data_4K9H
#
_model_server_result.job_id            eUubIqT2b2F9yDB5AZDwzg 
_model_server_result.datetime_utc      '2025-01-10 11:44:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4k9h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    4K9H 
#
_exptl.entry_id    4K9H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              610.666 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-cyclopentyl-N-[(2S,3R)-3-hydroxy-1-phenyl-4-{[3-(trifluoromethyl)benzyl]amino}butan-2-yl]-6-oxo-5-(2-oxopyrrolidin-1-yl)-1,6-dihydropyridine-3-carboxamide 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.01 
_cell.angle_gamma         90 
_cell.entry_id            4K9H 
_cell.length_a            82.538 
_cell.length_b            103.304 
_cell.length_c            100.856 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4K9H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G 1 1 
B,E,H 2 1 
C,F,I 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 158 A CYS 155 1_555 A SG CYS 362 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
disulf ? disulf2 A SG CYS 220 A CYS 217 1_555 A SG CYS 385 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
disulf ? disulf3 A SG CYS 272 A CYS 269 1_555 A SG CYS 322 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf4 B SG CYS 158 B CYS 155 1_555 B SG CYS 362 B CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
disulf ? disulf5 B SG CYS 220 B CYS 217 1_555 B SG CYS 385 B CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
disulf ? disulf6 B SG CYS 272 B CYS 269 1_555 B SG CYS 322 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
disulf ? disulf7 C SG CYS 158 C CYS 155 1_555 C SG CYS 362 C CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
disulf ? disulf8 C SG CYS 220 C CYS 217 1_555 C SG CYS 385 C CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
disulf ? disulf9 C SG CYS 272 C CYS 269 1_555 C SG CYS 322 C CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
#
_chem_comp.formula           'C33 H37 F3 N4 O4' 
_chem_comp.formula_weight    610.666 
_chem_comp.id                1QU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-cyclopentyl-N-[(2S,3R)-3-hydroxy-1-phenyl-4-{[3-(trifluoromethyl)benzyl]amino}butan-2-yl]-6-oxo-5-(2-oxopyrrolidin-1-yl)-1,6-dihydropyridine-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     N-((1S,2R)-1-benzyl-2-hydroxy-3-((3-trifluoromethyl)benzyl)amino)propyl)-1-cyclopentyl-6-oxo-5-(2-oxo-1-pyrrolidinyl)-1,6-dihydro-3-pyridinecarboxamide 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C9 1QU sing 1 n n 
C8 C7 1QU sing 2 n n 
C9 C10 1QU sing 3 n n 
C24 C25 1QU doub 4 n y 
C24 C23 1QU sing 5 n y 
C25 C20 1QU sing 6 n y 
C10 C6 1QU sing 7 n n 
C23 C22 1QU doub 8 n y 
C7 C6 1QU sing 9 n n 
C6 N2 1QU sing 10 n n 
C20 C31 1QU sing 11 n n 
C20 C21 1QU doub 12 n y 
C22 C21 1QU sing 13 n y 
C31 C27 1QU sing 14 n n 
N2 C11 1QU sing 15 n n 
N2 C5 1QU sing 16 n n 
C11 C12 1QU doub 17 n n 
O4 C5 1QU doub 18 n n 
N3 C27 1QU sing 19 n n 
N3 C26 1QU sing 20 n n 
C27 C28 1QU sing 21 n n 
C5 C33 1QU sing 22 n n 
O3 C28 1QU sing 23 n n 
C28 C29 1QU sing 24 n n 
C12 C26 1QU sing 25 n n 
C12 C13 1QU sing 26 n n 
C26 O2 1QU doub 27 n n 
C33 C13 1QU doub 28 n n 
C33 N1 1QU sing 29 n n 
O1 C1 1QU doub 30 n n 
C29 N4 1QU sing 31 n n 
N1 C1 1QU sing 32 n n 
N1 C4 1QU sing 33 n n 
C1 C2 1QU sing 34 n n 
N4 C30 1QU sing 35 n n 
F1 C32 1QU sing 36 n n 
C4 C3 1QU sing 37 n n 
F3 C32 1QU sing 38 n n 
C2 C3 1QU sing 39 n n 
C32 F2 1QU sing 40 n n 
C32 C16 1QU sing 41 n n 
C15 C16 1QU doub 42 n y 
C15 C14 1QU sing 43 n y 
C30 C14 1QU sing 44 n n 
C16 C17 1QU sing 45 n y 
C14 C19 1QU doub 46 n y 
C17 C18 1QU doub 47 n y 
C19 C18 1QU sing 48 n y 
C2 H1 1QU sing 49 n n 
C2 H2 1QU sing 50 n n 
C3 H3 1QU sing 51 n n 
C3 H4 1QU sing 52 n n 
C4 H5 1QU sing 53 n n 
C4 H6 1QU sing 54 n n 
C13 H7 1QU sing 55 n n 
C6 H8 1QU sing 56 n n 
C7 H9 1QU sing 57 n n 
C7 H10 1QU sing 58 n n 
C8 H11 1QU sing 59 n n 
C8 H12 1QU sing 60 n n 
C9 H13 1QU sing 61 n n 
C9 H14 1QU sing 62 n n 
C10 H15 1QU sing 63 n n 
C10 H16 1QU sing 64 n n 
C11 H17 1QU sing 65 n n 
N3 H18 1QU sing 66 n n 
C27 H19 1QU sing 67 n n 
C31 H20 1QU sing 68 n n 
C31 H21 1QU sing 69 n n 
C21 H22 1QU sing 70 n n 
C22 H23 1QU sing 71 n n 
C23 H24 1QU sing 72 n n 
C24 H25 1QU sing 73 n n 
C25 H26 1QU sing 74 n n 
C28 H27 1QU sing 75 n n 
O3 H28 1QU sing 76 n n 
C29 H29 1QU sing 77 n n 
C29 H30 1QU sing 78 n n 
N4 H31 1QU sing 79 n n 
C30 H33 1QU sing 80 n n 
C30 H34 1QU sing 81 n n 
C15 H35 1QU sing 82 n n 
C19 H36 1QU sing 83 n n 
C18 H37 1QU sing 84 n n 
C17 H38 1QU sing 85 n n 
#
_atom_sites.entry_id                     4K9H 
_atom_sites.fract_transf_matrix[1][1]    0.012116 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003024 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00968 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010219 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 1QU A 1 401 1 1QU UNL . 
E 2 1QU B 1 401 1 1QU UNL . 
F 2 1QU C 1 401 1 1QU UNL . 
G 3 HOH A 1 501 4 HOH HOH . 
G 3 HOH A 2 502 6 HOH HOH . 
H 3 HOH B 1 501 3 HOH HOH . 
H 3 HOH B 2 502 5 HOH HOH . 
H 3 HOH B 3 503 8 HOH HOH . 
I 3 HOH C 1 501 1 HOH HOH . 
I 3 HOH C 2 502 2 HOH HOH . 
I 3 HOH C 3 503 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 1QU . . . F 2 9.729 -2.12 52.271 1 62.79 ? O1 1QU 401 C 1 
HETATM 2 C C1 1QU . . . F 2 9.719 -1.734 51.127 1 47.61 ? C1 1QU 401 C 1 
HETATM 3 C C2 1QU . . . F 2 10.221 -0.33 50.865 1 42.5 ? C2 1QU 401 C 1 
HETATM 4 C C3 1QU . . . F 2 9.56 -0.129 49.488 1 49.04 ? C3 1QU 401 C 1 
HETATM 5 C C4 1QU . . . F 2 9.278 -1.514 48.852 1 31.96 ? C4 1QU 401 C 1 
HETATM 6 N N1 1QU . . . F 2 9.086 -2.33 50.08 1 44.51 ? N1 1QU 401 C 1 
HETATM 7 C C33 1QU . . . F 2 8.582 -3.567 49.886 1 33.94 ? C33 1QU 401 C 1 
HETATM 8 C C13 1QU . . . F 2 9.379 -4.703 50.038 1 32.99 ? C13 1QU 401 C 1 
HETATM 9 C C5 1QU . . . F 2 7.297 -3.624 49.358 1 35.48 ? C5 1QU 401 C 1 
HETATM 10 O O4 1QU . . . F 2 6.609 -2.616 49.237 1 36.93 ? O4 1QU 401 C 1 
HETATM 11 N N2 1QU . . . F 2 6.806 -4.835 49.034 1 36.54 ? N2 1QU 401 C 1 
HETATM 12 C C6 1QU . . . F 2 5.531 -5.269 48.468 1 39.18 ? C6 1QU 401 C 1 
HETATM 13 C C7 1QU . . . F 2 5.253 -4.879 47.03 1 37.4 ? C7 1QU 401 C 1 
HETATM 14 C C8 1QU . . . F 2 4.394 -6.129 46.8 1 38.83 ? C8 1QU 401 C 1 
HETATM 15 C C9 1QU . . . F 2 3.719 -6.413 48.196 1 39.94 ? C9 1QU 401 C 1 
HETATM 16 C C10 1QU . . . F 2 4.152 -5.206 49.096 1 43.65 ? C10 1QU 401 C 1 
HETATM 17 C C11 1QU . . . F 2 7.607 -5.98 49.196 1 34.85 ? C11 1QU 401 C 1 
HETATM 18 C C12 1QU . . . F 2 8.87 -5.953 49.697 1 34.81 ? C12 1QU 401 C 1 
HETATM 19 C C26 1QU . . . F 2 9.572 -7.322 49.788 1 33.83 ? C26 1QU 401 C 1 
HETATM 20 O O2 1QU . . . F 2 10.294 -7.616 50.736 1 36.57 ? O2 1QU 401 C 1 
HETATM 21 N N3 1QU . . . F 2 9.283 -8.17 48.818 1 31.32 ? N3 1QU 401 C 1 
HETATM 22 C C27 1QU . . . F 2 9.753 -9.536 48.809 1 32.08 ? C27 1QU 401 C 1 
HETATM 23 C C31 1QU . . . F 2 8.558 -10.493 48.385 1 35.46 ? C31 1QU 401 C 1 
HETATM 24 C C20 1QU . . . F 2 7.213 -10.144 49.02 1 34.11 ? C20 1QU 401 C 1 
HETATM 25 C C21 1QU . . . F 2 7.118 -9.832 50.345 1 33.52 ? C21 1QU 401 C 1 
HETATM 26 C C22 1QU . . . F 2 5.901 -9.478 50.96 1 34.13 ? C22 1QU 401 C 1 
HETATM 27 C C23 1QU . . . F 2 4.745 -9.47 50.203 1 36 ? C23 1QU 401 C 1 
HETATM 28 C C24 1QU . . . F 2 4.846 -9.812 48.862 1 34.21 ? C24 1QU 401 C 1 
HETATM 29 C C25 1QU . . . F 2 6.058 -10.138 48.269 1 36.88 ? C25 1QU 401 C 1 
HETATM 30 C C28 1QU . . . F 2 10.976 -9.671 47.843 1 35.92 ? C28 1QU 401 C 1 
HETATM 31 O O3 1QU . . . F 2 11.398 -11.071 47.683 1 34.34 ? O3 1QU 401 C 1 
HETATM 32 C C29 1QU . . . F 2 12.245 -8.886 48.335 1 36.28 ? C29 1QU 401 C 1 
HETATM 33 N N4 1QU . . . F 2 13.419 -9.578 47.685 1 35.82 ? N4 1QU 401 C 1 
HETATM 34 C C30 1QU . . . F 2 14.693 -9.271 48.334 1 36.92 ? C30 1QU 401 C 1 
HETATM 35 C C14 1QU . . . F 2 14.877 -10.251 49.496 1 37.58 ? C14 1QU 401 C 1 
HETATM 36 C C15 1QU . . . F 2 14.782 -11.627 49.302 1 38.15 ? C15 1QU 401 C 1 
HETATM 37 C C19 1QU . . . F 2 15.139 -9.742 50.754 1 36.29 ? C19 1QU 401 C 1 
HETATM 38 C C18 1QU . . . F 2 15.359 -10.586 51.833 1 34.62 ? C18 1QU 401 C 1 
HETATM 39 C C17 1QU . . . F 2 15.251 -11.961 51.641 1 38.46 ? C17 1QU 401 C 1 
HETATM 40 C C16 1QU . . . F 2 14.989 -12.474 50.382 1 40.93 ? C16 1QU 401 C 1 
HETATM 41 C C32 1QU . . . F 2 14.852 -13.989 50.232 1 47.48 ? C32 1QU 401 C 1 
HETATM 42 F F2 1QU . . . F 2 15.221 -14.545 51.387 1 55.21 ? F2 1QU 401 C 1 
HETATM 43 F F3 1QU . . . F 2 15.478 -14.566 49.18 1 39.73 ? F3 1QU 401 C 1 
HETATM 44 F F1 1QU . . . F 2 13.554 -14.139 50.108 1 49.45 ? F1 1QU 401 C 1 
#
_model_server_stats.io_time_ms              77 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           44 
#