data_4K9X # _model_server_result.job_id daHU0kR3mX8AjEjxYekfqQ _model_server_result.datetime_utc '2024-12-01 00:11:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4k9x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 4K9X # _exptl.entry_id 4K9X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 493.661 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,3-thiazol-5-ylmethyl [(2R,5R)-5-{[(2S)-2-methylbutanoyl]amino}-1,6-diphenylhexan-2-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4K9X _cell.length_a 77.27 _cell.length_b 100.33 _cell.length_c 126.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4K9X _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N26 8AW . A 8AW 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? # _chem_comp.formula 'C28 H35 N3 O3 S' _chem_comp.formula_weight 493.661 _chem_comp.id 8AW _chem_comp.mon_nstd_flag . _chem_comp.name '1,3-thiazol-5-ylmethyl [(2R,5R)-5-{[(2S)-2-methylbutanoyl]amino}-1,6-diphenylhexan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C16 8AW doub 1 n y C15 C14 8AW sing 2 n y C16 C17 8AW sing 3 n y C14 C13 8AW doub 4 n y C17 C18 8AW doub 5 n y C13 C18 8AW sing 6 n y C13 C12 8AW sing 7 n n O21 C20 8AW doub 8 n n C23 O22 8AW sing 9 n n C23 C24 8AW sing 10 n n C12 C11 8AW sing 11 n n C20 O22 8AW sing 12 n n C20 N19 8AW sing 13 n n C24 C25 8AW doub 14 n y C24 S28 8AW sing 15 n y N19 C11 8AW sing 16 n n C25 N26 8AW sing 17 n y C11 C10 8AW sing 18 n n C32 C31 8AW doub 19 n y C32 C33 8AW sing 20 n y C10 C09 8AW sing 21 n n C31 C30 8AW sing 22 n y O06 C05 8AW doub 23 n n N26 C27 8AW doub 24 n y S28 C27 8AW sing 25 n y C04 C03 8AW sing 26 n n N07 C05 8AW sing 27 n n N07 C08 8AW sing 28 n n C05 C03 8AW sing 29 n n C33 C34 8AW doub 30 n y C09 C08 8AW sing 31 n n C30 C29 8AW sing 32 n n C30 C35 8AW doub 33 n y C03 C02 8AW sing 34 n n C29 C08 8AW sing 35 n n C02 C01 8AW sing 36 n n C34 C35 8AW sing 37 n y C03 H1 8AW sing 38 n n C02 H2 8AW sing 39 n n C02 H3 8AW sing 40 n n C01 H4 8AW sing 41 n n C01 H5 8AW sing 42 n n C01 H6 8AW sing 43 n n C04 H7 8AW sing 44 n n C04 H8 8AW sing 45 n n C04 H9 8AW sing 46 n n N07 H10 8AW sing 47 n n C08 H11 8AW sing 48 n n C29 H12 8AW sing 49 n n C29 H13 8AW sing 50 n n C31 H14 8AW sing 51 n n C32 H15 8AW sing 52 n n C33 H16 8AW sing 53 n n C34 H17 8AW sing 54 n n C35 H18 8AW sing 55 n n C09 H19 8AW sing 56 n n C09 H20 8AW sing 57 n n C10 H21 8AW sing 58 n n C10 H22 8AW sing 59 n n C11 H23 8AW sing 60 n n C12 H24 8AW sing 61 n n C12 H25 8AW sing 62 n n C14 H26 8AW sing 63 n n C15 H27 8AW sing 64 n n C16 H28 8AW sing 65 n n C17 H29 8AW sing 66 n n C18 H30 8AW sing 67 n n N19 H31 8AW sing 68 n n C23 H32 8AW sing 69 n n C23 H33 8AW sing 70 n n C25 H34 8AW sing 71 n n C27 H35 8AW sing 72 n n # _atom_sites.entry_id 4K9X _atom_sites.fract_transf_matrix[1][1] 0.012942 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007876 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 8AW A 1 602 600 8AW 8AW . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O06 8AW . . . C 3 15.716 12.65 9.65 1 133.63 ? O06 8AW 602 A 1 HETATM 2 C C05 8AW . . . C 3 14.919 13.427 10.165 1 133.17 ? C05 8AW 602 A 1 HETATM 3 C C03 8AW . . . C 3 13.68 12.885 10.843 1 133.52 ? C03 8AW 602 A 1 HETATM 4 C C02 8AW . . . C 3 13.912 11.448 11.316 1 127.85 ? C02 8AW 602 A 1 HETATM 5 C C01 8AW . . . C 3 14.754 11.404 12.575 1 120.67 ? C01 8AW 602 A 1 HETATM 6 C C04 8AW . . . C 3 12.467 12.96 9.909 1 130.36 ? C04 8AW 602 A 1 HETATM 7 N N07 8AW . . . C 3 15.073 14.766 10.126 1 131.35 ? N07 8AW 602 A 1 HETATM 8 C C08 8AW . . . C 3 15.93 15.626 10.962 1 127.42 ? C08 8AW 602 A 1 HETATM 9 C C29 8AW . . . C 3 17.437 15.222 10.925 1 116.05 ? C29 8AW 602 A 1 HETATM 10 C C30 8AW . . . C 3 18.457 16.338 10.688 1 102.8 ? C30 8AW 602 A 1 HETATM 11 C C31 8AW . . . C 3 19.031 16.519 9.417 1 96.89 ? C31 8AW 602 A 1 HETATM 12 C C32 8AW . . . C 3 19.963 17.528 9.175 1 87.45 ? C32 8AW 602 A 1 HETATM 13 C C33 8AW . . . C 3 20.326 18.371 10.218 1 88.89 ? C33 8AW 602 A 1 HETATM 14 C C34 8AW . . . C 3 19.759 18.197 11.483 1 93.9 ? C34 8AW 602 A 1 HETATM 15 C C35 8AW . . . C 3 18.836 17.181 11.732 1 95.37 ? C35 8AW 602 A 1 HETATM 16 C C09 8AW . . . C 3 15.628 17.104 10.615 1 122.37 ? C09 8AW 602 A 1 HETATM 17 C C10 8AW . . . C 3 16.14 17.517 9.23 1 111.22 ? C10 8AW 602 A 1 HETATM 18 C C11 8AW . . . C 3 15.29 18.559 8.529 1 106.54 ? C11 8AW 602 A 1 HETATM 19 C C12 8AW . . . C 3 14.879 17.998 7.165 1 109.78 ? C12 8AW 602 A 1 HETATM 20 C C13 8AW . . . C 3 14.297 19.059 6.262 1 115.88 ? C13 8AW 602 A 1 HETATM 21 C C14 8AW . . . C 3 14.857 19.257 5.002 1 115.62 ? C14 8AW 602 A 1 HETATM 22 C C15 8AW . . . C 3 14.336 20.233 4.147 1 118.76 ? C15 8AW 602 A 1 HETATM 23 C C16 8AW . . . C 3 13.262 21.017 4.56 1 123.18 ? C16 8AW 602 A 1 HETATM 24 C C17 8AW . . . C 3 12.695 20.82 5.824 1 127.59 ? C17 8AW 602 A 1 HETATM 25 C C18 8AW . . . C 3 13.21 19.839 6.677 1 122.37 ? C18 8AW 602 A 1 HETATM 26 N N19 8AW . . . C 3 16.042 19.807 8.44 1 101.12 ? N19 8AW 602 A 1 HETATM 27 C C20 8AW . . . C 3 17.087 20.097 7.646 1 90.9 ? C20 8AW 602 A 1 HETATM 28 O O21 8AW . . . C 3 17.678 19.32 6.912 1 88.55 ? O21 8AW 602 A 1 HETATM 29 O O22 8AW . . . C 3 17.529 21.477 7.686 1 84.56 ? O22 8AW 602 A 1 HETATM 30 C C23 8AW . . . C 3 18.775 21.865 7.141 1 70.89 ? C23 8AW 602 A 1 HETATM 31 C C24 8AW . . . C 3 19.64 22.267 8.29 1 60.37 ? C24 8AW 602 A 1 HETATM 32 C C25 8AW . . . C 3 20.995 22.465 8.476 1 55.29 ? C25 8AW 602 A 1 HETATM 33 N N26 8AW . . . C 3 21.347 22.836 9.724 1 49.86 ? N26 8AW 602 A 1 HETATM 34 C C27 8AW . . . C 3 20.284 22.926 10.565 1 55.27 ? C27 8AW 602 A 1 HETATM 35 S S28 8AW . . . C 3 18.796 22.549 9.732 1 56.94 ? S28 8AW 602 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #