data_4K9H # _model_server_result.job_id 251YlGW5lTQVe0DZFzWmaQ _model_server_result.datetime_utc '2025-01-10 11:49:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4K9H # _exptl.entry_id 4K9H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 610.666 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-cyclopentyl-N-[(2S,3R)-3-hydroxy-1-phenyl-4-{[3-(trifluoromethyl)benzyl]amino}butan-2-yl]-6-oxo-5-(2-oxopyrrolidin-1-yl)-1,6-dihydropyridine-3-carboxamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.01 _cell.angle_gamma 90 _cell.entry_id 4K9H _cell.length_a 82.538 _cell.length_b 103.304 _cell.length_c 100.856 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 158 A CYS 155 1_555 A SG CYS 362 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf2 A SG CYS 220 A CYS 217 1_555 A SG CYS 385 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? disulf ? disulf3 A SG CYS 272 A CYS 269 1_555 A SG CYS 322 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf4 B SG CYS 158 B CYS 155 1_555 B SG CYS 362 B CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? disulf ? disulf5 B SG CYS 220 B CYS 217 1_555 B SG CYS 385 B CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf6 B SG CYS 272 B CYS 269 1_555 B SG CYS 322 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf7 C SG CYS 158 C CYS 155 1_555 C SG CYS 362 C CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? disulf ? disulf8 C SG CYS 220 C CYS 217 1_555 C SG CYS 385 C CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? disulf ? disulf9 C SG CYS 272 C CYS 269 1_555 C SG CYS 322 C CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'C33 H37 F3 N4 O4' _chem_comp.formula_weight 610.666 _chem_comp.id 1QU _chem_comp.mon_nstd_flag . _chem_comp.name 1-cyclopentyl-N-[(2S,3R)-3-hydroxy-1-phenyl-4-{[3-(trifluoromethyl)benzyl]amino}butan-2-yl]-6-oxo-5-(2-oxopyrrolidin-1-yl)-1,6-dihydropyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-((1S,2R)-1-benzyl-2-hydroxy-3-((3-trifluoromethyl)benzyl)amino)propyl)-1-cyclopentyl-6-oxo-5-(2-oxo-1-pyrrolidinyl)-1,6-dihydro-3-pyridinecarboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 1QU sing 1 n n C8 C7 1QU sing 2 n n C9 C10 1QU sing 3 n n C24 C25 1QU doub 4 n y C24 C23 1QU sing 5 n y C25 C20 1QU sing 6 n y C10 C6 1QU sing 7 n n C23 C22 1QU doub 8 n y C7 C6 1QU sing 9 n n C6 N2 1QU sing 10 n n C20 C31 1QU sing 11 n n C20 C21 1QU doub 12 n y C22 C21 1QU sing 13 n y C31 C27 1QU sing 14 n n N2 C11 1QU sing 15 n n N2 C5 1QU sing 16 n n C11 C12 1QU doub 17 n n O4 C5 1QU doub 18 n n N3 C27 1QU sing 19 n n N3 C26 1QU sing 20 n n C27 C28 1QU sing 21 n n C5 C33 1QU sing 22 n n O3 C28 1QU sing 23 n n C28 C29 1QU sing 24 n n C12 C26 1QU sing 25 n n C12 C13 1QU sing 26 n n C26 O2 1QU doub 27 n n C33 C13 1QU doub 28 n n C33 N1 1QU sing 29 n n O1 C1 1QU doub 30 n n C29 N4 1QU sing 31 n n N1 C1 1QU sing 32 n n N1 C4 1QU sing 33 n n C1 C2 1QU sing 34 n n N4 C30 1QU sing 35 n n F1 C32 1QU sing 36 n n C4 C3 1QU sing 37 n n F3 C32 1QU sing 38 n n C2 C3 1QU sing 39 n n C32 F2 1QU sing 40 n n C32 C16 1QU sing 41 n n C15 C16 1QU doub 42 n y C15 C14 1QU sing 43 n y C30 C14 1QU sing 44 n n C16 C17 1QU sing 45 n y C14 C19 1QU doub 46 n y C17 C18 1QU doub 47 n y C19 C18 1QU sing 48 n y C2 H1 1QU sing 49 n n C2 H2 1QU sing 50 n n C3 H3 1QU sing 51 n n C3 H4 1QU sing 52 n n C4 H5 1QU sing 53 n n C4 H6 1QU sing 54 n n C13 H7 1QU sing 55 n n C6 H8 1QU sing 56 n n C7 H9 1QU sing 57 n n C7 H10 1QU sing 58 n n C8 H11 1QU sing 59 n n C8 H12 1QU sing 60 n n C9 H13 1QU sing 61 n n C9 H14 1QU sing 62 n n C10 H15 1QU sing 63 n n C10 H16 1QU sing 64 n n C11 H17 1QU sing 65 n n N3 H18 1QU sing 66 n n C27 H19 1QU sing 67 n n C31 H20 1QU sing 68 n n C31 H21 1QU sing 69 n n C21 H22 1QU sing 70 n n C22 H23 1QU sing 71 n n C23 H24 1QU sing 72 n n C24 H25 1QU sing 73 n n C25 H26 1QU sing 74 n n C28 H27 1QU sing 75 n n O3 H28 1QU sing 76 n n C29 H29 1QU sing 77 n n C29 H30 1QU sing 78 n n N4 H31 1QU sing 79 n n C30 H33 1QU sing 80 n n C30 H34 1QU sing 81 n n C15 H35 1QU sing 82 n n C19 H36 1QU sing 83 n n C18 H37 1QU sing 84 n n C17 H38 1QU sing 85 n n # _atom_sites.entry_id 4K9H _atom_sites.fract_transf_matrix[1][1] 0.012116 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003024 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 1QU A 1 401 1 1QU UNL . E 2 1QU B 1 401 1 1QU UNL . F 2 1QU C 1 401 1 1QU UNL . G 3 HOH A 1 501 4 HOH HOH . G 3 HOH A 2 502 6 HOH HOH . H 3 HOH B 1 501 3 HOH HOH . H 3 HOH B 2 502 5 HOH HOH . H 3 HOH B 3 503 8 HOH HOH . I 3 HOH C 1 501 1 HOH HOH . I 3 HOH C 2 502 2 HOH HOH . I 3 HOH C 3 503 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 1QU . . . D 2 60.616 -15.851 20.533 1 38.78 ? O1 1QU 401 A 1 HETATM 2 C C1 1QU . . . D 2 61.409 -16.41 21.322 1 39.87 ? C1 1QU 401 A 1 HETATM 3 C C2 1QU . . . D 2 60.931 -17.299 22.431 1 38.36 ? C2 1QU 401 A 1 HETATM 4 C C3 1QU . . . D 2 62.227 -17.636 23.229 1 39.78 ? C3 1QU 401 A 1 HETATM 5 C C4 1QU . . . D 2 63.393 -17.181 22.361 1 41.64 ? C4 1QU 401 A 1 HETATM 6 N N1 1QU . . . D 2 62.775 -16.36 21.307 1 36.35 ? N1 1QU 401 A 1 HETATM 7 C C33 1QU . . . D 2 63.463 -15.694 20.407 1 34.88 ? C33 1QU 401 A 1 HETATM 8 C C13 1QU . . . D 2 64.233 -14.547 20.708 1 33.22 ? C13 1QU 401 A 1 HETATM 9 C C5 1QU . . . D 2 63.344 -16.138 19.097 1 37.15 ? C5 1QU 401 A 1 HETATM 10 O O4 1QU . . . D 2 62.653 -17.098 18.788 1 45.54 ? O4 1QU 401 A 1 HETATM 11 N N2 1QU . . . D 2 63.975 -15.487 18.108 1 36 ? N2 1QU 401 A 1 HETATM 12 C C6 1QU . . . D 2 63.812 -16.031 16.762 1 42.54 ? C6 1QU 401 A 1 HETATM 13 C C7 1QU . . . D 2 65.204 -16.314 16.113 1 40.45 ? C7 1QU 401 A 1 HETATM 14 C C8 1QU . . . D 2 65.191 -15.555 14.816 1 42.42 ? C8 1QU 401 A 1 HETATM 15 C C9 1QU . . . D 2 64.197 -14.431 15.062 1 44.35 ? C9 1QU 401 A 1 HETATM 16 C C10 1QU . . . D 2 63.063 -15.063 15.838 1 39.53 ? C10 1QU 401 A 1 HETATM 17 C C11 1QU . . . D 2 64.719 -14.365 18.369 1 33.62 ? C11 1QU 401 A 1 HETATM 18 C C12 1QU . . . D 2 64.897 -13.899 19.662 1 35.65 ? C12 1QU 401 A 1 HETATM 19 C C26 1QU . . . D 2 65.742 -12.615 19.881 1 36.27 ? C26 1QU 401 A 1 HETATM 20 O O2 1QU . . . D 2 66.281 -12.437 20.963 1 41.59 ? O2 1QU 401 A 1 HETATM 21 N N3 1QU . . . D 2 65.562 -11.633 18.987 1 31.85 ? N3 1QU 401 A 1 HETATM 22 C C27 1QU . . . D 2 66.35 -10.39 19.003 1 33.76 ? C27 1QU 401 A 1 HETATM 23 C C31 1QU . . . D 2 66.96 -10.181 17.59 1 35.26 ? C31 1QU 401 A 1 HETATM 24 C C20 1QU . . . D 2 67.531 -11.504 17.01 1 38.46 ? C20 1QU 401 A 1 HETATM 25 C C21 1QU . . . D 2 68.316 -12.367 17.779 1 40.82 ? C21 1QU 401 A 1 HETATM 26 C C22 1QU . . . D 2 68.793 -13.563 17.24 1 39.92 ? C22 1QU 401 A 1 HETATM 27 C C23 1QU . . . D 2 68.538 -13.884 15.918 1 39.15 ? C23 1QU 401 A 1 HETATM 28 C C24 1QU . . . D 2 67.78 -13.017 15.153 1 39.46 ? C24 1QU 401 A 1 HETATM 29 C C25 1QU . . . D 2 67.266 -11.859 15.705 1 41.75 ? C25 1QU 401 A 1 HETATM 30 C C28 1QU . . . D 2 65.668 -9.133 19.456 1 34.73 ? C28 1QU 401 A 1 HETATM 31 O O3 1QU . . . D 2 66.571 -8.039 19.273 1 35.83 ? O3 1QU 401 A 1 HETATM 32 C C29 1QU . . . D 2 65.296 -9.175 20.941 1 35.2 ? C29 1QU 401 A 1 HETATM 33 N N4 1QU . . . D 2 64.923 -7.829 21.349 1 33.56 ? N4 1QU 401 A 1 HETATM 34 C C30 1QU . . . D 2 64.881 -7.708 22.845 1 39.02 ? C30 1QU 401 A 1 HETATM 35 C C14 1QU . . . D 2 66.356 -7.557 23.362 1 39.42 ? C14 1QU 401 A 1 HETATM 36 C C15 1QU . . . D 2 67.262 -6.642 22.779 1 34.83 ? C15 1QU 401 A 1 HETATM 37 C C19 1QU . . . D 2 66.771 -8.357 24.412 1 40.06 ? C19 1QU 401 A 1 HETATM 38 C C18 1QU . . . D 2 68.096 -8.222 24.852 1 36.17 ? C18 1QU 401 A 1 HETATM 39 C C17 1QU . . . D 2 68.972 -7.32 24.271 1 35.78 ? C17 1QU 401 A 1 HETATM 40 C C16 1QU . . . D 2 68.565 -6.49 23.24 1 47.39 ? C16 1QU 401 A 1 HETATM 41 C C32 1QU . . . D 2 69.567 -5.456 22.574 1 53.54 ? C32 1QU 401 A 1 HETATM 42 F F2 1QU . . . D 2 70.702 -5.266 23.226 1 54.12 ? F2 1QU 401 A 1 HETATM 43 F F3 1QU . . . D 2 69.064 -4.237 22.388 1 52.44 ? F3 1QU 401 A 1 HETATM 44 F F1 1QU . . . D 2 69.856 -5.964 21.401 1 59.51 ? F1 1QU 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #