data_4K9U
#
_model_server_result.job_id            6hVHDT8KIbwQQhHXNx_iPQ 
_model_server_result.datetime_utc      '2024-10-11 02:22:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4k9u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    4K9U 
#
_exptl.entry_id    4K9U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4K9U 
_cell.length_a            77.53 
_cell.length_b            99.88 
_cell.length_c            130.16 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4K9U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N30 5AW . A 5AW 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 207 n n 
CHA C4D HEM doub 208 n n 
CHA HHA HEM sing 209 n n 
CHB C4A HEM sing 210 n n 
CHB C1B HEM doub 211 n n 
CHB HHB HEM sing 212 n n 
CHC C4B HEM sing 213 n n 
CHC C1C HEM doub 214 n n 
CHC HHC HEM sing 215 n n 
CHD C4C HEM doub 216 n n 
CHD C1D HEM sing 217 n n 
CHD HHD HEM sing 218 n n 
C1A C2A HEM doub 219 n y 
C1A NA HEM sing 220 n y 
C2A C3A HEM sing 221 n y 
C2A CAA HEM sing 222 n n 
C3A C4A HEM doub 223 n y 
C3A CMA HEM sing 224 n n 
C4A NA HEM sing 225 n y 
CMA HMA HEM sing 226 n n 
CMA HMAA HEM sing 227 n n 
CMA HMAB HEM sing 228 n n 
CAA CBA HEM sing 229 n n 
CAA HAA HEM sing 230 n n 
CAA HAAA HEM sing 231 n n 
CBA CGA HEM sing 232 n n 
CBA HBA HEM sing 233 n n 
CBA HBAA HEM sing 234 n n 
CGA O1A HEM doub 235 n n 
CGA O2A HEM sing 236 n n 
C1B C2B HEM sing 237 n n 
C1B NB HEM sing 238 n n 
C2B C3B HEM doub 239 n n 
C2B CMB HEM sing 240 n n 
C3B C4B HEM sing 241 n n 
C3B CAB HEM sing 242 n n 
C4B NB HEM doub 243 n n 
CMB HMB HEM sing 244 n n 
CMB HMBA HEM sing 245 n n 
CMB HMBB HEM sing 246 n n 
CAB CBB HEM doub 247 n n 
CAB HAB HEM sing 248 n n 
CBB HBB HEM sing 249 n n 
CBB HBBA HEM sing 250 n n 
C1C C2C HEM sing 251 n y 
C1C NC HEM sing 252 n y 
C2C C3C HEM doub 253 n y 
C2C CMC HEM sing 254 n n 
C3C C4C HEM sing 255 n y 
C3C CAC HEM sing 256 n n 
C4C NC HEM sing 257 n y 
CMC HMC HEM sing 258 n n 
CMC HMCA HEM sing 259 n n 
CMC HMCB HEM sing 260 n n 
CAC CBC HEM doub 261 n n 
CAC HAC HEM sing 262 n n 
CBC HBC HEM sing 263 n n 
CBC HBCA HEM sing 264 n n 
C1D C2D HEM sing 265 n n 
C1D ND HEM doub 266 n n 
C2D C3D HEM doub 267 n n 
C2D CMD HEM sing 268 n n 
C3D C4D HEM sing 269 n n 
C3D CAD HEM sing 270 n n 
C4D ND HEM sing 271 n n 
CMD HMD HEM sing 272 n n 
CMD HMDA HEM sing 273 n n 
CMD HMDB HEM sing 274 n n 
CAD CBD HEM sing 275 n n 
CAD HAD HEM sing 276 n n 
CAD HADA HEM sing 277 n n 
CBD CGD HEM sing 278 n n 
CBD HBD HEM sing 279 n n 
CBD HBDA HEM sing 280 n n 
CGD O1D HEM doub 281 n n 
CGD O2D HEM sing 282 n n 
O2A H2A HEM sing 283 n n 
O2D H2D HEM sing 284 n n 
FE NA HEM sing 285 n n 
FE NB HEM sing 286 n n 
FE NC HEM sing 287 n n 
FE ND HEM sing 288 n n 
#
_atom_sites.entry_id                     4K9U 
_atom_sites.fract_transf_matrix[1][1]    0.012898 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010012 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007683 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 5AW A 1 602 600 5AW 5AW . 
D 3 5AW A 1 603 700 5AW 5AW . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 15.152 30.43 10.093 1 56.5 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 15.967 27.624 14.162 1 52.56 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 16.331 23.735 11.306 1 59.13 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 15.518 26.563 7.243 1 60.67 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 15.35 29.895 11.428 1 55.01 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 15.158 30.822 12.571 1 55.22 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 15.387 29.996 13.756 1 53.28 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 15.703 28.664 13.207 1 52.35 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 15.301 30.411 15.196 1 51.58 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 14.807 32.285 12.517 1 54.78 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 13.354 32.537 12.863 1 61.24 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 13.208 34.028 12.84 1 63.45 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 14.196 34.7 12.462 1 67.09 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 12.116 34.523 13.181 1 65.77 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 16.129 26.272 13.702 1 56.83 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 16.528 25.262 14.698 1 57.54 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 16.65 24.092 13.826 1 56.96 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 16.321 24.599 12.476 1 56 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 16.735 25.462 16.182 1 56.86 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 17.026 22.717 14.219 1 56.46 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 16.508 22.195 15.311 1 54.15 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 16.015 24.179 9.952 1 58.7 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 15.752 23.203 8.857 1 59.94 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 15.543 24.073 7.684 1 59.91 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 15.684 25.455 8.156 1 60.15 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 15.708 21.697 8.954 1 61.4 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 15.196 23.695 6.298 1 60.12 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 15.663 22.581 5.785 1 61.06 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 15.323 27.925 7.707 1 60.43 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 15.184 29.029 6.707 1 62.88 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 15.091 30.198 7.559 1 63.13 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 15.157 29.587 8.921 1 60.19 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 15.173 28.995 5.209 1 63.46 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 14.889 31.628 7.133 1 66.03 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 13.375 31.726 6.864 1 69.22 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 12.958 32.972 6.094 1 74.91 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 13.675 34.012 6.223 1 73.22 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 11.916 32.899 5.366 1 71.26 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 15.827 28.555 11.755 1 52.67 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 16.05 25.91 12.394 1 55.47 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 16.119 25.578 9.546 1 59.38 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 15.346 28.258 9.013 1 57.18 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 15.426 26.97 10.68 1 57.91 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#