data_4K9H # _model_server_result.job_id 1kfrLQQhxNqNOwrA9RykxQ _model_server_result.datetime_utc '2025-01-25 10:27:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 4K9H # _exptl.entry_id 4K9H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 610.666 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-cyclopentyl-N-[(2S,3R)-3-hydroxy-1-phenyl-4-{[3-(trifluoromethyl)benzyl]amino}butan-2-yl]-6-oxo-5-(2-oxopyrrolidin-1-yl)-1,6-dihydropyridine-3-carboxamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.01 _cell.angle_gamma 90 _cell.entry_id 4K9H _cell.length_a 82.538 _cell.length_b 103.304 _cell.length_c 100.856 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 158 A CYS 155 1_555 A SG CYS 362 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf2 A SG CYS 220 A CYS 217 1_555 A SG CYS 385 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? disulf ? disulf3 A SG CYS 272 A CYS 269 1_555 A SG CYS 322 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf4 B SG CYS 158 B CYS 155 1_555 B SG CYS 362 B CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? disulf ? disulf5 B SG CYS 220 B CYS 217 1_555 B SG CYS 385 B CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf6 B SG CYS 272 B CYS 269 1_555 B SG CYS 322 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf7 C SG CYS 158 C CYS 155 1_555 C SG CYS 362 C CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? disulf ? disulf8 C SG CYS 220 C CYS 217 1_555 C SG CYS 385 C CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? disulf ? disulf9 C SG CYS 272 C CYS 269 1_555 C SG CYS 322 C CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'C33 H37 F3 N4 O4' _chem_comp.formula_weight 610.666 _chem_comp.id 1QU _chem_comp.mon_nstd_flag . _chem_comp.name 1-cyclopentyl-N-[(2S,3R)-3-hydroxy-1-phenyl-4-{[3-(trifluoromethyl)benzyl]amino}butan-2-yl]-6-oxo-5-(2-oxopyrrolidin-1-yl)-1,6-dihydropyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-((1S,2R)-1-benzyl-2-hydroxy-3-((3-trifluoromethyl)benzyl)amino)propyl)-1-cyclopentyl-6-oxo-5-(2-oxo-1-pyrrolidinyl)-1,6-dihydro-3-pyridinecarboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 1QU sing 1 n n C8 C7 1QU sing 2 n n C9 C10 1QU sing 3 n n C24 C25 1QU doub 4 n y C24 C23 1QU sing 5 n y C25 C20 1QU sing 6 n y C10 C6 1QU sing 7 n n C23 C22 1QU doub 8 n y C7 C6 1QU sing 9 n n C6 N2 1QU sing 10 n n C20 C31 1QU sing 11 n n C20 C21 1QU doub 12 n y C22 C21 1QU sing 13 n y C31 C27 1QU sing 14 n n N2 C11 1QU sing 15 n n N2 C5 1QU sing 16 n n C11 C12 1QU doub 17 n n O4 C5 1QU doub 18 n n N3 C27 1QU sing 19 n n N3 C26 1QU sing 20 n n C27 C28 1QU sing 21 n n C5 C33 1QU sing 22 n n O3 C28 1QU sing 23 n n C28 C29 1QU sing 24 n n C12 C26 1QU sing 25 n n C12 C13 1QU sing 26 n n C26 O2 1QU doub 27 n n C33 C13 1QU doub 28 n n C33 N1 1QU sing 29 n n O1 C1 1QU doub 30 n n C29 N4 1QU sing 31 n n N1 C1 1QU sing 32 n n N1 C4 1QU sing 33 n n C1 C2 1QU sing 34 n n N4 C30 1QU sing 35 n n F1 C32 1QU sing 36 n n C4 C3 1QU sing 37 n n F3 C32 1QU sing 38 n n C2 C3 1QU sing 39 n n C32 F2 1QU sing 40 n n C32 C16 1QU sing 41 n n C15 C16 1QU doub 42 n y C15 C14 1QU sing 43 n y C30 C14 1QU sing 44 n n C16 C17 1QU sing 45 n y C14 C19 1QU doub 46 n y C17 C18 1QU doub 47 n y C19 C18 1QU sing 48 n y C2 H1 1QU sing 49 n n C2 H2 1QU sing 50 n n C3 H3 1QU sing 51 n n C3 H4 1QU sing 52 n n C4 H5 1QU sing 53 n n C4 H6 1QU sing 54 n n C13 H7 1QU sing 55 n n C6 H8 1QU sing 56 n n C7 H9 1QU sing 57 n n C7 H10 1QU sing 58 n n C8 H11 1QU sing 59 n n C8 H12 1QU sing 60 n n C9 H13 1QU sing 61 n n C9 H14 1QU sing 62 n n C10 H15 1QU sing 63 n n C10 H16 1QU sing 64 n n C11 H17 1QU sing 65 n n N3 H18 1QU sing 66 n n C27 H19 1QU sing 67 n n C31 H20 1QU sing 68 n n C31 H21 1QU sing 69 n n C21 H22 1QU sing 70 n n C22 H23 1QU sing 71 n n C23 H24 1QU sing 72 n n C24 H25 1QU sing 73 n n C25 H26 1QU sing 74 n n C28 H27 1QU sing 75 n n O3 H28 1QU sing 76 n n C29 H29 1QU sing 77 n n C29 H30 1QU sing 78 n n N4 H31 1QU sing 79 n n C30 H33 1QU sing 80 n n C30 H34 1QU sing 81 n n C15 H35 1QU sing 82 n n C19 H36 1QU sing 83 n n C18 H37 1QU sing 84 n n C17 H38 1QU sing 85 n n # _atom_sites.entry_id 4K9H _atom_sites.fract_transf_matrix[1][1] 0.012116 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003024 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 1QU A 1 401 1 1QU UNL . E 2 1QU B 1 401 1 1QU UNL . F 2 1QU C 1 401 1 1QU UNL . G 3 HOH A 1 501 4 HOH HOH . G 3 HOH A 2 502 6 HOH HOH . H 3 HOH B 1 501 3 HOH HOH . H 3 HOH B 2 502 5 HOH HOH . H 3 HOH B 3 503 8 HOH HOH . I 3 HOH C 1 501 1 HOH HOH . I 3 HOH C 2 502 2 HOH HOH . I 3 HOH C 3 503 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 1QU . . . E 2 23.827 39.774 16.597 1 64.03 ? O1 1QU 401 B 1 HETATM 2 C C1 1QU . . . E 2 24.074 38.891 17.384 1 47.1 ? C1 1QU 401 B 1 HETATM 3 C C2 1QU . . . E 2 22.965 37.981 17.898 1 41.21 ? C2 1QU 401 B 1 HETATM 4 C C3 1QU . . . E 2 23.66 37.362 19.101 1 41.1 ? C3 1QU 401 B 1 HETATM 5 C C4 1QU . . . E 2 25.197 37.592 18.964 1 33.89 ? C4 1QU 401 B 1 HETATM 6 N N1 1QU . . . E 2 25.255 38.725 17.979 1 39.13 ? N1 1QU 401 B 1 HETATM 7 C C33 1QU . . . E 2 26.408 39.34 17.775 1 34.98 ? C33 1QU 401 B 1 HETATM 8 C C13 1QU . . . E 2 27.194 39.128 16.632 1 32.33 ? C13 1QU 401 B 1 HETATM 9 C C5 1QU . . . E 2 26.91 40.138 18.793 1 34.09 ? C5 1QU 401 B 1 HETATM 10 O O4 1QU . . . E 2 26.269 40.316 19.798 1 35.5 ? O4 1QU 401 B 1 HETATM 11 N N2 1QU . . . E 2 28.136 40.687 18.587 1 33.79 ? N2 1QU 401 B 1 HETATM 12 C C6 1QU . . . E 2 28.963 41.501 19.414 1 35.96 ? C6 1QU 401 B 1 HETATM 13 C C7 1QU . . . E 2 29.519 40.819 20.618 1 32.79 ? C7 1QU 401 B 1 HETATM 14 C C8 1QU . . . E 2 30.759 41.727 20.588 1 35.01 ? C8 1QU 401 B 1 HETATM 15 C C9 1QU . . . E 2 30.241 43.175 20.336 1 36.69 ? C9 1QU 401 B 1 HETATM 16 C C10 1QU . . . E 2 28.828 43.011 19.681 1 37.93 ? C10 1QU 401 B 1 HETATM 17 C C11 1QU . . . E 2 28.92 40.472 17.429 1 25.44 ? C11 1QU 401 B 1 HETATM 18 C C12 1QU . . . E 2 28.42 39.742 16.433 1 28.53 ? C12 1QU 401 B 1 HETATM 19 C C26 1QU . . . E 2 29.377 39.577 15.287 1 29.87 ? C26 1QU 401 B 1 HETATM 20 O O2 1QU . . . E 2 29.013 39.539 14.151 1 31.63 ? O2 1QU 401 B 1 HETATM 21 N N3 1QU . . . E 2 30.652 39.517 15.625 1 31.37 ? N3 1QU 401 B 1 HETATM 22 C C27 1QU . . . E 2 31.745 39.481 14.634 1 30.33 ? C27 1QU 401 B 1 HETATM 23 C C31 1QU . . . E 2 32.885 40.416 15.129 1 31.45 ? C31 1QU 401 B 1 HETATM 24 C C20 1QU . . . E 2 32.356 41.772 15.644 1 32.77 ? C20 1QU 401 B 1 HETATM 25 C C21 1QU . . . E 2 31.295 42.397 15.011 1 31.39 ? C21 1QU 401 B 1 HETATM 26 C C22 1QU . . . E 2 30.737 43.583 15.506 1 30.71 ? C22 1QU 401 B 1 HETATM 27 C C23 1QU . . . E 2 31.301 44.173 16.654 1 32.97 ? C23 1QU 401 B 1 HETATM 28 C C24 1QU . . . E 2 32.358 43.521 17.3 1 34.35 ? C24 1QU 401 B 1 HETATM 29 C C25 1QU . . . E 2 32.868 42.313 16.818 1 32.14 ? C25 1QU 401 B 1 HETATM 30 C C28 1QU . . . E 2 32.344 38.101 14.427 1 30.81 ? C28 1QU 401 B 1 HETATM 31 O O3 1QU . . . E 2 33.586 38.225 13.623 1 30.1 ? O3 1QU 401 B 1 HETATM 32 C C29 1QU . . . E 2 31.417 37.152 13.647 1 33.23 ? C29 1QU 401 B 1 HETATM 33 N N4 1QU . . . E 2 32.222 35.985 13.169 1 38.8 ? N4 1QU 401 B 1 HETATM 34 C C30 1QU . . . E 2 31.497 35.156 12.174 1 40.62 ? C30 1QU 401 B 1 HETATM 35 C C14 1QU . . . E 2 31.498 35.928 10.846 1 42.06 ? C14 1QU 401 B 1 HETATM 36 C C15 1QU . . . E 2 32.707 36.396 10.289 1 38.73 ? C15 1QU 401 B 1 HETATM 37 C C19 1QU . . . E 2 30.296 36.149 10.197 1 38.96 ? C19 1QU 401 B 1 HETATM 38 C C18 1QU . . . E 2 30.349 36.857 8.983 1 40.87 ? C18 1QU 401 B 1 HETATM 39 C C17 1QU . . . E 2 31.534 37.343 8.445 1 33.7 ? C17 1QU 401 B 1 HETATM 40 C C16 1QU . . . E 2 32.731 37.111 9.108 1 40 ? C16 1QU 401 B 1 HETATM 41 C C32 1QU . . . E 2 34.047 37.584 8.489 1 44.96 ? C32 1QU 401 B 1 HETATM 42 F F2 1QU . . . E 2 34.665 36.475 8.236 1 46.87 ? F2 1QU 401 B 1 HETATM 43 F F3 1QU . . . E 2 34.859 38.303 9.256 1 50.54 ? F3 1QU 401 B 1 HETATM 44 F F1 1QU . . . E 2 33.847 38.212 7.326 1 50.42 ? F1 1QU 401 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 44 #