data_4K9B # _model_server_result.job_id 85kmkUs6UuhBnfXudqbt8g _model_server_result.datetime_utc '2024-11-08 03:20:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 4K9B # _exptl.entry_id 4K9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K9B _cell.length_a 85.311 _cell.length_b 98.278 _cell.length_c 130.032 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 F O2' 5GP . A 5GP 603 1_555 G P AMP . A AMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.575 ? covale ? covale2 F P 5GP . A 5GP 603 1_555 G O3' AMP . A AMP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.588 ? metalc ? metalc1 A NE2 HIS 233 A HIS 378 1_555 D ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc2 A SG CYS 239 A CYS 384 1_555 D ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc3 A SG CYS 240 A CYS 385 1_555 D ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc4 A SG CYS 247 A CYS 392 1_555 D ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? hydrog WATSON-CRICK hydrog1 B N1 DA 2 D DA 2 1_555 C N3 DT 17 E DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 DA 2 D DA 2 1_555 C O4 DT 17 E DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 DA 3 D DA 3 1_555 C N3 DT 16 E DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N6 DA 3 D DA 3 1_555 C O4 DT 16 E DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N3 DT 4 D DT 4 1_555 C N1 DA 15 E DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O4 DT 4 D DT 4 1_555 C N6 DA 15 E DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DT 5 D DT 5 1_555 C N1 DA 14 E DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O4 DT 5 D DT 5 1_555 C N6 DA 14 E DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 DG 6 D DG 6 1_555 C N3 DC 13 E DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N2 DG 6 D DG 6 1_555 C O2 DC 13 E DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O6 DG 6 D DG 6 1_555 C N4 DC 13 E DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 DC 7 D DC 7 1_555 C N1 DG 12 E DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N4 DC 7 D DC 7 1_555 C O6 DG 12 E DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O2 DC 7 D DC 7 1_555 C N2 DG 12 E DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N3 DC 8 D DC 8 1_555 C N1 DG 11 E DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N4 DC 8 D DC 8 1_555 C O6 DG 11 E DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O2 DC 8 D DC 8 1_555 C N2 DG 11 E DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N1 DG 9 D DG 9 1_555 C N3 DC 10 E DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N2 DG 9 D DG 9 1_555 C O2 DC 10 E DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O6 DG 9 D DG 9 1_555 C N4 DC 10 E DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N1 DA 10 D DA 10 1_555 C N3 DT 9 E DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N6 DA 10 D DA 10 1_555 C O4 DT 9 E DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N1 DA 11 D DA 11 1_555 C N3 DT 8 E DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N6 DA 11 D DA 11 1_555 C O4 DT 8 E DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N1 DG 12 D DG 12 1_555 C N3 DC 7 E DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N2 DG 12 D DG 12 1_555 C O2 DC 7 E DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B O6 DG 12 D DG 12 1_555 C N4 DC 7 E DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N1 DA 13 D DA 13 1_555 C N3 DT 6 E DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N6 DA 13 D DA 13 1_555 C O4 DT 6 E DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B N3 DC 14 D DC 14 1_555 C N1 DG 5 E DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B N4 DC 14 D DC 14 1_555 C O6 DG 5 E DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 B O2 DC 14 D DC 14 1_555 C N2 DG 5 E DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 B N1 DG 15 D DG 15 1_555 C N3 DC 4 E DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 B N2 DG 15 D DG 15 1_555 C O2 DC 4 E DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 B O6 DG 15 D DG 15 1_555 C N4 DC 4 E DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4K9B _atom_sites.fract_transf_matrix[1][1] 0.011722 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 601 1 ZN ZN . E 5 PO4 A 1 602 1 PO4 PO4 . F 6 5GP A 1 603 1 5GP DRG . G 7 AMP A 1 604 1 AMP DRG . H 8 HOH A 1 701 1 HOH HOH . H 8 HOH A 2 702 2 HOH HOH . H 8 HOH A 3 703 3 HOH HOH . H 8 HOH A 4 704 4 HOH HOH . H 8 HOH A 5 705 5 HOH HOH . H 8 HOH A 6 706 7 HOH HOH . H 8 HOH A 7 707 8 HOH HOH . H 8 HOH A 8 708 9 HOH HOH . H 8 HOH A 9 709 10 HOH HOH . H 8 HOH A 10 710 11 HOH HOH . H 8 HOH A 11 711 12 HOH HOH . H 8 HOH A 12 712 13 HOH HOH . H 8 HOH A 13 713 14 HOH HOH . H 8 HOH A 14 714 15 HOH HOH . H 8 HOH A 15 715 18 HOH HOH . H 8 HOH A 16 716 20 HOH HOH . H 8 HOH A 17 717 22 HOH HOH . H 8 HOH A 18 718 25 HOH HOH . H 8 HOH A 19 719 26 HOH HOH . H 8 HOH A 20 720 27 HOH HOH . H 8 HOH A 21 721 28 HOH HOH . H 8 HOH A 22 722 29 HOH HOH . H 8 HOH A 23 723 30 HOH HOH . H 8 HOH A 24 724 31 HOH HOH . H 8 HOH A 25 725 32 HOH HOH . H 8 HOH A 26 726 33 HOH HOH . H 8 HOH A 27 727 35 HOH HOH . H 8 HOH A 28 728 37 HOH HOH . H 8 HOH A 29 729 38 HOH HOH . H 8 HOH A 30 730 39 HOH HOH . H 8 HOH A 31 731 40 HOH HOH . H 8 HOH A 32 732 41 HOH HOH . H 8 HOH A 33 733 42 HOH HOH . H 8 HOH A 34 734 45 HOH HOH . H 8 HOH A 35 735 47 HOH HOH . H 8 HOH A 36 736 48 HOH HOH . H 8 HOH A 37 737 49 HOH HOH . H 8 HOH A 38 738 50 HOH HOH . H 8 HOH A 39 739 51 HOH HOH . H 8 HOH A 40 740 52 HOH HOH . H 8 HOH A 41 741 53 HOH HOH . H 8 HOH A 42 742 57 HOH HOH . H 8 HOH A 43 743 58 HOH HOH . H 8 HOH A 44 744 59 HOH HOH . H 8 HOH A 45 745 60 HOH HOH . H 8 HOH A 46 746 61 HOH HOH . H 8 HOH A 47 747 63 HOH HOH . H 8 HOH A 48 748 64 HOH HOH . H 8 HOH A 49 749 66 HOH HOH . H 8 HOH A 50 750 67 HOH HOH . H 8 HOH A 51 751 68 HOH HOH . H 8 HOH A 52 752 69 HOH HOH . H 8 HOH A 53 753 70 HOH HOH . H 8 HOH A 54 754 71 HOH HOH . H 8 HOH A 55 755 72 HOH HOH . H 8 HOH A 56 756 73 HOH HOH . H 8 HOH A 57 757 74 HOH HOH . H 8 HOH A 58 758 75 HOH HOH . H 8 HOH A 59 759 77 HOH HOH . H 8 HOH A 60 760 78 HOH HOH . H 8 HOH A 61 761 79 HOH HOH . H 8 HOH A 62 762 80 HOH HOH . H 8 HOH A 63 763 81 HOH HOH . H 8 HOH A 64 764 82 HOH HOH . H 8 HOH A 65 765 83 HOH HOH . H 8 HOH A 66 766 85 HOH HOH . H 8 HOH A 67 767 86 HOH HOH . H 8 HOH A 68 768 90 HOH HOH . H 8 HOH A 69 769 91 HOH HOH . H 8 HOH A 70 770 92 HOH HOH . H 8 HOH A 71 771 93 HOH HOH . H 8 HOH A 72 772 94 HOH HOH . H 8 HOH A 73 773 95 HOH HOH . H 8 HOH A 74 774 97 HOH HOH . H 8 HOH A 75 775 98 HOH HOH . H 8 HOH A 76 776 99 HOH HOH . H 8 HOH A 77 777 100 HOH HOH . H 8 HOH A 78 778 101 HOH HOH . H 8 HOH A 79 779 102 HOH HOH . H 8 HOH A 80 780 103 HOH HOH . H 8 HOH A 81 781 104 HOH HOH . H 8 HOH A 82 782 105 HOH HOH . H 8 HOH A 83 783 107 HOH HOH . H 8 HOH A 84 784 108 HOH HOH . H 8 HOH A 85 785 109 HOH HOH . H 8 HOH A 86 786 110 HOH HOH . H 8 HOH A 87 787 111 HOH HOH . H 8 HOH A 88 788 114 HOH HOH . H 8 HOH A 89 789 115 HOH HOH . H 8 HOH A 90 790 116 HOH HOH . H 8 HOH A 91 791 118 HOH HOH . H 8 HOH A 92 792 120 HOH HOH . H 8 HOH A 93 793 121 HOH HOH . H 8 HOH A 94 794 122 HOH HOH . H 8 HOH A 95 795 123 HOH HOH . H 8 HOH A 96 796 124 HOH HOH . H 8 HOH A 97 797 125 HOH HOH . H 8 HOH A 98 798 126 HOH HOH . H 8 HOH A 99 799 127 HOH HOH . H 8 HOH A 100 800 128 HOH HOH . H 8 HOH A 101 801 130 HOH HOH . H 8 HOH A 102 802 131 HOH HOH . H 8 HOH A 103 803 132 HOH HOH . H 8 HOH A 104 804 133 HOH HOH . H 8 HOH A 105 805 134 HOH HOH . H 8 HOH A 106 806 136 HOH HOH . H 8 HOH A 107 807 137 HOH HOH . H 8 HOH A 108 808 139 HOH HOH . H 8 HOH A 109 809 140 HOH HOH . H 8 HOH A 110 810 141 HOH HOH . H 8 HOH A 111 811 143 HOH HOH . H 8 HOH A 112 812 145 HOH HOH . H 8 HOH A 113 813 146 HOH HOH . H 8 HOH A 114 814 147 HOH HOH . H 8 HOH A 115 815 149 HOH HOH . H 8 HOH A 116 816 150 HOH HOH . H 8 HOH A 117 817 151 HOH HOH . H 8 HOH A 118 818 152 HOH HOH . H 8 HOH A 119 819 153 HOH HOH . H 8 HOH A 120 820 154 HOH HOH . H 8 HOH A 121 821 155 HOH HOH . H 8 HOH A 122 822 156 HOH HOH . H 8 HOH A 123 823 157 HOH HOH . H 8 HOH A 124 824 159 HOH HOH . H 8 HOH A 125 825 161 HOH HOH . H 8 HOH A 126 826 163 HOH HOH . H 8 HOH A 127 827 164 HOH HOH . H 8 HOH A 128 828 165 HOH HOH . I 8 HOH D 1 101 6 HOH HOH . I 8 HOH D 2 102 16 HOH HOH . I 8 HOH D 3 103 19 HOH HOH . I 8 HOH D 4 104 24 HOH HOH . I 8 HOH D 5 105 34 HOH HOH . I 8 HOH D 6 106 36 HOH HOH . I 8 HOH D 7 107 43 HOH HOH . I 8 HOH D 8 108 44 HOH HOH . I 8 HOH D 9 109 46 HOH HOH . I 8 HOH D 10 110 55 HOH HOH . I 8 HOH D 11 111 65 HOH HOH . I 8 HOH D 12 112 84 HOH HOH . I 8 HOH D 13 113 87 HOH HOH . I 8 HOH D 14 114 88 HOH HOH . I 8 HOH D 15 115 89 HOH HOH . I 8 HOH D 16 116 96 HOH HOH . I 8 HOH D 17 117 106 HOH HOH . I 8 HOH D 18 118 112 HOH HOH . I 8 HOH D 19 119 113 HOH HOH . I 8 HOH D 20 120 117 HOH HOH . I 8 HOH D 21 121 119 HOH HOH . I 8 HOH D 22 122 135 HOH HOH . I 8 HOH D 23 123 148 HOH HOH . I 8 HOH D 24 124 160 HOH HOH . I 8 HOH D 25 125 162 HOH HOH . J 8 HOH E 1 101 17 HOH HOH . J 8 HOH E 2 102 21 HOH HOH . J 8 HOH E 3 103 23 HOH HOH . J 8 HOH E 4 104 54 HOH HOH . J 8 HOH E 5 105 56 HOH HOH . J 8 HOH E 6 106 62 HOH HOH . J 8 HOH E 7 107 76 HOH HOH . J 8 HOH E 8 108 129 HOH HOH . J 8 HOH E 9 109 138 HOH HOH . J 8 HOH E 10 110 142 HOH HOH . J 8 HOH E 11 111 144 HOH HOH . J 8 HOH E 12 112 158 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 175.854 _atom_site.Cartn_y 304.081 _atom_site.Cartn_z 185.067 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 601 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #