data_4K9V
#
_model_server_result.job_id            ovMoE-sPYGeMbsGnBxmQQg 
_model_server_result.datetime_utc      '2024-11-28 07:08:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4k9v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    4K9V 
#
_exptl.entry_id    4K9V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4K9V 
_cell.length_a            77.62 
_cell.length_b            100.55 
_cell.length_c            130.04 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4K9V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N36 6AW . A 6AW 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 208 n n 
CHA C4D HEM doub 209 n n 
CHA HHA HEM sing 210 n n 
CHB C4A HEM sing 211 n n 
CHB C1B HEM doub 212 n n 
CHB HHB HEM sing 213 n n 
CHC C4B HEM sing 214 n n 
CHC C1C HEM doub 215 n n 
CHC HHC HEM sing 216 n n 
CHD C4C HEM doub 217 n n 
CHD C1D HEM sing 218 n n 
CHD HHD HEM sing 219 n n 
C1A C2A HEM doub 220 n y 
C1A NA HEM sing 221 n y 
C2A C3A HEM sing 222 n y 
C2A CAA HEM sing 223 n n 
C3A C4A HEM doub 224 n y 
C3A CMA HEM sing 225 n n 
C4A NA HEM sing 226 n y 
CMA HMA HEM sing 227 n n 
CMA HMAA HEM sing 228 n n 
CMA HMAB HEM sing 229 n n 
CAA CBA HEM sing 230 n n 
CAA HAA HEM sing 231 n n 
CAA HAAA HEM sing 232 n n 
CBA CGA HEM sing 233 n n 
CBA HBA HEM sing 234 n n 
CBA HBAA HEM sing 235 n n 
CGA O1A HEM doub 236 n n 
CGA O2A HEM sing 237 n n 
C1B C2B HEM sing 238 n n 
C1B NB HEM sing 239 n n 
C2B C3B HEM doub 240 n n 
C2B CMB HEM sing 241 n n 
C3B C4B HEM sing 242 n n 
C3B CAB HEM sing 243 n n 
C4B NB HEM doub 244 n n 
CMB HMB HEM sing 245 n n 
CMB HMBA HEM sing 246 n n 
CMB HMBB HEM sing 247 n n 
CAB CBB HEM doub 248 n n 
CAB HAB HEM sing 249 n n 
CBB HBB HEM sing 250 n n 
CBB HBBA HEM sing 251 n n 
C1C C2C HEM sing 252 n y 
C1C NC HEM sing 253 n y 
C2C C3C HEM doub 254 n y 
C2C CMC HEM sing 255 n n 
C3C C4C HEM sing 256 n y 
C3C CAC HEM sing 257 n n 
C4C NC HEM sing 258 n y 
CMC HMC HEM sing 259 n n 
CMC HMCA HEM sing 260 n n 
CMC HMCB HEM sing 261 n n 
CAC CBC HEM doub 262 n n 
CAC HAC HEM sing 263 n n 
CBC HBC HEM sing 264 n n 
CBC HBCA HEM sing 265 n n 
C1D C2D HEM sing 266 n n 
C1D ND HEM doub 267 n n 
C2D C3D HEM doub 268 n n 
C2D CMD HEM sing 269 n n 
C3D C4D HEM sing 270 n n 
C3D CAD HEM sing 271 n n 
C4D ND HEM sing 272 n n 
CMD HMD HEM sing 273 n n 
CMD HMDA HEM sing 274 n n 
CMD HMDB HEM sing 275 n n 
CAD CBD HEM sing 276 n n 
CAD HAD HEM sing 277 n n 
CAD HADA HEM sing 278 n n 
CBD CGD HEM sing 279 n n 
CBD HBD HEM sing 280 n n 
CBD HBDA HEM sing 281 n n 
CGD O1D HEM doub 282 n n 
CGD O2D HEM sing 283 n n 
O2A H2A HEM sing 284 n n 
O2D H2D HEM sing 285 n n 
FE NA HEM sing 286 n n 
FE NB HEM sing 287 n n 
FE NC HEM sing 288 n n 
FE ND HEM sing 289 n n 
#
_atom_sites.entry_id                     4K9V 
_atom_sites.fract_transf_matrix[1][1]    0.012883 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009945 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00769 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 6AW A 1 602 600 6AW 6AW . 
D 4 HOH A 1 901 901 HOH HOH . 
D 4 HOH A 2 902 902 HOH HOH . 
D 4 HOH A 3 903 903 HOH HOH . 
D 4 HOH A 4 904 904 HOH HOH . 
D 4 HOH A 5 905 905 HOH HOH . 
D 4 HOH A 6 906 906 HOH HOH . 
D 4 HOH A 7 907 907 HOH HOH . 
D 4 HOH A 8 908 908 HOH HOH . 
D 4 HOH A 9 909 909 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 23.581 30.618 -9.926 1 42.52 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 22.908 27.667 -13.943 1 39.86 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 22.177 23.859 -11 1 44.01 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 23.401 26.716 -7.043 1 45.19 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 23.383 30.104 -11.264 1 41.84 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 23.464 31.024 -12.443 1 42.29 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 23.27 30.141 -13.594 1 42.43 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 23.104 28.781 -13.036 1 40.58 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 23.265 30.538 -15.043 1 45.78 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 23.693 32.519 -12.468 1 44.41 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 25.186 32.813 -12.377 1 50.81 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 25.528 34.218 -12.812 1 50.4 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 26.534 34.352 -13.534 1 51.04 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 24.822 35.173 -12.415 1 49.33 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 22.631 26.312 -13.471 1 42.34 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 22.201 25.282 -14.455 1 44.42 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 21.995 24.165 -13.541 1 44.13 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 22.334 24.692 -12.205 1 43.44 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 22.054 25.427 -15.963 1 40.92 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 21.518 22.794 -13.816 1 45.59 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 21.9 22.112 -14.865 1 49.34 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 22.571 24.309 -9.667 1 44.09 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 22.813 23.343 -8.569 1 44 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 23.166 24.22 -7.446 1 45.31 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 23.109 25.605 -7.93 1 43.87 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 22.755 21.838 -8.609 1 45.91 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 23.552 23.825 -6.062 1 45.29 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 22.999 22.764 -5.526 1 46.23 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 23.552 28.075 -7.538 1 46.13 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 23.71 29.144 -6.542 1 47.59 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 23.76 30.332 -7.404 1 46.69 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 23.645 29.75 -8.765 1 44.67 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 23.768 28.969 -5.056 1 47.37 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 23.95 31.774 -7.05 1 46.2 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 25.461 31.889 -6.839 1 47.71 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 25.861 33.167 -6.107 1 50.24 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 25.096 34.15 -6.11 1 52.45 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 26.958 33.23 -5.532 1 50.04 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 23.041 28.717 -11.57 1 41.13 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 22.687 25.982 -12.167 1 41.23 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 22.609 25.728 -9.288 1 44.09 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 23.479 28.427 -8.845 1 43.28 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 23.325 27.092 -10.471 1 43.18 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           43 
#