data_4KAZ # _model_server_result.job_id UG3fT4ANZeXGm3r9qkeXRQ _model_server_result.datetime_utc '2024-11-24 00:33:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kaz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 4KAZ # _exptl.entry_id 4KAZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KAZ _cell.length_a 60.675 _cell.length_b 90.58 _cell.length_c 46.621 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KAZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 43 A ASP 23 1_555 D MG MG . B MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc2 A OE1 GLU 45 A GLU 25 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc3 A OD2 ASP 206 A ASP 186 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc4 C MG MG . A MG 301 1_555 E O HOH . A HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc5 C MG MG . A MG 301 1_555 B OP1 DC 20 B DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc6 E O HOH . A HOH 409 1_555 D MG MG . B MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc7 E O HOH . A HOH 410 1_555 D MG MG . B MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc8 E O HOH . A HOH 419 1_555 D MG MG . B MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc9 B O3' DC 19 B DC 19 1_555 D MG MG . B MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc10 B OP1 DC 20 B DC 20 1_555 D MG MG . B MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? hydrog WATSON-CRICK hydrog1 B N1 DG 3 B DG 3 1_555 B N3 DC 18 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 3 B DG 3 1_555 B O2 DC 18 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 3 B DG 3 1_555 B N4 DC 18 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DG 4 B DG 4 1_555 B N3 DC 17 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 DG 4 B DG 4 1_555 B O2 DC 17 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 DG 4 B DG 4 1_555 B N4 DC 17 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DC 5 B DC 5 1_555 B N1 DG 16 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N4 DC 5 B DC 5 1_555 B O6 DG 16 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O2 DC 5 B DC 5 1_555 B N2 DG 16 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DC 6 B DC 6 1_555 B N1 DG 15 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N4 DC 6 B DC 6 1_555 B O6 DG 15 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O2 DC 6 B DC 6 1_555 B N2 DG 15 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N3 DC 7 B DC 7 1_555 B N1 DG 14 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N4 DC 7 B DC 7 1_555 B O6 DG 14 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O2 DC 7 B DC 7 1_555 B N2 DG 14 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4KAZ _atom_sites.fract_transf_matrix[1][1] 0.016481 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01104 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 301 1 MG MG . D 3 MG B 1 101 1 MG MG . E 4 HOH A 1 401 1 HOH HOH . E 4 HOH A 2 402 2 HOH HOH . E 4 HOH A 3 403 3 HOH HOH . E 4 HOH A 4 404 4 HOH HOH . E 4 HOH A 5 405 5 HOH HOH . E 4 HOH A 6 406 7 HOH HOH . E 4 HOH A 7 407 8 HOH HOH . E 4 HOH A 8 408 10 HOH HOH . E 4 HOH A 9 409 11 HOH HOH . E 4 HOH A 10 410 12 HOH HOH . E 4 HOH A 11 411 13 HOH HOH . E 4 HOH A 12 412 14 HOH HOH . E 4 HOH A 13 413 15 HOH HOH . E 4 HOH A 14 414 16 HOH HOH . E 4 HOH A 15 415 17 HOH HOH . E 4 HOH A 16 416 18 HOH HOH . E 4 HOH A 17 417 19 HOH HOH . E 4 HOH A 18 418 20 HOH HOH . E 4 HOH A 19 419 21 HOH HOH . E 4 HOH A 20 420 22 HOH HOH . E 4 HOH A 21 421 23 HOH HOH . E 4 HOH A 22 422 24 HOH HOH . E 4 HOH A 23 423 26 HOH HOH . E 4 HOH A 24 424 27 HOH HOH . E 4 HOH A 25 425 28 HOH HOH . E 4 HOH A 26 426 29 HOH HOH . E 4 HOH A 27 427 30 HOH HOH . E 4 HOH A 28 428 31 HOH HOH . E 4 HOH A 29 429 32 HOH HOH . E 4 HOH A 30 430 34 HOH HOH . E 4 HOH A 31 431 35 HOH HOH . E 4 HOH A 32 432 36 HOH HOH . E 4 HOH A 33 433 37 HOH HOH . E 4 HOH A 34 434 39 HOH HOH . E 4 HOH A 35 435 40 HOH HOH . E 4 HOH A 36 436 41 HOH HOH . E 4 HOH A 37 437 43 HOH HOH . E 4 HOH A 38 438 44 HOH HOH . E 4 HOH A 39 439 45 HOH HOH . E 4 HOH A 40 440 46 HOH HOH . E 4 HOH A 41 441 47 HOH HOH . E 4 HOH A 42 442 48 HOH HOH . E 4 HOH A 43 443 49 HOH HOH . E 4 HOH A 44 444 50 HOH HOH . E 4 HOH A 45 445 51 HOH HOH . E 4 HOH A 46 446 52 HOH HOH . E 4 HOH A 47 447 53 HOH HOH . E 4 HOH A 48 448 54 HOH HOH . E 4 HOH A 49 449 55 HOH HOH . E 4 HOH A 50 450 56 HOH HOH . E 4 HOH A 51 451 58 HOH HOH . E 4 HOH A 52 452 59 HOH HOH . E 4 HOH A 53 453 60 HOH HOH . E 4 HOH A 54 454 61 HOH HOH . E 4 HOH A 55 455 63 HOH HOH . E 4 HOH A 56 456 64 HOH HOH . E 4 HOH A 57 457 65 HOH HOH . E 4 HOH A 58 458 66 HOH HOH . E 4 HOH A 59 459 67 HOH HOH . E 4 HOH A 60 460 68 HOH HOH . E 4 HOH A 61 461 69 HOH HOH . E 4 HOH A 62 462 70 HOH HOH . E 4 HOH A 63 463 71 HOH HOH . E 4 HOH A 64 464 72 HOH HOH . E 4 HOH A 65 465 74 HOH HOH . E 4 HOH A 66 466 75 HOH HOH . E 4 HOH A 67 467 76 HOH HOH . E 4 HOH A 68 468 77 HOH HOH . E 4 HOH A 69 469 78 HOH HOH . E 4 HOH A 70 470 79 HOH HOH . E 4 HOH A 71 471 80 HOH HOH . E 4 HOH A 72 472 82 HOH HOH . E 4 HOH A 73 473 83 HOH HOH . E 4 HOH A 74 474 84 HOH HOH . E 4 HOH A 75 475 85 HOH HOH . E 4 HOH A 76 476 86 HOH HOH . E 4 HOH A 77 477 87 HOH HOH . E 4 HOH A 78 478 88 HOH HOH . E 4 HOH A 79 479 89 HOH HOH . E 4 HOH A 80 480 90 HOH HOH . E 4 HOH A 81 481 91 HOH HOH . E 4 HOH A 82 482 92 HOH HOH . E 4 HOH A 83 483 94 HOH HOH . E 4 HOH A 84 484 95 HOH HOH . E 4 HOH A 85 485 98 HOH HOH . E 4 HOH A 86 486 99 HOH HOH . E 4 HOH A 87 487 100 HOH HOH . E 4 HOH A 88 488 101 HOH HOH . E 4 HOH A 89 489 102 HOH HOH . E 4 HOH A 90 490 103 HOH HOH . E 4 HOH A 91 491 104 HOH HOH . E 4 HOH A 92 492 105 HOH HOH . E 4 HOH A 93 493 106 HOH HOH . E 4 HOH A 94 494 107 HOH HOH . E 4 HOH A 95 495 108 HOH HOH . E 4 HOH A 96 496 109 HOH HOH . E 4 HOH A 97 497 111 HOH HOH . E 4 HOH A 98 498 114 HOH HOH . E 4 HOH A 99 499 115 HOH HOH . E 4 HOH A 100 500 116 HOH HOH . E 4 HOH A 101 501 118 HOH HOH . E 4 HOH A 102 502 119 HOH HOH . E 4 HOH A 103 503 120 HOH HOH . E 4 HOH A 104 504 121 HOH HOH . E 4 HOH A 105 505 122 HOH HOH . E 4 HOH A 106 506 123 HOH HOH . E 4 HOH A 107 507 126 HOH HOH . E 4 HOH A 108 508 127 HOH HOH . E 4 HOH A 109 509 128 HOH HOH . E 4 HOH A 110 510 129 HOH HOH . E 4 HOH A 111 511 130 HOH HOH . E 4 HOH A 112 512 131 HOH HOH . E 4 HOH A 113 513 132 HOH HOH . E 4 HOH A 114 514 133 HOH HOH . E 4 HOH A 115 515 134 HOH HOH . E 4 HOH A 116 516 135 HOH HOH . E 4 HOH A 117 517 136 HOH HOH . E 4 HOH A 118 518 137 HOH HOH . E 4 HOH A 119 519 138 HOH HOH . E 4 HOH A 120 520 139 HOH HOH . E 4 HOH A 121 521 141 HOH HOH . E 4 HOH A 122 522 142 HOH HOH . E 4 HOH A 123 523 143 HOH HOH . E 4 HOH A 124 524 144 HOH HOH . E 4 HOH A 125 525 145 HOH HOH . E 4 HOH A 126 526 147 HOH HOH . E 4 HOH A 127 527 148 HOH HOH . E 4 HOH A 128 528 149 HOH HOH . E 4 HOH A 129 529 150 HOH HOH . E 4 HOH A 130 530 151 HOH HOH . E 4 HOH A 131 531 154 HOH HOH . E 4 HOH A 132 532 155 HOH HOH . E 4 HOH A 133 533 156 HOH HOH . E 4 HOH A 134 534 157 HOH HOH . E 4 HOH A 135 535 158 HOH HOH . E 4 HOH A 136 536 159 HOH HOH . E 4 HOH A 137 537 160 HOH HOH . E 4 HOH A 138 538 161 HOH HOH . E 4 HOH A 139 539 162 HOH HOH . E 4 HOH A 140 540 163 HOH HOH . E 4 HOH A 141 541 166 HOH HOH . E 4 HOH A 142 542 125 HOH HOH . F 4 HOH B 1 201 6 HOH HOH . F 4 HOH B 2 202 9 HOH HOH . F 4 HOH B 3 203 25 HOH HOH . F 4 HOH B 4 204 33 HOH HOH . F 4 HOH B 5 205 38 HOH HOH . F 4 HOH B 6 206 42 HOH HOH . F 4 HOH B 7 207 57 HOH HOH . F 4 HOH B 8 208 62 HOH HOH . F 4 HOH B 9 209 73 HOH HOH . F 4 HOH B 10 210 81 HOH HOH . F 4 HOH B 11 211 93 HOH HOH . F 4 HOH B 12 212 96 HOH HOH . F 4 HOH B 13 213 97 HOH HOH . F 4 HOH B 14 214 110 HOH HOH . F 4 HOH B 15 215 112 HOH HOH . F 4 HOH B 16 216 113 HOH HOH . F 4 HOH B 17 217 117 HOH HOH . F 4 HOH B 18 218 124 HOH HOH . F 4 HOH B 19 219 140 HOH HOH . F 4 HOH B 20 220 146 HOH HOH . F 4 HOH B 21 221 152 HOH HOH . F 4 HOH B 22 222 153 HOH HOH . F 4 HOH B 23 223 164 HOH HOH . F 4 HOH B 24 224 165 HOH HOH . F 4 HOH B 25 225 167 HOH HOH . F 4 HOH B 26 226 168 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -32.145 _atom_site.Cartn_y 12.787 _atom_site.Cartn_z -6.787 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #