing 69 n n C15 H30 1QT sing 70 n n C13 H31 1QT sing 71 n n C13 H32 1QT sing 72 n n C12 H33 1QT sing 73 n n C12 H34 1QT sing 74 n n C11 H35 1QT sing 75 n n C11 H36 1QT sing 76 n n C10 H37 1QT sing 77 n n C10 H38 1QT sing 78 n n C9 H39 1QT sing 79 n n C9 H40 1QT sing 80 n n C8 H41 1QT sing 81 n n C8 H42 1QT sing 82 n n C7 H43 1QT sing 83 n n C7 H44 1QT sing 84 n n N1 H45 1QT sing 85 n n # _atom_sites.entry_id 4K8S _atom_sites.fract_transf_matrix[1][1] 0.012219 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003329 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00975 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01023 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 1QT A 1 401 1 1QT UNL . E 2 1QT B 1 401 1 1QT UNL . F 2 1QT C 1 401 1 1QT UNL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 1QT . . . D 2 62.791 -7.577 25.821 1 37.05 ? C2 1QT 401 A 1 HETATM 2 C C3 1QT . . . D 2 61.564 -8.296 26.419 1 33.73 ? C3 1QT 401 A 1 HETATM 3 C C4 1QT . . . D 2 62.114 -9.659 25.881 1 33.79 ? C4 1QT 401 A 1 HETATM 4 C C1 1QT . . . D 2 63.078 -8.848 24.965 1 39.61 ? C1 1QT 401 A 1 HETATM 5 C C24 1QT . . . D 2 62.605 -8.74 23.492 1 39.76 ? C24 1QT 401 A 1 HETATM 6 O O3 1QT . . . D 2 64.425 -9.279 25.016 1 38.21 ? O3 1QT 401 A 1 HETATM 7 C C26 1QT . . . D 2 65.346 -8.636 24.298 1 37 ? C26 1QT 401 A 1 HETATM 8 C C27 1QT . . . D 2 66.664 -8.702 24.751 1 37.81 ? C27 1QT 401 A 1 HETATM 9 C C28 1QT . . . D 2 67.647 -8.007 24.061 1 38.64 ? C28 1QT 401 A 1 HETATM 10 C C29 1QT . . . D 2 67.297 -7.298 22.914 1 41.61 ? C29 1QT 401 A 1 HETATM 11 C C31 1QT . . . D 2 68.318 -6.561 22.112 1 43.72 ? C31 1QT 401 A 1 HETATM 12 C C32 1QT . . . D 2 68.236 -5.102 22.524 1 44.79 ? C32 1QT 401 A 1 HETATM 13 C C30 1QT . . . D 2 66.001 -7.234 22.472 1 38.03 ? C30 1QT 401 A 1 HETATM 14 C C25 1QT . . . D 2 65.017 -7.919 23.155 1 37.12 ? C25 1QT 401 A 1 HETATM 15 C C23 1QT . . . D 2 63.578 -7.834 22.641 1 40.28 ? C23 1QT 401 A 1 HETATM 16 N N2 1QT . . . D 2 63.537 -8.116 21.156 1 38.28 ? N2 1QT 401 A 1 HETATM 17 C C22 1QT . . . D 2 63.728 -9.541 20.725 1 38.33 ? C22 1QT 401 A 1 HETATM 18 C C21 1QT . . . D 2 64.238 -9.464 19.262 1 39.81 ? C21 1QT 401 A 1 HETATM 19 O O2 1QT . . . D 2 65.153 -8.372 19.187 1 35.02 ? O2 1QT 401 A 1 HETATM 20 C C5 1QT . . . D 2 64.992 -10.72 18.728 1 41.55 ? C5 1QT 401 A 1 HETATM 21 C C20 1QT . . . D 2 65.401 -10.514 17.269 1 40.88 ? C20 1QT 401 A 1 HETATM 22 C C18 1QT . . . D 2 65.843 -11.801 16.635 1 40.23 ? C18 1QT 401 A 1 HETATM 23 C C19 1QT . . . D 2 64.942 -12.567 15.916 1 40.74 ? C19 1QT 401 A 1 HETATM 24 C C17 1QT . . . D 2 67.161 -12.215 16.821 1 39.66 ? C17 1QT 401 A 1 HETATM 25 C C16 1QT . . . D 2 67.573 -13.417 16.261 1 41.93 ? C16 1QT 401 A 1 HETATM 26 C C15 1QT . . . D 2 66.678 -14.196 15.516 1 44.28 ? C15 1QT 401 A 1 HETATM 27 C C14 1QT . . . D 2 65.353 -13.77 15.335 1 46.54 ? C14 1QT 401 A 1 HETATM 28 C C13 1QT . . . D 2 64.379 -14.646 14.524 1 45.73 ? C13 1QT 401 A 1 HETATM 29 C C12 1QT . . . D 2 63.361 -15.316 15.452 1 51.19 ? C12 1QT 401 A 1 HETATM 30 C C11 1QT . . . D 2 64.007 -16.453 16.252 1 53.11 ? C11 1QT 401 A 1 HETATM 31 C C10 1QT . . . D 2 63.085 -16.939 17.39 1 51.54 ? C10 1QT 401 A 1 HETATM 32 C C9 1QT . . . D 2 62.808 -15.751 18.333 1 57.33 ? C9 1QT 401 A 1 HETATM 33 C C8 1QT . . . D 2 64.075 -15.121 18.959 1 44.21 ? C8 1QT 401 A 1 HETATM 34 C C7 1QT . . . D 2 63.631 -14.075 20.004 1 45.6 ? C7 1QT 401 A 1 HETATM 35 C C6 1QT . . . D 2 64.466 -12.809 19.928 1 45.15 ? C6 1QT 401 A 1 HETATM 36 O O1 1QT . . . D 2 65.323 -12.609 20.776 1 49.99 ? O1 1QT 401 A 1 HETATM 37 N N1 1QT . . . D 2 64.228 -11.978 18.903 1 44.21 ? N1 1QT 401 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #