data_4K9U # _model_server_result.job_id tG3Kv4-Reu-q4hnzTOHbfg _model_server_result.datetime_utc '2024-12-03 11:45:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k9u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 4K9U # _exptl.entry_id 4K9U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 552.753 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-(methyl{[2-(propan-2-yl)-1,3-thiazol-4-yl]methyl}carbamoyl)-N-[(2S,5S)-5-{[(1,3-thiazol-5-ylmethoxy)carbonyl]amino}hexan-2-yl]-D-valinamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K9U _cell.length_a 77.53 _cell.length_b 99.88 _cell.length_c 130.16 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K9U _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N30 5AW . A 5AW 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? # _chem_comp.formula 'C25 H40 N6 O4 S2' _chem_comp.formula_weight 552.753 _chem_comp.id 5AW _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-(methyl{[2-(propan-2-yl)-1,3-thiazol-4-yl]methyl}carbamoyl)-N-[(2S,5S)-5-{[(1,3-thiazol-5-ylmethoxy)carbonyl]amino}hexan-2-yl]-D-valinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C34 C33 5AW sing 1 n n C02 C03 5AW sing 2 n n C02 C04 5AW sing 3 n n C02 C01 5AW sing 4 n n S37 C04 5AW sing 5 n y S37 C36 5AW sing 6 n y O15 C14 5AW doub 7 n n C04 N05 5AW doub 8 n y C36 C06 5AW doub 9 n y C33 C13 5AW sing 10 n n C33 C35 5AW sing 11 n n O11 C10 5AW doub 12 n n C13 C14 5AW sing 13 n n C13 N12 5AW sing 14 n n C14 N16 5AW sing 15 n n N05 C06 5AW sing 16 n y C06 C07 5AW sing 17 n n C10 N12 5AW sing 18 n n C10 N08 5AW sing 19 n n C18 C17 5AW sing 20 n n C31 S32 5AW sing 21 n y C31 N30 5AW doub 22 n y N08 C07 5AW sing 23 n n N08 C09 5AW sing 24 n n N16 C17 5AW sing 25 n n S32 C28 5AW sing 26 n y C17 C19 5AW sing 27 n n C19 C20 5AW sing 28 n n C20 C21 5AW sing 29 n n O25 C24 5AW doub 30 n n N30 C29 5AW sing 31 n y N23 C24 5AW sing 32 n n N23 C21 5AW sing 33 n n C24 O26 5AW sing 34 n n C28 C29 5AW doub 35 n y C28 C27 5AW sing 36 n n C21 C22 5AW sing 37 n n O26 C27 5AW sing 38 n n C27 H1 5AW sing 39 n n C27 H2 5AW sing 40 n n C31 H3 5AW sing 41 n n C29 H4 5AW sing 42 n n N23 H5 5AW sing 43 n n C21 H6 5AW sing 44 n n C22 H7 5AW sing 45 n n C22 H8 5AW sing 46 n n C22 H9 5AW sing 47 n n C20 H10 5AW sing 48 n n C20 H11 5AW sing 49 n n C19 H12 5AW sing 50 n n C19 H13 5AW sing 51 n n C17 H14 5AW sing 52 n n C18 H15 5AW sing 53 n n C18 H16 5AW sing 54 n n C18 H17 5AW sing 55 n n N16 H18 5AW sing 56 n n C13 H19 5AW sing 57 n n C33 H20 5AW sing 58 n n C35 H21 5AW sing 59 n n C35 H22 5AW sing 60 n n C35 H23 5AW sing 61 n n C34 H24 5AW sing 62 n n C34 H25 5AW sing 63 n n C34 H26 5AW sing 64 n n N12 H27 5AW sing 65 n n C09 H28 5AW sing 66 n n C09 H29 5AW sing 67 n n C09 H30 5AW sing 68 n n C07 H31 5AW sing 69 n n C07 H32 5AW sing 70 n n C36 H33 5AW sing 71 n n C02 H34 5AW sing 72 n n C03 H35 5AW sing 73 n n C03 H36 5AW sing 74 n n C03 H37 5AW sing 75 n n C01 H38 5AW sing 76 n n C01 H39 5AW sing 77 n n C01 H40 5AW sing 78 n n # _atom_sites.entry_id 4K9U _atom_sites.fract_transf_matrix[1][1] 0.012898 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007683 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 5AW A 1 602 600 5AW 5AW . D 3 5AW A 1 603 700 5AW 5AW . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O25 5AW . . . D 3 22.704 32.677 6.012 1 143.89 ? O25 5AW 603 A 1 HETATM 2 C C24 5AW . . . D 3 22.839 31.829 6.885 1 143.86 ? C24 5AW 603 A 1 HETATM 3 O O26 5AW . . . D 3 21.666 31.417 7.66 1 140.26 ? O26 5AW 603 A 1 HETATM 4 C C27 5AW . . . D 3 20.462 32.199 7.652 1 135.5 ? C27 5AW 603 A 1 HETATM 5 C C28 5AW . . . D 3 20.059 32.654 9.042 1 134.51 ? C28 5AW 603 A 1 HETATM 6 S S32 5AW . . . D 3 18.736 31.829 9.787 1 130.12 ? S32 5AW 603 A 1 HETATM 7 C C31 5AW . . . D 3 18.784 32.756 11.255 1 124.96 ? C31 5AW 603 A 1 HETATM 8 N N30 5AW . . . D 3 19.799 33.662 11.115 1 130.68 ? N30 5AW 603 A 1 HETATM 9 C C29 5AW . . . D 3 20.507 33.631 9.93 1 132.62 ? C29 5AW 603 A 1 HETATM 10 N N23 5AW . . . D 3 24.029 31.281 7.166 1 143.57 ? N23 5AW 603 A 1 HETATM 11 C C21 5AW . . . D 3 24.646 30.165 6.449 1 145.4 ? C21 5AW 603 A 1 HETATM 12 C C22 5AW . . . D 3 24.653 30.359 4.936 1 143.59 ? C22 5AW 603 A 1 HETATM 13 C C20 5AW . . . D 3 26.084 29.967 6.924 1 148.61 ? C20 5AW 603 A 1 HETATM 14 C C19 5AW . . . D 3 26.167 29.014 8.12 1 158.33 ? C19 5AW 603 A 1 HETATM 15 C C17 5AW . . . D 3 27.589 28.496 8.37 1 172.48 ? C17 5AW 603 A 1 HETATM 16 C C18 5AW . . . D 3 28.011 27.661 7.171 1 167.79 ? C18 5AW 603 A 1 HETATM 17 N N16 5AW . . . D 3 27.775 27.681 9.58 1 186.3 ? N16 5AW 603 A 1 HETATM 18 C C14 5AW . . . D 3 27.71 28.053 10.877 1 197.35 ? C14 5AW 603 A 1 HETATM 19 O O15 5AW . . . D 3 26.799 28.742 11.308 1 194.39 ? O15 5AW 603 A 1 HETATM 20 C C13 5AW . . . D 3 28.766 27.598 11.879 1 209.36 ? C13 5AW 603 A 1 HETATM 21 C C33 5AW . . . D 3 29.519 26.3 11.509 1 208.63 ? C33 5AW 603 A 1 HETATM 22 C C35 5AW . . . D 3 30.462 25.836 12.619 1 206.14 ? C35 5AW 603 A 1 HETATM 23 C C34 5AW . . . D 3 28.609 25.131 11.143 1 195.18 ? C34 5AW 603 A 1 HETATM 24 N N12 5AW . . . D 3 29.703 28.684 12.183 1 232.61 ? N12 5AW 603 A 1 HETATM 25 C C10 5AW . . . D 3 30.079 29.08 13.413 1 246.02 ? C10 5AW 603 A 1 HETATM 26 O O11 5AW . . . D 3 29.462 28.738 14.423 1 230.61 ? O11 5AW 603 A 1 HETATM 27 N N08 5AW . . . D 3 31.166 29.872 13.514 1 263.22 ? N08 5AW 603 A 1 HETATM 28 C C09 5AW . . . D 3 31.259 31.18 12.781 1 262.08 ? C09 5AW 603 A 1 HETATM 29 C C07 5AW . . . D 3 32.302 29.452 14.369 1 274.15 ? C07 5AW 603 A 1 HETATM 30 C C06 5AW . . . D 3 33.51 30.371 14.371 1 280.04 ? C06 5AW 603 A 1 HETATM 31 N N05 5AW . . . D 3 33.459 31.688 14.776 1 282.15 ? N05 5AW 603 A 1 HETATM 32 C C36 5AW . . . D 3 34.784 29.929 13.972 1 275.47 ? C36 5AW 603 A 1 HETATM 33 S S37 5AW . . . D 3 35.86 31.272 14.138 1 271.46 ? S37 5AW 603 A 1 HETATM 34 C C04 5AW . . . D 3 34.639 32.353 14.716 1 278.45 ? C04 5AW 603 A 1 HETATM 35 C C02 5AW . . . D 3 35.051 33.746 15.03 1 271.47 ? C02 5AW 603 A 1 HETATM 36 C C03 5AW . . . D 3 34.38 34.712 14.057 1 260.19 ? C03 5AW 603 A 1 HETATM 37 C C01 5AW . . . D 3 34.683 34.102 16.47 1 266.08 ? C01 5AW 603 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #