data_4KAT # _model_server_result.job_id gjaa5mVSrjcUGK4BytSYiA _model_server_result.datetime_utc '2024-11-23 05:07:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":302}' # _entry.id 4KAT # _exptl.entry_id 4KAT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.566 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KAT _cell.length_a 53.68 _cell.length_b 115.74 _cell.length_c 140.46 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KAT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 I N N ? 3 K N N # _chem_comp.formula 'C27 H35 N9 O15 P2' _chem_comp.formula_weight 787.566 _chem_comp.id FDA _chem_comp.mon_nstd_flag . _chem_comp.name 'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FDA doub 117 n n PA O2A FDA sing 118 n n PA O5B FDA sing 119 n n PA O3P FDA sing 120 n n O2A HOA2 FDA sing 121 n n O5B C5B FDA sing 122 n n C5B C4B FDA sing 123 n n C5B H51A FDA sing 124 n n C5B H52A FDA sing 125 n n C4B O4B FDA sing 126 n n C4B C3B FDA sing 127 n n C4B H4B FDA sing 128 n n O4B C1B FDA sing 129 n n C3B O3B FDA sing 130 n n C3B C2B FDA sing 131 n n C3B H3B FDA sing 132 n n O3B HO3A FDA sing 133 n n C2B O2B FDA sing 134 n n C2B C1B FDA sing 135 n n C2B H2B FDA sing 136 n n O2B HO2A FDA sing 137 n n C1B N9A FDA sing 138 n n C1B H1B FDA sing 139 n n N9A C8A FDA sing 140 n y N9A C4A FDA sing 141 n y C8A N7A FDA doub 142 n y C8A H8A FDA sing 143 n n N7A C5A FDA sing 144 n y C5A C6A FDA sing 145 n y C5A C4A FDA doub 146 n y C6A N6A FDA sing 147 n n C6A N1A FDA doub 148 n y N6A H61A FDA sing 149 n n N6A H62A FDA sing 150 n n N1A C2A FDA sing 151 n y C2A N3A FDA doub 152 n y C2A H2A FDA sing 153 n n N3A C4A FDA sing 154 n y N1 C2 FDA sing 155 n n N1 C10 FDA sing 156 n n N1 HN1 FDA sing 157 n n C2 O2 FDA doub 158 n n C2 N3 FDA sing 159 n n N3 C4 FDA sing 160 n n N3 HN3 FDA sing 161 n n C4 O4 FDA doub 162 n n C4 C4X FDA sing 163 n n C4X N5 FDA sing 164 n n C4X C10 FDA doub 165 n n N5 C5X FDA sing 166 n n N5 HN5 FDA sing 167 n n C5X C6 FDA doub 168 n y C5X C9A FDA sing 169 n y C6 C7 FDA sing 170 n y C6 H6 FDA sing 171 n n C7 C7M FDA sing 172 n n C7 C8 FDA doub 173 n y C7M HM71 FDA sing 174 n n C7M HM72 FDA sing 175 n n C7M HM73 FDA sing 176 n n C8 C8M FDA sing 177 n n C8 C9 FDA sing 178 n y C8M HM81 FDA sing 179 n n C8M HM82 FDA sing 180 n n C8M HM83 FDA sing 181 n n C9 C9A FDA doub 182 n y C9 H9 FDA sing 183 n n C9A N10 FDA sing 184 n n N10 C10 FDA sing 185 n n N10 C1' FDA sing 186 n n C1' C2' FDA sing 187 n n C1' "H1'1" FDA sing 188 n n C1' "H1'2" FDA sing 189 n n C2' O2' FDA sing 190 n n C2' C3' FDA sing 191 n n C2' H2' FDA sing 192 n n O2' HO2' FDA sing 193 n n C3' O3' FDA sing 194 n n C3' C4' FDA sing 195 n n C3' H3' FDA sing 196 n n O3' HO3' FDA sing 197 n n C4' O4' FDA sing 198 n n C4' C5' FDA sing 199 n n C4' H4' FDA sing 200 n n O4' HO4' FDA sing 201 n n C5' O5' FDA sing 202 n n C5' "H5'1" FDA sing 203 n n C5' "H5'2" FDA sing 204 n n O5' P FDA sing 205 n n P O1P FDA doub 206 n n P O2P FDA sing 207 n n P O3P FDA sing 208 n n O2P HOP2 FDA sing 209 n n # _atom_sites.entry_id 4KAT _atom_sites.fract_transf_matrix[1][1] 0.018629 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 DU A 1 301 303 DU DDP . F 3 FDA A 1 302 315 FDA FDD . G 2 DU B 1 301 308 DU DDP . H 3 FDA B 1 302 310 FDA FDD . I 3 FDA C 1 301 305 FDA FDD . J 2 DU C 1 302 313 DU DDP . K 3 FDA D 1 301 300 FDA FDD . L 2 DU D 1 302 318 DU DDP . M 4 HOH A 1 401 5 HOH HOH . M 4 HOH A 2 402 12 HOH HOH . M 4 HOH A 3 403 18 HOH HOH . M 4 HOH A 4 404 19 HOH HOH . M 4 HOH A 5 405 20 HOH HOH . M 4 HOH A 6 406 24 HOH HOH . M 4 HOH A 7 407 26 HOH HOH . M 4 HOH A 8 408 29 HOH HOH . M 4 HOH A 9 409 30 HOH HOH . M 4 HOH A 10 410 37 HOH HOH . M 4 HOH A 11 411 39 HOH HOH . M 4 HOH A 12 412 49 HOH HOH . M 4 HOH A 13 413 53 HOH HOH . M 4 HOH A 14 414 59 HOH HOH . M 4 HOH A 15 415 63 HOH HOH . M 4 HOH A 16 416 67 HOH HOH . M 4 HOH A 17 417 68 HOH HOH . M 4 HOH A 18 418 71 HOH HOH . M 4 HOH A 19 419 76 HOH HOH . M 4 HOH A 20 420 77 HOH HOH . M 4 HOH A 21 421 79 HOH HOH . M 4 HOH A 22 422 81 HOH HOH . M 4 HOH A 23 423 82 HOH HOH . M 4 HOH A 24 424 85 HOH HOH . M 4 HOH A 25 425 89 HOH HOH . M 4 HOH A 26 426 93 HOH HOH . M 4 HOH A 27 427 95 HOH HOH . N 4 HOH B 1 401 8 HOH HOH . N 4 HOH B 2 402 17 HOH HOH . N 4 HOH B 3 403 21 HOH HOH . N 4 HOH B 4 404 23 HOH HOH . N 4 HOH B 5 405 31 HOH HOH . N 4 HOH B 6 406 33 HOH HOH . N 4 HOH B 7 407 34 HOH HOH . N 4 HOH B 8 408 36 HOH HOH . N 4 HOH B 9 409 41 HOH HOH . N 4 HOH B 10 410 45 HOH HOH . N 4 HOH B 11 411 46 HOH HOH . N 4 HOH B 12 412 51 HOH HOH . N 4 HOH B 13 413 52 HOH HOH . N 4 HOH B 14 414 55 HOH HOH . N 4 HOH B 15 415 62 HOH HOH . N 4 HOH B 16 416 83 HOH HOH . N 4 HOH B 17 417 88 HOH HOH . N 4 HOH B 18 418 96 HOH HOH . N 4 HOH B 19 419 98 HOH HOH . N 4 HOH B 20 420 100 HOH HOH . N 4 HOH B 21 421 102 HOH HOH . N 4 HOH B 22 422 103 HOH HOH . O 4 HOH C 1 401 7 HOH HOH . O 4 HOH C 2 402 2 HOH HOH . O 4 HOH C 3 403 4 HOH HOH . O 4 HOH C 4 404 9 HOH HOH . O 4 HOH C 5 405 10 HOH HOH . O 4 HOH C 6 406 11 HOH HOH . O 4 HOH C 7 407 13 HOH HOH . O 4 HOH C 8 408 14 HOH HOH . O 4 HOH C 9 409 15 HOH HOH . O 4 HOH C 10 410 16 HOH HOH . O 4 HOH C 11 411 22 HOH HOH . O 4 HOH C 12 412 25 HOH HOH . O 4 HOH C 13 413 27 HOH HOH . O 4 HOH C 14 414 35 HOH HOH . O 4 HOH C 15 415 42 HOH HOH . O 4 HOH C 16 416 43 HOH HOH . O 4 HOH C 17 417 56 HOH HOH . O 4 HOH C 18 418 57 HOH HOH . O 4 HOH C 19 419 60 HOH HOH . O 4 HOH C 20 420 61 HOH HOH . O 4 HOH C 21 421 64 HOH HOH . O 4 HOH C 22 422 65 HOH HOH . O 4 HOH C 23 423 69 HOH HOH . O 4 HOH C 24 424 70 HOH HOH . O 4 HOH C 25 425 78 HOH HOH . O 4 HOH C 26 426 80 HOH HOH . O 4 HOH C 27 427 87 HOH HOH . O 4 HOH C 28 428 90 HOH HOH . O 4 HOH C 29 429 91 HOH HOH . O 4 HOH C 30 430 92 HOH HOH . O 4 HOH C 31 431 94 HOH HOH . O 4 HOH C 32 432 97 HOH HOH . P 4 HOH D 1 401 1 HOH HOH . P 4 HOH D 2 402 3 HOH HOH . P 4 HOH D 3 403 6 HOH HOH . P 4 HOH D 4 404 28 HOH HOH . P 4 HOH D 5 405 32 HOH HOH . P 4 HOH D 6 406 38 HOH HOH . P 4 HOH D 7 407 40 HOH HOH . P 4 HOH D 8 408 44 HOH HOH . P 4 HOH D 9 409 47 HOH HOH . P 4 HOH D 10 410 48 HOH HOH . P 4 HOH D 11 411 50 HOH HOH . P 4 HOH D 12 412 54 HOH HOH . P 4 HOH D 13 413 58 HOH HOH . P 4 HOH D 14 414 66 HOH HOH . P 4 HOH D 15 415 72 HOH HOH . P 4 HOH D 16 416 73 HOH HOH . P 4 HOH D 17 417 74 HOH HOH . P 4 HOH D 18 418 75 HOH HOH . P 4 HOH D 19 419 84 HOH HOH . P 4 HOH D 20 420 86 HOH HOH . P 4 HOH D 21 421 99 HOH HOH . P 4 HOH D 22 422 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FDA . . . H 3 40.484 40.23 109.426 1 59.23 ? PA FDA 302 B 1 HETATM 2 O O1A FDA . . . H 3 40.224 41.672 108.838 1 47.72 ? O1A FDA 302 B 1 HETATM 3 O O2A FDA . . . H 3 39.494 39.123 109.241 1 39.96 ? O2A FDA 302 B 1 HETATM 4 O O5B FDA . . . H 3 40.812 40.432 110.987 1 60.99 ? O5B FDA 302 B 1 HETATM 5 C C5B FDA . . . H 3 41.923 41.305 111.284 1 67.92 ? C5B FDA 302 B 1 HETATM 6 C C4B FDA . . . H 3 42.335 41.354 112.752 1 71.28 ? C4B FDA 302 B 1 HETATM 7 O O4B FDA . . . H 3 41.169 41.394 113.582 1 76.41 ? O4B FDA 302 B 1 HETATM 8 C C3B FDA . . . H 3 43.169 40.153 113.185 1 77.62 ? C3B FDA 302 B 1 HETATM 9 O O3B FDA . . . H 3 44.476 40.61 113.568 1 86.03 ? O3B FDA 302 B 1 HETATM 10 C C2B FDA . . . H 3 42.433 39.535 114.373 1 78.82 ? C2B FDA 302 B 1 HETATM 11 O O2B FDA . . . H 3 43.178 39.757 115.575 1 77.21 ? O2B FDA 302 B 1 HETATM 12 C C1B FDA . . . H 3 41.128 40.303 114.521 1 65.18 ? C1B FDA 302 B 1 HETATM 13 N N9A FDA . . . H 3 39.842 39.575 114.338 1 57.05 ? N9A FDA 302 B 1 HETATM 14 C C8A FDA . . . H 3 38.889 39.97 113.462 1 48.45 ? C8A FDA 302 B 1 HETATM 15 N N7A FDA . . . H 3 37.797 39.187 113.543 1 46.58 ? N7A FDA 302 B 1 HETATM 16 C C5A FDA . . . H 3 38.022 38.247 114.493 1 50.98 ? C5A FDA 302 B 1 HETATM 17 C C6A FDA . . . H 3 37.289 37.156 115.031 1 53.32 ? C6A FDA 302 B 1 HETATM 18 N N6A FDA . . . H 3 36.025 36.843 114.596 1 53.22 ? N6A FDA 302 B 1 HETATM 19 N N1A FDA . . . H 3 37.849 36.425 116.036 1 42.7 ? N1A FDA 302 B 1 HETATM 20 C C2A FDA . . . H 3 39.093 36.724 116.516 1 49.86 ? C2A FDA 302 B 1 HETATM 21 N N3A FDA . . . H 3 39.853 37.737 116.051 1 51.05 ? N3A FDA 302 B 1 HETATM 22 C C4A FDA . . . H 3 39.378 38.523 115.036 1 53.57 ? C4A FDA 302 B 1 HETATM 23 N N1 FDA . . . H 3 42.318 30.862 104.981 1 72.32 ? N1 FDA 302 B 1 HETATM 24 C C2 FDA . . . H 3 41.786 29.696 104.862 1 64.01 ? C2 FDA 302 B 1 HETATM 25 O O2 FDA . . . H 3 40.696 29.495 105.331 1 48.94 ? O2 FDA 302 B 1 HETATM 26 N N3 FDA . . . H 3 42.378 28.663 104.222 1 72.22 ? N3 FDA 302 B 1 HETATM 27 C C4 FDA . . . H 3 43.592 28.726 103.66 1 67.28 ? C4 FDA 302 B 1 HETATM 28 O O4 FDA . . . H 3 44.051 27.748 103.122 1 71.37 ? O4 FDA 302 B 1 HETATM 29 C C4X FDA . . . H 3 44.353 30.014 103.729 1 67.5 ? C4X FDA 302 B 1 HETATM 30 N N5 FDA . . . H 3 45.66 30.224 103.166 1 72.21 ? N5 FDA 302 B 1 HETATM 31 C C5X FDA . . . H 3 46.249 31.543 103.314 1 70.86 ? C5X FDA 302 B 1 HETATM 32 C C6 FDA . . . H 3 47.643 31.801 102.721 1 65.98 ? C6 FDA 302 B 1 HETATM 33 C C7 FDA . . . H 3 48.211 33.201 102.896 1 63.59 ? C7 FDA 302 B 1 HETATM 34 C C7M FDA . . . H 3 49.587 33.537 102.342 1 61.4 ? C7M FDA 302 B 1 HETATM 35 C C8 FDA . . . H 3 47.385 34.244 103.628 1 68.99 ? C8 FDA 302 B 1 HETATM 36 C C8M FDA . . . H 3 47.926 35.625 103.801 1 64.29 ? C8M FDA 302 B 1 HETATM 37 C C9 FDA . . . H 3 46.158 33.984 104.146 1 69.23 ? C9 FDA 302 B 1 HETATM 38 C C9A FDA . . . H 3 45.489 32.656 104.039 1 69.35 ? C9A FDA 302 B 1 HETATM 39 N N10 FDA . . . H 3 44.321 32.465 104.563 1 67.97 ? N10 FDA 302 B 1 HETATM 40 C C10 FDA . . . H 3 43.655 31.161 104.439 1 69.37 ? C10 FDA 302 B 1 HETATM 41 C C1' FDA . . . H 3 43.581 33.55 105.21 1 60.94 ? C1' FDA 302 B 1 HETATM 42 C C2' FDA . . . H 3 43.608 33.63 106.737 1 64.26 ? C2' FDA 302 B 1 HETATM 43 O O2' FDA . . . H 3 43.214 32.382 107.338 1 66.04 ? O2' FDA 302 B 1 HETATM 44 C C3' FDA . . . H 3 42.647 34.733 107.219 1 61.17 ? C3' FDA 302 B 1 HETATM 45 O O3' FDA . . . H 3 41.285 34.355 107.016 1 59.84 ? O3' FDA 302 B 1 HETATM 46 C C4' FDA . . . H 3 42.788 36.045 106.482 1 61.79 ? C4' FDA 302 B 1 HETATM 47 O O4' FDA . . . H 3 44.172 36.366 106.508 1 71.66 ? O4' FDA 302 B 1 HETATM 48 C C5' FDA . . . H 3 42.033 37.149 107.193 1 61.92 ? C5' FDA 302 B 1 HETATM 49 O O5' FDA . . . H 3 43.001 37.659 108.102 1 64.22 ? O5' FDA 302 B 1 HETATM 50 P P FDA . . . H 3 42.625 38.343 109.519 1 63.53 ? P FDA 302 B 1 HETATM 51 O O1P FDA . . . H 3 41.582 37.465 110.187 1 65.41 ? O1P FDA 302 B 1 HETATM 52 O O2P FDA . . . H 3 43.94 38.701 110.214 1 63.35 ? O2P FDA 302 B 1 HETATM 53 O O3P FDA . . . H 3 41.949 39.714 108.994 1 57.58 ? O3P FDA 302 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #