data_4K9T # _model_server_result.job_id '_srK2HUsvymLq-LrBkqydw' _model_server_result.datetime_utc '2024-11-24 14:04:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k9t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 4K9T # _exptl.entry_id 4K9T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 524.7 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-(methyl{[2-(propan-2-yl)-1,3-thiazol-4-yl]methyl}carbamoyl)-N-(4-{[(1,3-thiazol-5-ylmethoxy)carbonyl]amino}butyl)-L-valinamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K9T _cell.length_a 77.5 _cell.length_b 100.81 _cell.length_c 130.13 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K9T _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N28 1RD . A 1RD 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? # _chem_comp.formula 'C23 H36 N6 O4 S2' _chem_comp.formula_weight 524.7 _chem_comp.id 1RD _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-(methyl{[2-(propan-2-yl)-1,3-thiazol-4-yl]methyl}carbamoyl)-N-(4-{[(1,3-thiazol-5-ylmethoxy)carbonyl]amino}butyl)-L-valinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S35 C34 1RD sing 1 n y S35 C04 1RD sing 2 n y C34 C06 1RD doub 3 n y C09 N08 1RD sing 4 n n C02 C04 1RD sing 5 n n C02 C03 1RD sing 6 n n C02 C01 1RD sing 7 n n C04 N05 1RD doub 8 n y C06 N05 1RD sing 9 n y C06 C07 1RD sing 10 n n N08 C07 1RD sing 11 n n N08 C10 1RD sing 12 n n O11 C10 1RD doub 13 n n O15 C14 1RD doub 14 n n C10 N12 1RD sing 15 n n C17 N16 1RD sing 16 n n C17 C18 1RD sing 17 n n N12 C13 1RD sing 18 n n C14 N16 1RD sing 19 n n C14 C13 1RD sing 20 n n C18 C19 1RD sing 21 n n C13 C31 1RD sing 22 n n O23 C22 1RD doub 23 n n C25 O24 1RD sing 24 n n C25 C26 1RD sing 25 n n C32 C31 1RD sing 26 n n C19 C20 1RD sing 27 n n C31 C33 1RD sing 28 n n C22 O24 1RD sing 29 n n C22 N21 1RD sing 30 n n C27 C26 1RD doub 31 n y C27 N28 1RD sing 32 n y C26 S30 1RD sing 33 n y C20 N21 1RD sing 34 n n N28 C29 1RD doub 35 n y S30 C29 1RD sing 36 n y C25 H1 1RD sing 37 n n C25 H2 1RD sing 38 n n C29 H3 1RD sing 39 n n C27 H4 1RD sing 40 n n N21 H5 1RD sing 41 n n C20 H6 1RD sing 42 n n C20 H7 1RD sing 43 n n C19 H8 1RD sing 44 n n C19 H9 1RD sing 45 n n C18 H10 1RD sing 46 n n C18 H11 1RD sing 47 n n C17 H12 1RD sing 48 n n C17 H13 1RD sing 49 n n N16 H14 1RD sing 50 n n C13 H15 1RD sing 51 n n C31 H16 1RD sing 52 n n C33 H17 1RD sing 53 n n C33 H18 1RD sing 54 n n C33 H19 1RD sing 55 n n C32 H20 1RD sing 56 n n C32 H21 1RD sing 57 n n C32 H22 1RD sing 58 n n N12 H23 1RD sing 59 n n C09 H24 1RD sing 60 n n C09 H25 1RD sing 61 n n C09 H26 1RD sing 62 n n C07 H27 1RD sing 63 n n C07 H28 1RD sing 64 n n C34 H29 1RD sing 65 n n C02 H30 1RD sing 66 n n C03 H31 1RD sing 67 n n C03 H32 1RD sing 68 n n C03 H33 1RD sing 69 n n C01 H34 1RD sing 70 n n C01 H35 1RD sing 71 n n C01 H36 1RD sing 72 n n # _atom_sites.entry_id 4K9T _atom_sites.fract_transf_matrix[1][1] 0.012903 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00992 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 1RD A 1 602 600 1RD 4AW . D 3 1RD A 1 603 700 1RD 4AW . E 4 HOH A 1 701 1 HOH HOH . E 4 HOH A 2 702 2 HOH HOH . E 4 HOH A 3 703 3 HOH HOH . E 4 HOH A 4 704 4 HOH HOH . E 4 HOH A 5 705 5 HOH HOH . E 4 HOH A 6 706 6 HOH HOH . E 4 HOH A 7 707 7 HOH HOH . E 4 HOH A 8 708 8 HOH HOH . E 4 HOH A 9 709 9 HOH HOH . E 4 HOH A 10 710 10 HOH HOH . E 4 HOH A 11 711 11 HOH HOH . E 4 HOH A 12 712 12 HOH HOH . E 4 HOH A 13 713 13 HOH HOH . E 4 HOH A 14 714 14 HOH HOH . E 4 HOH A 15 715 15 HOH HOH . E 4 HOH A 16 716 16 HOH HOH . E 4 HOH A 17 717 17 HOH HOH . E 4 HOH A 18 718 18 HOH HOH . E 4 HOH A 19 719 19 HOH HOH . E 4 HOH A 20 720 20 HOH HOH . E 4 HOH A 21 721 21 HOH HOH . E 4 HOH A 22 722 22 HOH HOH . E 4 HOH A 23 723 23 HOH HOH . E 4 HOH A 24 724 24 HOH HOH . E 4 HOH A 25 725 25 HOH HOH . E 4 HOH A 26 726 26 HOH HOH . E 4 HOH A 27 727 27 HOH HOH . E 4 HOH A 28 728 28 HOH HOH . E 4 HOH A 29 729 29 HOH HOH . E 4 HOH A 30 730 30 HOH HOH . E 4 HOH A 31 731 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 1RD . . . D 3 21.229 16.547 -13.774 1 72.9 ? O23 1RD 603 A 1 HETATM 2 C C22 1RD . . . D 3 20.164 15.999 -14.034 1 66.82 ? C22 1RD 603 A 1 HETATM 3 O O24 1RD . . . D 3 18.928 16.582 -13.534 1 61.14 ? O24 1RD 603 A 1 HETATM 4 C C25 1RD . . . D 3 18.971 17.874 -12.915 1 61.77 ? C25 1RD 603 A 1 HETATM 5 C C26 1RD . . . D 3 18.781 17.639 -11.432 1 71.12 ? C26 1RD 603 A 1 HETATM 6 S S30 1RD . . . D 3 19.002 18.966 -10.351 1 76.25 ? S30 1RD 603 A 1 HETATM 7 C C29 1RD . . . D 3 18.666 18.079 -8.915 1 72.41 ? C29 1RD 603 A 1 HETATM 8 N N28 1RD . . . D 3 18.398 16.811 -9.341 1 73.07 ? N28 1RD 603 A 1 HETATM 9 C C27 1RD . . . D 3 18.45 16.528 -10.678 1 64.53 ? C27 1RD 603 A 1 HETATM 10 N N21 1RD . . . D 3 20.091 14.888 -14.77 1 67.81 ? N21 1RD 603 A 1 HETATM 11 C C20 1RD . . . D 3 21.177 13.92 -14.846 1 63.94 ? C20 1RD 603 A 1 HETATM 12 C C19 1RD . . . D 3 21.373 13.24 -13.502 1 61.99 ? C19 1RD 603 A 1 HETATM 13 C C18 1RD . . . D 3 22.811 12.777 -13.353 1 64.84 ? C18 1RD 603 A 1 HETATM 14 C C17 1RD . . . D 3 22.986 11.954 -12.088 1 62.79 ? C17 1RD 603 A 1 HETATM 15 N N16 1RD . . . D 3 22.495 12.664 -10.929 1 62.71 ? N16 1RD 603 A 1 HETATM 16 C C14 1RD . . . D 3 23.287 13.449 -10.202 1 64.3 ? C14 1RD 603 A 1 HETATM 17 O O15 1RD . . . D 3 24.089 14.228 -10.701 1 60.3 ? O15 1RD 603 A 1 HETATM 18 C C13 1RD . . . D 3 23.129 13.346 -8.704 1 65.48 ? C13 1RD 603 A 1 HETATM 19 C C31 1RD . . . D 3 21.644 13.574 -8.352 1 63.26 ? C31 1RD 603 A 1 HETATM 20 C C33 1RD . . . D 3 21.192 14.972 -8.734 1 61.83 ? C33 1RD 603 A 1 HETATM 21 C C32 1RD . . . D 3 21.29 13.278 -6.893 1 65.49 ? C32 1RD 603 A 1 HETATM 22 N N12 1RD . . . D 3 24.012 14.288 -8.028 1 64.35 ? N12 1RD 603 A 1 HETATM 23 C C10 1RD . . . D 3 24.883 14.058 -7.031 1 63.64 ? C10 1RD 603 A 1 HETATM 24 O O11 1RD . . . D 3 24.85 13.033 -6.356 1 61.54 ? O11 1RD 603 A 1 HETATM 25 N N08 1RD . . . D 3 25.779 15.033 -6.776 1 62.02 ? N08 1RD 603 A 1 HETATM 26 C C09 1RD . . . D 3 26.571 15.06 -5.569 1 60.18 ? C09 1RD 603 A 1 HETATM 27 C C07 1RD . . . D 3 26.033 16.164 -7.658 1 61.16 ? C07 1RD 603 A 1 HETATM 28 C C06 1RD . . . D 3 25.064 17.314 -7.468 1 67.36 ? C06 1RD 603 A 1 HETATM 29 N N05 1RD . . . D 3 25.486 18.535 -7.015 1 73.42 ? N05 1RD 603 A 1 HETATM 30 C C34 1RD . . . D 3 23.681 17.28 -7.743 1 74 ? C34 1RD 603 A 1 HETATM 31 S S35 1RD . . . D 3 22.993 18.846 -7.398 1 83.62 ? S35 1RD 603 A 1 HETATM 32 C C04 1RD . . . D 3 24.526 19.473 -6.909 1 70.99 ? C04 1RD 603 A 1 HETATM 33 C C02 1RD . . . D 3 24.552 20.871 -6.475 1 78.07 ? C02 1RD 603 A 1 HETATM 34 C C03 1RD . . . D 3 26.003 21.366 -6.438 1 83.17 ? C03 1RD 603 A 1 HETATM 35 C C01 1RD . . . D 3 23.842 21.028 -5.131 1 78.48 ? C01 1RD 603 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 119 _model_server_stats.create_model_time_ms 117 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #