data_4K9X
#
_model_server_result.job_id            x-9AhKJr_POC84VVt1KwAA 
_model_server_result.datetime_utc      '2024-12-01 00:01:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4k9x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    4K9X 
#
_exptl.entry_id    4K9X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4K9X 
_cell.length_a            77.27 
_cell.length_b            100.33 
_cell.length_c            126.97 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4K9X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N26 8AW . A 8AW 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 201 n n 
CHA C4D HEM doub 202 n n 
CHA HHA HEM sing 203 n n 
CHB C4A HEM sing 204 n n 
CHB C1B HEM doub 205 n n 
CHB HHB HEM sing 206 n n 
CHC C4B HEM sing 207 n n 
CHC C1C HEM doub 208 n n 
CHC HHC HEM sing 209 n n 
CHD C4C HEM doub 210 n n 
CHD C1D HEM sing 211 n n 
CHD HHD HEM sing 212 n n 
C1A C2A HEM doub 213 n y 
C1A NA HEM sing 214 n y 
C2A C3A HEM sing 215 n y 
C2A CAA HEM sing 216 n n 
C3A C4A HEM doub 217 n y 
C3A CMA HEM sing 218 n n 
C4A NA HEM sing 219 n y 
CMA HMA HEM sing 220 n n 
CMA HMAA HEM sing 221 n n 
CMA HMAB HEM sing 222 n n 
CAA CBA HEM sing 223 n n 
CAA HAA HEM sing 224 n n 
CAA HAAA HEM sing 225 n n 
CBA CGA HEM sing 226 n n 
CBA HBA HEM sing 227 n n 
CBA HBAA HEM sing 228 n n 
CGA O1A HEM doub 229 n n 
CGA O2A HEM sing 230 n n 
C1B C2B HEM sing 231 n n 
C1B NB HEM sing 232 n n 
C2B C3B HEM doub 233 n n 
C2B CMB HEM sing 234 n n 
C3B C4B HEM sing 235 n n 
C3B CAB HEM sing 236 n n 
C4B NB HEM doub 237 n n 
CMB HMB HEM sing 238 n n 
CMB HMBA HEM sing 239 n n 
CMB HMBB HEM sing 240 n n 
CAB CBB HEM doub 241 n n 
CAB HAB HEM sing 242 n n 
CBB HBB HEM sing 243 n n 
CBB HBBA HEM sing 244 n n 
C1C C2C HEM sing 245 n y 
C1C NC HEM sing 246 n y 
C2C C3C HEM doub 247 n y 
C2C CMC HEM sing 248 n n 
C3C C4C HEM sing 249 n y 
C3C CAC HEM sing 250 n n 
C4C NC HEM sing 251 n y 
CMC HMC HEM sing 252 n n 
CMC HMCA HEM sing 253 n n 
CMC HMCB HEM sing 254 n n 
CAC CBC HEM doub 255 n n 
CAC HAC HEM sing 256 n n 
CBC HBC HEM sing 257 n n 
CBC HBCA HEM sing 258 n n 
C1D C2D HEM sing 259 n n 
C1D ND HEM doub 260 n n 
C2D C3D HEM doub 261 n n 
C2D CMD HEM sing 262 n n 
C3D C4D HEM sing 263 n n 
C3D CAD HEM sing 264 n n 
C4D ND HEM sing 265 n n 
CMD HMD HEM sing 266 n n 
CMD HMDA HEM sing 267 n n 
CMD HMDB HEM sing 268 n n 
CAD CBD HEM sing 269 n n 
CAD HAD HEM sing 270 n n 
CAD HADA HEM sing 271 n n 
CBD CGD HEM sing 272 n n 
CBD HBD HEM sing 273 n n 
CBD HBDA HEM sing 274 n n 
CGD O1D HEM doub 275 n n 
CGD O2D HEM sing 276 n n 
O2A H2A HEM sing 277 n n 
O2D H2D HEM sing 278 n n 
FE NA HEM sing 279 n n 
FE NB HEM sing 280 n n 
FE NC HEM sing 281 n n 
FE ND HEM sing 282 n n 
#
_atom_sites.entry_id                     4K9X 
_atom_sites.fract_transf_matrix[1][1]    0.012942 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009967 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007876 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 8AW A 1 602 600 8AW 8AW . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 23.53 19.776 9.29 1 55 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 22.753 22.634 13.326 1 54.28 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 22.297 26.47 10.386 1 55.01 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 23.238 23.592 6.395 1 56.33 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 23.326 20.306 10.616 1 55.39 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 23.466 19.372 11.743 1 53.59 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 23.242 20.189 12.925 1 52.7 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 22.988 21.551 12.399 1 53.51 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 23.307 19.739 14.342 1 51.63 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 23.787 17.919 11.642 1 52.75 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 25.287 17.723 11.74 1 56.96 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 25.385 16.263 12.094 1 57.69 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 26.536 15.904 12.419 1 56.99 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 24.381 15.507 12.036 1 55.5 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 22.573 23.991 12.854 1 55.73 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 22.169 25.028 13.818 1 55.86 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 22.009 26.17 12.924 1 55.84 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 22.349 25.638 11.588 1 55.05 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 21.973 24.872 15.305 1 57.32 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 21.615 27.556 13.28 1 56.38 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 22.01 28.065 14.433 1 53.71 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 22.616 25.992 9.052 1 54.09 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 22.869 26.957 7.957 1 55.78 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 23.141 26.079 6.813 1 55.64 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 23.033 24.701 7.297 1 55.16 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 22.877 28.463 8.023 1 56.47 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 23.5 26.485 5.449 1 54.68 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 22.791 27.44 4.906 1 55.8 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 23.392 22.225 6.884 1 56.46 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 23.522 21.11 5.905 1 58.63 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 23.603 19.958 6.796 1 57.36 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 23.549 20.603 8.124 1 54.48 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 23.554 21.155 4.396 1 60.04 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 23.797 18.498 6.481 1 56.75 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 25.32 18.323 6.407 1 57.44 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 25.749 17.14 5.558 1 62.21 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 25.142 16.038 5.702 1 60.18 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 26.703 17.305 4.743 1 61.28 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 22.895 21.656 10.949 1 53.64 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 22.643 24.319 11.544 1 55.07 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 22.56 24.583 8.673 1 54.61 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 23.364 21.908 8.193 1 53.37 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 23.28 23.216 9.845 1 55.15 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           43 
#