data_4K9W
#
_model_server_result.job_id            CEfHgacwYbF2OO8tHbRL1Q 
_model_server_result.datetime_utc      '2025-08-01 10:05:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4k9w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":601}' 
#
_entry.id    4K9W 
#
_exptl.entry_id    4K9W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4K9W 
_cell.length_a            94.02 
_cell.length_b            94.02 
_cell.length_c            199.412 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4K9W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 E FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc2 E FE HEM . A HEM 601 1_555 F N43 7AW . A 7AW 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc3 B SG CYS 422 B CYS 442 1_555 G FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc4 G FE HEM . B HEM 601 1_555 H N43 7AW . B 7AW 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc5 C SG CYS 422 C CYS 442 1_555 I FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc6 I FE HEM . C HEM 601 1_555 J N43 7AW . C 7AW 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc7 D SG CYS 422 D CYS 442 1_555 K FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc8 K FE HEM . D HEM 601 1_555 L N43 7AW . D 7AW 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 224 n n 
CHA C4D HEM doub 225 n n 
CHA HHA HEM sing 226 n n 
CHB C4A HEM sing 227 n n 
CHB C1B HEM doub 228 n n 
CHB HHB HEM sing 229 n n 
CHC C4B HEM sing 230 n n 
CHC C1C HEM doub 231 n n 
CHC HHC HEM sing 232 n n 
CHD C4C HEM doub 233 n n 
CHD C1D HEM sing 234 n n 
CHD HHD HEM sing 235 n n 
C1A C2A HEM doub 236 n y 
C1A NA HEM sing 237 n y 
C2A C3A HEM sing 238 n y 
C2A CAA HEM sing 239 n n 
C3A C4A HEM doub 240 n y 
C3A CMA HEM sing 241 n n 
C4A NA HEM sing 242 n y 
CMA HMA HEM sing 243 n n 
CMA HMAA HEM sing 244 n n 
CMA HMAB HEM sing 245 n n 
CAA CBA HEM sing 246 n n 
CAA HAA HEM sing 247 n n 
CAA HAAA HEM sing 248 n n 
CBA CGA HEM sing 249 n n 
CBA HBA HEM sing 250 n n 
CBA HBAA HEM sing 251 n n 
CGA O1A HEM doub 252 n n 
CGA O2A HEM sing 253 n n 
C1B C2B HEM sing 254 n n 
C1B NB HEM sing 255 n n 
C2B C3B HEM doub 256 n n 
C2B CMB HEM sing 257 n n 
C3B C4B HEM sing 258 n n 
C3B CAB HEM sing 259 n n 
C4B NB HEM doub 260 n n 
CMB HMB HEM sing 261 n n 
CMB HMBA HEM sing 262 n n 
CMB HMBB HEM sing 263 n n 
CAB CBB HEM doub 264 n n 
CAB HAB HEM sing 265 n n 
CBB HBB HEM sing 266 n n 
CBB HBBA HEM sing 267 n n 
C1C C2C HEM sing 268 n y 
C1C NC HEM sing 269 n y 
C2C C3C HEM doub 270 n y 
C2C CMC HEM sing 271 n n 
C3C C4C HEM sing 272 n y 
C3C CAC HEM sing 273 n n 
C4C NC HEM sing 274 n y 
CMC HMC HEM sing 275 n n 
CMC HMCA HEM sing 276 n n 
CMC HMCB HEM sing 277 n n 
CAC CBC HEM doub 278 n n 
CAC HAC HEM sing 279 n n 
CBC HBC HEM sing 280 n n 
CBC HBCA HEM sing 281 n n 
C1D C2D HEM sing 282 n n 
C1D ND HEM doub 283 n n 
C2D C3D HEM doub 284 n n 
C2D CMD HEM sing 285 n n 
C3D C4D HEM sing 286 n n 
C3D CAD HEM sing 287 n n 
C4D ND HEM sing 288 n n 
CMD HMD HEM sing 289 n n 
CMD HMDA HEM sing 290 n n 
CMD HMDB HEM sing 291 n n 
CAD CBD HEM sing 292 n n 
CAD HAD HEM sing 293 n n 
CAD HADA HEM sing 294 n n 
CBD CGD HEM sing 295 n n 
CBD HBD HEM sing 296 n n 
CBD HBDA HEM sing 297 n n 
CGD O1D HEM doub 298 n n 
CGD O2D HEM sing 299 n n 
O2A H2A HEM sing 300 n n 
O2D H2D HEM sing 301 n n 
FE NA HEM sing 302 n n 
FE NB HEM sing 303 n n 
FE NC HEM sing 304 n n 
FE ND HEM sing 305 n n 
#
_atom_sites.entry_id                     4K9W 
_atom_sites.fract_transf_matrix[1][1]    0.010636 
_atom_sites.fract_transf_matrix[1][2]    0.006141 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012281 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005015 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 601 500 HEM HEM . 
F 3 7AW A 1 602 600 7AW 7AW . 
G 2 HEM B 1 601 500 HEM HEM . 
H 3 7AW B 1 602 600 7AW 7AW . 
I 2 HEM C 1 601 500 HEM HEM . 
J 3 7AW C 1 602 600 7AW 7AW . 
K 2 HEM D 1 601 500 HEM HEM . 
L 3 7AW D 1 602 600 7AW 7AW . 
M 4 HOH A 1 701 10 HOH HOH . 
M 4 HOH A 2 702 12 HOH HOH . 
M 4 HOH A 3 703 14 HOH HOH . 
M 4 HOH A 4 704 16 HOH HOH . 
N 4 HOH B 1 701 1 HOH HOH . 
N 4 HOH B 2 702 2 HOH HOH . 
N 4 HOH B 3 703 8 HOH HOH . 
N 4 HOH B 4 704 15 HOH HOH . 
N 4 HOH B 5 705 17 HOH HOH . 
N 4 HOH B 6 706 18 HOH HOH . 
N 4 HOH B 7 707 19 HOH HOH . 
O 4 HOH C 1 701 5 HOH HOH . 
O 4 HOH C 2 702 6 HOH HOH . 
O 4 HOH C 3 703 7 HOH HOH . 
O 4 HOH C 4 704 11 HOH HOH . 
O 4 HOH C 5 705 20 HOH HOH . 
O 4 HOH C 6 706 21 HOH HOH . 
O 4 HOH C 7 707 22 HOH HOH . 
P 4 HOH D 1 701 3 HOH HOH . 
P 4 HOH D 2 702 4 HOH HOH . 
P 4 HOH D 3 703 9 HOH HOH . 
P 4 HOH D 4 704 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . G 2 72.405 -50.479 34.905 1 46.74 ? CHA HEM 601 B 1 
HETATM 2 C CHB HEM . . . G 2 73.328 -47.769 30.747 1 45.56 ? CHB HEM 601 B 1 
HETATM 3 C CHC HEM . . . G 2 76.204 -44.82 33.293 1 41.86 ? CHC HEM 601 B 1 
HETATM 4 C CHD HEM . . . G 2 74.797 -47.163 37.519 1 48.31 ? CHD HEM 601 B 1 
HETATM 5 C C1A HEM . . . G 2 72.496 -49.987 33.535 1 44.05 ? C1A HEM 601 B 1 
HETATM 6 C C2A HEM . . . G 2 71.816 -50.712 32.432 1 44.41 ? C2A HEM 601 B 1 
HETATM 7 C C3A HEM . . . G 2 72.088 -49.937 31.217 1 43.75 ? C3A HEM 601 B 1 
HETATM 8 C C4A HEM . . . G 2 72.906 -48.791 31.692 1 43.58 ? C4A HEM 601 B 1 
HETATM 9 C CMA HEM . . . G 2 71.62 -50.253 29.822 1 39.26 ? CMA HEM 601 B 1 
HETATM 10 C CAA HEM . . . G 2 71.007 -51.977 32.517 1 47.06 ? CAA HEM 601 B 1 
HETATM 11 C CBA HEM . . . G 2 69.591 -51.594 32.914 1 49 ? CBA HEM 601 B 1 
HETATM 12 C CGA HEM . . . G 2 68.67 -52.772 32.765 1 49.66 ? CGA HEM 601 B 1 
HETATM 13 O O1A HEM . . . G 2 69.168 -53.922 32.683 1 50.86 ? O1A HEM 601 B 1 
HETATM 14 O O2A HEM . . . G 2 67.446 -52.546 32.733 1 48.86 ? O2A HEM 601 B 1 
HETATM 15 C C1B HEM . . . G 2 74.229 -46.702 31.098 1 43.09 ? C1B HEM 601 B 1 
HETATM 16 C C2B HEM . . . G 2 74.833 -45.897 30.013 1 43.04 ? C2B HEM 601 B 1 
HETATM 17 C C3B HEM . . . G 2 75.696 -45.01 30.797 1 40.77 ? C3B HEM 601 B 1 
HETATM 18 C C4B HEM . . . G 2 75.48 -45.447 32.194 1 42.6 ? C4B HEM 601 B 1 
HETATM 19 C CMB HEM . . . G 2 74.56 -46.014 28.533 1 42.72 ? CMB HEM 601 B 1 
HETATM 20 C CAB HEM . . . G 2 76.614 -43.927 30.338 1 41.85 ? CAB HEM 601 B 1 
HETATM 21 C CBB HEM . . . G 2 76.243 -42.995 29.477 1 36.17 ? CBB HEM 601 B 1 
HETATM 22 C C1C HEM . . . G 2 75.937 -45.165 34.677 1 43.23 ? C1C HEM 601 B 1 
HETATM 23 C C2C HEM . . . G 2 76.289 -44.203 35.738 1 43.86 ? C2C HEM 601 B 1 
HETATM 24 C C3C HEM . . . G 2 75.87 -44.92 36.949 1 47.21 ? C3C HEM 601 B 1 
HETATM 25 C C4C HEM . . . G 2 75.311 -46.22 36.534 1 45.3 ? C4C HEM 601 B 1 
HETATM 26 C CMC HEM . . . G 2 76.904 -42.836 35.595 1 45.19 ? CMC HEM 601 B 1 
HETATM 27 C CAC HEM . . . G 2 75.953 -44.423 38.348 1 47.87 ? CAC HEM 601 B 1 
HETATM 28 C CBC HEM . . . G 2 77.147 -44.273 38.88 1 47.49 ? CBC HEM 601 B 1 
HETATM 29 C C1D HEM . . . G 2 74.007 -48.332 37.156 1 47.58 ? C1D HEM 601 B 1 
HETATM 30 C C2D HEM . . . G 2 73.676 -49.338 38.182 1 48.22 ? C2D HEM 601 B 1 
HETATM 31 C C3D HEM . . . G 2 72.96 -50.338 37.391 1 45.29 ? C3D HEM 601 B 1 
HETATM 32 C C4D HEM . . . G 2 72.973 -49.76 36.036 1 45.89 ? C4D HEM 601 B 1 
HETATM 33 C CMD HEM . . . G 2 73.986 -49.33 39.654 1 46.49 ? CMD HEM 601 B 1 
HETATM 34 C CAD HEM . . . G 2 72.31 -51.594 37.886 1 48.14 ? CAD HEM 601 B 1 
HETATM 35 C CBD HEM . . . G 2 71.03 -51.076 38.557 1 45.39 ? CBD HEM 601 B 1 
HETATM 36 C CGD HEM . . . G 2 70.226 -52.159 39.255 1 47.99 ? CGD HEM 601 B 1 
HETATM 37 O O1D HEM . . . G 2 69.197 -51.817 39.896 1 49.26 ? O1D HEM 601 B 1 
HETATM 38 O O2D HEM . . . G 2 70.61 -53.351 39.192 1 45.96 ? O2D HEM 601 B 1 
HETATM 39 N NA HEM . . . G 2 73.282 -48.838 33.101 1 43.17 ? NA HEM 601 B 1 
HETATM 40 N NB HEM . . . G 2 74.619 -46.493 32.368 1 42.16 ? NB HEM 601 B 1 
HETATM 41 N NC HEM . . . G 2 75.433 -46.488 35.108 1 45.93 ? NC HEM 601 B 1 
HETATM 42 N ND HEM . . . G 2 73.634 -48.594 35.876 1 46.52 ? ND HEM 601 B 1 
HETATM 43 FE FE HEM . . . G 2 73.929 -47.321 34.197 1 45.41 ? FE HEM 601 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           43 
#