data_4KC3 # _model_server_result.job_id iRdYMrFfSg89AocsXRCPDA _model_server_result.datetime_utc '2024-12-08 06:05:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kc3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 4KC3 # _exptl.entry_id 4KC3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4KC3 _cell.length_a 329.924 _cell.length_b 329.924 _cell.length_c 43.731 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KC3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 18 B CYS 36 1_555 B SG CYS 69 B CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 B SG CYS 93 B CYS 111 1_555 B SG CYS 133 B CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 115 B CYS 133 1_555 B SG CYS 163 B CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 B SG CYS 217 B CYS 235 1_555 B SG CYS 285 B CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 220 B CYS 238 1_555 B SG CYS 264 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A C LYS 69 A LYS 180 1_555 A N MSE 70 A MSE 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 70 A MSE 181 1_555 A N LEU 71 A LEU 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C LEU 71 A LEU 182 1_555 A N MSE 72 A MSE 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 72 A MSE 183 1_555 A N VAL 73 A VAL 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 A C ASN 111 A ASN 222 1_555 A N MSE 112 A MSE 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C MSE 112 A MSE 223 1_555 A N HIS 113 A HIS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 B ND2 ASN 77 B ASN 95 1_555 C C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale8 B ND2 ASN 122 B ASN 140 1_555 D C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale9 B ND2 ASN 173 B ASN 191 1_555 E C1 NAG . B NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 254 n n C1 O1 NAG sing 255 n n C1 O5 NAG sing 256 n n C1 H1 NAG sing 257 n n C2 C3 NAG sing 258 n n C2 N2 NAG sing 259 n n C2 H2 NAG sing 260 n n C3 C4 NAG sing 261 n n C3 O3 NAG sing 262 n n C3 H3 NAG sing 263 n n C4 C5 NAG sing 264 n n C4 O4 NAG sing 265 n n C4 H4 NAG sing 266 n n C5 C6 NAG sing 267 n n C5 O5 NAG sing 268 n n C5 H5 NAG sing 269 n n C6 O6 NAG sing 270 n n C6 H61 NAG sing 271 n n C6 H62 NAG sing 272 n n C7 C8 NAG sing 273 n n C7 N2 NAG sing 274 n n C7 O7 NAG doub 275 n n C8 H81 NAG sing 276 n n C8 H82 NAG sing 277 n n C8 H83 NAG sing 278 n n N2 HN2 NAG sing 279 n n O1 HO1 NAG sing 280 n n O3 HO3 NAG sing 281 n n O4 HO4 NAG sing 282 n n O6 HO6 NAG sing 283 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4KC3 _atom_sites.fract_transf_matrix[1][1] 0.003031 _atom_sites.fract_transf_matrix[1][2] 0.00175 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022867 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG B 1 401 401 NAG NAG . D 3 NAG B 1 402 402 NAG NAG . E 3 NAG B 1 403 403 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 23.812 -8.7 11.765 1 110 ? C1 NAG 403 B 1 HETATM 2 C C2 NAG . . . E 3 22.498 -9.419 12.078 1 110 ? C2 NAG 403 B 1 HETATM 3 C C3 NAG . . . E 3 21.353 -8.429 12.097 1 110 ? C3 NAG 403 B 1 HETATM 4 C C4 NAG . . . E 3 21.713 -7.274 13.047 1 110 ? C4 NAG 403 B 1 HETATM 5 C C5 NAG . . . E 3 23.018 -6.601 12.604 1 110 ? C5 NAG 403 B 1 HETATM 6 C C6 NAG . . . E 3 23.35 -5.416 13.516 1 110 ? C6 NAG 403 B 1 HETATM 7 C C7 NAG . . . E 3 21.716 -11.601 11.381 1 110 ? C7 NAG 403 B 1 HETATM 8 C C8 NAG . . . E 3 20.4 -11.954 10.72 1 110 ? C8 NAG 403 B 1 HETATM 9 N N2 NAG . . . E 3 22.209 -10.406 11.058 1 110 ? N2 NAG 403 B 1 HETATM 10 O O3 NAG . . . E 3 20.195 -9.147 12.476 1 110 ? O3 NAG 403 B 1 HETATM 11 O O4 NAG . . . E 3 20.708 -6.276 13.123 1 110 ? O4 NAG 403 B 1 HETATM 12 O O5 NAG . . . E 3 24.064 -7.563 12.594 1 110 ? O5 NAG 403 B 1 HETATM 13 O O6 NAG . . . E 3 22.658 -5.553 14.75 1 110 ? O6 NAG 403 B 1 HETATM 14 O O7 NAG . . . E 3 22.293 -12.372 12.175 1 110 ? O7 NAG 403 B 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 14 #