data_4KBA # _model_server_result.job_id zO5b76KgEzZ1DMR8bM_uqg _model_server_result.datetime_utc '2025-01-10 21:12:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kba # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":401}' # _entry.id 4KBA # _exptl.entry_id 4KBA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.352 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-[3-(4-fluorophenyl)-1-methyl-1H-pyrazol-4-yl]-2,3,4,5-tetrahydropyrido[2,3-f][1,4]oxazepine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 108 _cell.angle_beta 105.71 _cell.angle_gamma 93 _cell.entry_id 4KBA _cell.length_a 48.689 _cell.length_b 83.964 _cell.length_c 89.29 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KBA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 PISA dimeric 2 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,R 1 1 B,H,I,J,S 2 1 C,K,L,M,T 3 1 D,N,O,P,Q,U 4 1 A,E,F,G,R 5 1 B,H,I,J,S 5 2 D,N,O,P,Q,U 6 1 C,K,L,M,T 6 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 -24.176916 -28.897052 80.951474 3 'crystal symmetry operation' 1_656 x+1,y,z+1 1 0 0 0 1 0 0 0 1 24.512084 -28.897052 80.951474 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N ? 2 N N N # _chem_comp.formula 'C18 H17 F N4 O' _chem_comp.formula_weight 324.352 _chem_comp.id 1QM _chem_comp.mon_nstd_flag . _chem_comp.name 9-[3-(4-fluorophenyl)-1-methyl-1H-pyrazol-4-yl]-2,3,4,5-tetrahydropyrido[2,3-f][1,4]oxazepine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 N3 1QM sing 1 n n C7 C8 1QM doub 2 n y C7 C6 1QM sing 3 n y C8 C9 1QM sing 4 n y N2 N3 1QM sing 5 n y N2 C5 1QM doub 6 n y N3 C12 1QM sing 7 n y C5 C6 1QM sing 8 n n C5 C4 1QM sing 9 n y C6 C11 1QM doub 10 n y C9 F1 1QM sing 11 n n C9 C10 1QM doub 12 n y C12 C4 1QM doub 13 n y C4 C1 1QM sing 14 n n C11 C10 1QM sing 15 n y C2 C1 1QM doub 16 n y C2 C3 1QM sing 17 n y C1 C15 1QM sing 18 n y C3 N1 1QM doub 19 n y C15 O1 1QM sing 20 n n C15 C14 1QM doub 21 n y C16 O1 1QM sing 22 n n C16 C17 1QM sing 23 n n N1 C14 1QM sing 24 n y C14 C18 1QM sing 25 n n C17 N4 1QM sing 26 n n N4 C18 1QM sing 27 n n C7 H3 1QM sing 28 n n C13 H8 1QM sing 29 n n C13 H10 1QM sing 30 n n C13 H9 1QM sing 31 n n C8 H4 1QM sing 32 n n C18 H17 1QM sing 33 n n C18 H16 1QM sing 34 n n C16 H11 1QM sing 35 n n C16 H12 1QM sing 36 n n C2 H1 1QM sing 37 n n C3 H2 1QM sing 38 n n C10 H5 1QM sing 39 n n C11 H6 1QM sing 40 n n C12 H7 1QM sing 41 n n N4 H13 1QM sing 42 n n C17 H14 1QM sing 43 n n C17 H15 1QM sing 44 n n # _atom_sites.entry_id 4KBA _atom_sites.fract_transf_matrix[1][1] 0.020539 _atom_sites.fract_transf_matrix[1][2] 0.001076 _atom_sites.fract_transf_matrix[1][3] 0.006518 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011926 _atom_sites.fract_transf_matrix[2][3] 0.004257 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012353 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 1QM A 1 401 4000 1QM 1QM . F 3 SO4 A 1 402 404 SO4 SO4 . G 3 SO4 A 1 403 410 SO4 SO4 . H 2 1QM B 1 401 4000 1QM 1QM . I 3 SO4 B 1 402 403 SO4 SO4 . J 3 SO4 B 1 403 409 SO4 SO4 . K 2 1QM C 1 401 4000 1QM 1QM . L 3 SO4 C 1 402 401 SO4 SO4 . M 3 SO4 C 1 403 402 SO4 SO4 . N 2 1QM D 1 401 4000 1QM 1QM . O 3 SO4 D 1 402 407 SO4 SO4 . P 3 SO4 D 1 403 411 SO4 SO4 . Q 3 SO4 D 1 404 412 SO4 SO4 . R 4 HOH A 1 501 8 HOH HOH . R 4 HOH A 2 502 18 HOH HOH . R 4 HOH A 3 503 19 HOH HOH . R 4 HOH A 4 504 23 HOH HOH . R 4 HOH A 5 505 25 HOH HOH . R 4 HOH A 6 506 27 HOH HOH . R 4 HOH A 7 507 30 HOH HOH . R 4 HOH A 8 508 31 HOH HOH . R 4 HOH A 9 509 35 HOH HOH . R 4 HOH A 10 510 38 HOH HOH . R 4 HOH A 11 511 50 HOH HOH . R 4 HOH A 12 512 51 HOH HOH . R 4 HOH A 13 513 58 HOH HOH . R 4 HOH A 14 514 65 HOH HOH . R 4 HOH A 15 515 66 HOH HOH . R 4 HOH A 16 516 67 HOH HOH . R 4 HOH A 17 517 68 HOH HOH . R 4 HOH A 18 518 69 HOH HOH . R 4 HOH A 19 519 70 HOH HOH . R 4 HOH A 20 520 74 HOH HOH . R 4 HOH A 21 521 77 HOH HOH . R 4 HOH A 22 522 80 HOH HOH . R 4 HOH A 23 523 87 HOH HOH . R 4 HOH A 24 524 95 HOH HOH . R 4 HOH A 25 525 97 HOH HOH . R 4 HOH A 26 526 98 HOH HOH . R 4 HOH A 27 527 100 HOH HOH . R 4 HOH A 28 528 103 HOH HOH . R 4 HOH A 29 529 109 HOH HOH . R 4 HOH A 30 530 114 HOH HOH . R 4 HOH A 31 531 125 HOH HOH . R 4 HOH A 32 532 133 HOH HOH . R 4 HOH A 33 533 139 HOH HOH . R 4 HOH A 34 534 141 HOH HOH . R 4 HOH A 35 535 144 HOH HOH . R 4 HOH A 36 536 145 HOH HOH . R 4 HOH A 37 537 146 HOH HOH . R 4 HOH A 38 538 150 HOH HOH . R 4 HOH A 39 539 153 HOH HOH . R 4 HOH A 40 540 156 HOH HOH . R 4 HOH A 41 541 160 HOH HOH . R 4 HOH A 42 542 164 HOH HOH . R 4 HOH A 43 543 168 HOH HOH . R 4 HOH A 44 544 169 HOH HOH . R 4 HOH A 45 545 173 HOH HOH . R 4 HOH A 46 546 175 HOH HOH . R 4 HOH A 47 547 176 HOH HOH . S 4 HOH B 1 501 4 HOH HOH . S 4 HOH B 2 502 7 HOH HOH . S 4 HOH B 3 503 11 HOH HOH . S 4 HOH B 4 504 13 HOH HOH . S 4 HOH B 5 505 14 HOH HOH . S 4 HOH B 6 506 21 HOH HOH . S 4 HOH B 7 507 24 HOH HOH . S 4 HOH B 8 508 33 HOH HOH . S 4 HOH B 9 509 39 HOH HOH . S 4 HOH B 10 510 45 HOH HOH . S 4 HOH B 11 511 53 HOH HOH . S 4 HOH B 12 512 57 HOH HOH . S 4 HOH B 13 513 60 HOH HOH . S 4 HOH B 14 514 64 HOH HOH . S 4 HOH B 15 515 71 HOH HOH . S 4 HOH B 16 516 72 HOH HOH . S 4 HOH B 17 517 85 HOH HOH . S 4 HOH B 18 518 89 HOH HOH . S 4 HOH B 19 519 94 HOH HOH . S 4 HOH B 20 520 107 HOH HOH . S 4 HOH B 21 521 108 HOH HOH . S 4 HOH B 22 522 110 HOH HOH . S 4 HOH B 23 523 111 HOH HOH . S 4 HOH B 24 524 116 HOH HOH . S 4 HOH B 25 525 117 HOH HOH . S 4 HOH B 26 526 118 HOH HOH . S 4 HOH B 27 527 123 HOH HOH . S 4 HOH B 28 528 130 HOH HOH . S 4 HOH B 29 529 137 HOH HOH . S 4 HOH B 30 530 158 HOH HOH . S 4 HOH B 31 531 165 HOH HOH . S 4 HOH B 32 532 166 HOH HOH . S 4 HOH B 33 533 170 HOH HOH . T 4 HOH C 1 501 1 HOH HOH . T 4 HOH C 2 502 3 HOH HOH . T 4 HOH C 3 503 9 HOH HOH . T 4 HOH C 4 504 12 HOH HOH . T 4 HOH C 5 505 15 HOH HOH . T 4 HOH C 6 506 16 HOH HOH . T 4 HOH C 7 507 26 HOH HOH . T 4 HOH C 8 508 28 HOH HOH . T 4 HOH C 9 509 29 HOH HOH . T 4 HOH C 10 510 36 HOH HOH . T 4 HOH C 11 511 37 HOH HOH . T 4 HOH C 12 512 40 HOH HOH . T 4 HOH C 13 513 41 HOH HOH . T 4 HOH C 14 514 43 HOH HOH . T 4 HOH C 15 515 44 HOH HOH . T 4 HOH C 16 516 48 HOH HOH . T 4 HOH C 17 517 52 HOH HOH . T 4 HOH C 18 518 54 HOH HOH . T 4 HOH C 19 519 55 HOH HOH . T 4 HOH C 20 520 61 HOH HOH . T 4 HOH C 21 521 62 HOH HOH . T 4 HOH C 22 522 63 HOH HOH . T 4 HOH C 23 523 73 HOH HOH . T 4 HOH C 24 524 78 HOH HOH . T 4 HOH C 25 525 79 HOH HOH . T 4 HOH C 26 526 81 HOH HOH . T 4 HOH C 27 527 88 HOH HOH . T 4 HOH C 28 528 90 HOH HOH . T 4 HOH C 29 529 91 HOH HOH . T 4 HOH C 30 530 92 HOH HOH . T 4 HOH C 31 531 93 HOH HOH . T 4 HOH C 32 532 96 HOH HOH . T 4 HOH C 33 533 101 HOH HOH . T 4 HOH C 34 534 104 HOH HOH . T 4 HOH C 35 535 106 HOH HOH . T 4 HOH C 36 536 112 HOH HOH . T 4 HOH C 37 537 113 HOH HOH . T 4 HOH C 38 538 119 HOH HOH . T 4 HOH C 39 539 120 HOH HOH . T 4 HOH C 40 540 121 HOH HOH . T 4 HOH C 41 541 122 HOH HOH . T 4 HOH C 42 542 127 HOH HOH . T 4 HOH C 43 543 129 HOH HOH . T 4 HOH C 44 544 131 HOH HOH . T 4 HOH C 45 545 132 HOH HOH . T 4 HOH C 46 546 134 HOH HOH . T 4 HOH C 47 547 135 HOH HOH . T 4 HOH C 48 548 143 HOH HOH . T 4 HOH C 49 549 149 HOH HOH . T 4 HOH C 50 550 152 HOH HOH . T 4 HOH C 51 551 154 HOH HOH . T 4 HOH C 52 552 159 HOH HOH . T 4 HOH C 53 553 162 HOH HOH . T 4 HOH C 54 554 163 HOH HOH . T 4 HOH C 55 555 172 HOH HOH . T 4 HOH C 56 556 174 HOH HOH . U 4 HOH D 1 501 2 HOH HOH . U 4 HOH D 2 502 5 HOH HOH . U 4 HOH D 3 503 6 HOH HOH . U 4 HOH D 4 504 10 HOH HOH . U 4 HOH D 5 505 17 HOH HOH . U 4 HOH D 6 506 20 HOH HOH . U 4 HOH D 7 507 22 HOH HOH . U 4 HOH D 8 508 32 HOH HOH . U 4 HOH D 9 509 34 HOH HOH . U 4 HOH D 10 510 42 HOH HOH . U 4 HOH D 11 511 46 HOH HOH . U 4 HOH D 12 512 47 HOH HOH . U 4 HOH D 13 513 49 HOH HOH . U 4 HOH D 14 514 56 HOH HOH . U 4 HOH D 15 515 59 HOH HOH . U 4 HOH D 16 516 75 HOH HOH . U 4 HOH D 17 517 76 HOH HOH . U 4 HOH D 18 518 82 HOH HOH . U 4 HOH D 19 519 83 HOH HOH . U 4 HOH D 20 520 84 HOH HOH . U 4 HOH D 21 521 86 HOH HOH . U 4 HOH D 22 522 99 HOH HOH . U 4 HOH D 23 523 102 HOH HOH . U 4 HOH D 24 524 105 HOH HOH . U 4 HOH D 25 525 115 HOH HOH . U 4 HOH D 26 526 124 HOH HOH . U 4 HOH D 27 527 126 HOH HOH . U 4 HOH D 28 528 128 HOH HOH . U 4 HOH D 29 529 136 HOH HOH . U 4 HOH D 30 530 138 HOH HOH . U 4 HOH D 31 531 140 HOH HOH . U 4 HOH D 32 532 142 HOH HOH . U 4 HOH D 33 533 147 HOH HOH . U 4 HOH D 34 534 148 HOH HOH . U 4 HOH D 35 535 151 HOH HOH . U 4 HOH D 36 536 155 HOH HOH . U 4 HOH D 37 537 157 HOH HOH . U 4 HOH D 38 538 161 HOH HOH . U 4 HOH D 39 539 167 HOH HOH . U 4 HOH D 40 540 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 1QM . . . K 2 -6.666 -22.75 -50.052 1 30.83 ? N3 1QM 401 C 1 HETATM 2 C C4 1QM . . . K 2 -6.377 -20.972 -51.363 1 28.85 ? C4 1QM 401 C 1 HETATM 3 N N2 1QM . . . K 2 -7.754 -21.969 -49.811 1 30.13 ? N2 1QM 401 C 1 HETATM 4 C C7 1QM . . . K 2 -9.256 -19.455 -49.493 1 25.05 ? C7 1QM 401 C 1 HETATM 5 C C6 1QM . . . K 2 -8.658 -19.885 -50.677 1 26.6 ? C6 1QM 401 C 1 HETATM 6 C C9 1QM . . . K 2 -10.782 -18.129 -50.777 1 28.03 ? C9 1QM 401 C 1 HETATM 7 C C13 1QM . . . K 2 -6.511 -24.06 -49.41 1 32.33 ? C13 1QM 401 C 1 HETATM 8 C C8 1QM . . . K 2 -10.316 -18.562 -49.531 1 24.65 ? C8 1QM 401 C 1 HETATM 9 C C18 1QM . . . K 2 -3.801 -19.661 -55.482 1 28.95 ? C18 1QM 401 C 1 HETATM 10 C C16 1QM . . . K 2 -3.395 -21.967 -53.49 1 32.63 ? C16 1QM 401 C 1 HETATM 11 C C1 1QM . . . K 2 -5.832 -19.993 -52.267 1 27.37 ? C1 1QM 401 C 1 HETATM 12 C C2 1QM . . . K 2 -6.097 -18.64 -52.056 1 27.05 ? C2 1QM 401 C 1 HETATM 13 C C3 1QM . . . K 2 -5.566 -17.694 -52.936 1 29.16 ? C3 1QM 401 C 1 HETATM 14 N N1 1QM . . . K 2 -4.825 -18.007 -54.02 1 28.92 ? N1 1QM 401 C 1 HETATM 15 C C5 1QM . . . K 2 -7.601 -20.878 -50.622 1 29.19 ? C5 1QM 401 C 1 HETATM 16 C C10 1QM . . . K 2 -10.199 -18.562 -51.972 1 26.79 ? C10 1QM 401 C 1 HETATM 17 C C11 1QM . . . K 2 -9.12 -19.431 -51.911 1 27.68 ? C11 1QM 401 C 1 HETATM 18 F F1 1QM . . . K 2 -11.798 -17.277 -50.83 1 29.82 ? F1 1QM 401 C 1 HETATM 19 C C12 1QM . . . K 2 -5.802 -22.186 -50.984 1 28.79 ? C12 1QM 401 C 1 HETATM 20 C C14 1QM . . . K 2 -4.576 -19.321 -54.232 1 28.7 ? C14 1QM 401 C 1 HETATM 21 C C15 1QM . . . K 2 -5.025 -20.326 -53.363 1 27.98 ? C15 1QM 401 C 1 HETATM 22 O O1 1QM . . . K 2 -4.764 -21.643 -53.623 1 31.65 ? O1 1QM 401 C 1 HETATM 23 N N4 1QM . . . K 2 -2.525 -20.326 -55.209 1 29.59 ? N4 1QM 401 C 1 HETATM 24 C C17 1QM . . . K 2 -2.648 -21.73 -54.813 1 31.61 ? C17 1QM 401 C 1 HETATM 25 H H3 1QM . . . K 2 -8.892 -19.821 -48.527 0 24.68 ? H3 1QM 401 C 1 HETATM 26 H H8 1QM . . . K 2 -7.19 -24.173 -48.546 0 32.38 ? H8 1QM 401 C 1 HETATM 27 H H10 1QM . . . K 2 -5.475 -24.194 -49.051 0 31.83 ? H10 1QM 401 C 1 HETATM 28 H H9 1QM . . . K 2 -6.735 -24.873 -50.124 0 32.71 ? H9 1QM 401 C 1 HETATM 29 H H4 1QM . . . K 2 -10.772 -18.205 -48.605 0 24.77 ? H4 1QM 401 C 1 HETATM 30 H H17 1QM . . . K 2 -3.575 -18.75 -56.086 0 29.14 ? H17 1QM 401 C 1 HETATM 31 H H16 1QM . . . K 2 -4.445 -20.289 -56.143 0 29.38 ? H16 1QM 401 C 1 HETATM 32 H H11 1QM . . . K 2 -2.902 -21.448 -52.639 0 32.2 ? H11 1QM 401 C 1 HETATM 33 H H12 1QM . . . K 2 -3.411 -23.05 -53.239 0 32.74 ? H12 1QM 401 C 1 HETATM 34 H H1 1QM . . . K 2 -6.704 -18.325 -51.205 0 27.02 ? H1 1QM 401 C 1 HETATM 35 H H2 1QM . . . K 2 -5.741 -16.618 -52.801 0 29.28 ? H2 1QM 401 C 1 HETATM 36 H H5 1QM . . . K 2 -10.587 -18.22 -52.934 0 27.29 ? H5 1QM 401 C 1 HETATM 37 H H6 1QM . . . K 2 -8.634 -19.764 -52.833 0 27.7 ? H6 1QM 401 C 1 HETATM 38 H H7 1QM . . . K 2 -4.876 -22.657 -51.297 0 28.63 ? H7 1QM 401 C 1 HETATM 39 H H13 1QM . . . K 2 -1.963 -19.788 -54.538 0 29.2 ? H13 1QM 401 C 1 HETATM 40 H H14 1QM . . . K 2 -1.623 -22.163 -54.738 0 31.42 ? H14 1QM 401 C 1 HETATM 41 H H15 1QM . . . K 2 -3.138 -22.299 -55.637 0 32.15 ? H15 1QM 401 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #