data_4KCH
#
_model_server_result.job_id            QXx8VafMemEo-Z_cmQ4e5g 
_model_server_result.datetime_utc      '2024-11-23 01:12:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kch 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":802}' 
#
_entry.id    4KCH 
#
_exptl.entry_id    4KCH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              241.247 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5,6,7,8-TETRAHYDROBIOPTERIN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4KCH 
_cell.length_a            51.702 
_cell.length_b            111.554 
_cell.length_c            164.964 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KCH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc4 G ZN ZN . A ZN 805 1_555 B SG CYS 30 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc5 G ZN ZN . A ZN 805 1_555 B SG CYS 35 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 H FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
#
_chem_comp.formula           'C9 H15 N5 O3' 
_chem_comp.formula_weight    241.247 
_chem_comp.id                H4B 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5,6,7,8-TETRAHYDROBIOPTERIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 H4B doub 184 n y 
N1 C8A H4B sing 185 n y 
C2 N2 H4B sing 186 n n 
C2 N3 H4B sing 187 n y 
N2 HN21 H4B sing 188 n n 
N2 HN22 H4B sing 189 n n 
N3 C4 H4B sing 190 n y 
N3 HN3 H4B sing 191 n n 
C4 O4 H4B doub 192 n n 
C4 C4A H4B sing 193 n y 
C4A C8A H4B doub 194 n y 
C4A N5 H4B sing 195 n n 
C8A N8 H4B sing 196 n n 
N5 C6 H4B sing 197 n n 
N5 HN5 H4B sing 198 n n 
N8 C7 H4B sing 199 n n 
N8 HN8 H4B sing 200 n n 
C6 C7 H4B sing 201 n n 
C6 C9 H4B sing 202 n n 
C6 H6 H4B sing 203 n n 
C7 H71 H4B sing 204 n n 
C7 H72 H4B sing 205 n n 
C9 O9 H4B sing 206 n n 
C9 C10 H4B sing 207 n n 
C9 H9 H4B sing 208 n n 
O9 HO9 H4B sing 209 n n 
C10 C11 H4B sing 210 n n 
C10 O10 H4B sing 211 n n 
C10 H10 H4B sing 212 n n 
C11 H111 H4B sing 213 n n 
C11 H112 H4B sing 214 n n 
C11 H113 H4B sing 215 n n 
O10 HO0 H4B sing 216 n n 
#
_atom_sites.entry_id                     4KCH 
_atom_sites.fract_transf_matrix[1][1]    0.019342 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008964 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006062 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 801 750 HEM HEM . 
D 3 H4B A 1 802 760 H4B BH4 . 
E 4 ACT A 1 803 860 ACT ACT . 
F 5 H38 A 1 804 800 H38 H38 . 
G 6 ZN A 1 805 900 ZN ZN . 
H 2 HEM B 1 801 750 HEM HEM . 
I 3 H4B B 1 802 760 H4B BH4 . 
J 4 ACT B 1 803 860 ACT ACT . 
K 5 H38 B 1 804 800 H38 H38 . 
L 7 HOH A 1 901 2 HOH HOH . 
L 7 HOH A 2 902 5 HOH HOH . 
L 7 HOH A 3 903 8 HOH HOH . 
L 7 HOH A 4 904 9 HOH HOH . 
L 7 HOH A 5 905 13 HOH HOH . 
L 7 HOH A 6 906 15 HOH HOH . 
L 7 HOH A 7 907 16 HOH HOH . 
L 7 HOH A 8 908 19 HOH HOH . 
L 7 HOH A 9 909 25 HOH HOH . 
L 7 HOH A 10 910 27 HOH HOH . 
L 7 HOH A 11 911 29 HOH HOH . 
L 7 HOH A 12 912 34 HOH HOH . 
L 7 HOH A 13 913 36 HOH HOH . 
L 7 HOH A 14 914 37 HOH HOH . 
L 7 HOH A 15 915 39 HOH HOH . 
L 7 HOH A 16 916 43 HOH HOH . 
L 7 HOH A 17 917 47 HOH HOH . 
L 7 HOH A 18 918 49 HOH HOH . 
L 7 HOH A 19 919 52 HOH HOH . 
L 7 HOH A 20 920 55 HOH HOH . 
L 7 HOH A 21 921 57 HOH HOH . 
L 7 HOH A 22 922 60 HOH HOH . 
L 7 HOH A 23 923 61 HOH HOH . 
L 7 HOH A 24 924 62 HOH HOH . 
L 7 HOH A 25 925 63 HOH HOH . 
L 7 HOH A 26 926 67 HOH HOH . 
L 7 HOH A 27 927 72 HOH HOH . 
L 7 HOH A 28 928 73 HOH HOH . 
L 7 HOH A 29 929 76 HOH HOH . 
L 7 HOH A 30 930 83 HOH HOH . 
L 7 HOH A 31 931 86 HOH HOH . 
L 7 HOH A 32 932 93 HOH HOH . 
L 7 HOH A 33 933 95 HOH HOH . 
L 7 HOH A 34 934 96 HOH HOH . 
L 7 HOH A 35 935 98 HOH HOH . 
L 7 HOH A 36 936 100 HOH HOH . 
L 7 HOH A 37 937 101 HOH HOH . 
L 7 HOH A 38 938 103 HOH HOH . 
L 7 HOH A 39 939 106 HOH HOH . 
L 7 HOH A 40 940 107 HOH HOH . 
L 7 HOH A 41 941 108 HOH HOH . 
L 7 HOH A 42 942 110 HOH HOH . 
L 7 HOH A 43 943 112 HOH HOH . 
L 7 HOH A 44 944 113 HOH HOH . 
L 7 HOH A 45 945 116 HOH HOH . 
L 7 HOH A 46 946 117 HOH HOH . 
L 7 HOH A 47 947 118 HOH HOH . 
L 7 HOH A 48 948 120 HOH HOH . 
L 7 HOH A 49 949 122 HOH HOH . 
L 7 HOH A 50 950 123 HOH HOH . 
L 7 HOH A 51 951 124 HOH HOH . 
L 7 HOH A 52 952 125 HOH HOH . 
L 7 HOH A 53 953 131 HOH HOH . 
L 7 HOH A 54 954 132 HOH HOH . 
L 7 HOH A 55 955 133 HOH HOH . 
L 7 HOH A 56 956 134 HOH HOH . 
L 7 HOH A 57 957 135 HOH HOH . 
L 7 HOH A 58 958 136 HOH HOH . 
L 7 HOH A 59 959 137 HOH HOH . 
L 7 HOH A 60 960 138 HOH HOH . 
L 7 HOH A 61 961 139 HOH HOH . 
L 7 HOH A 62 962 140 HOH HOH . 
L 7 HOH A 63 963 141 HOH HOH . 
L 7 HOH A 64 964 142 HOH HOH . 
L 7 HOH A 65 965 143 HOH HOH . 
L 7 HOH A 66 966 145 HOH HOH . 
L 7 HOH A 67 967 146 HOH HOH . 
L 7 HOH A 68 968 147 HOH HOH . 
L 7 HOH A 69 969 149 HOH HOH . 
M 7 HOH B 1 901 1 HOH HOH . 
M 7 HOH B 2 902 3 HOH HOH . 
M 7 HOH B 3 903 4 HOH HOH . 
M 7 HOH B 4 904 6 HOH HOH . 
M 7 HOH B 5 905 7 HOH HOH . 
M 7 HOH B 6 906 10 HOH HOH . 
M 7 HOH B 7 907 11 HOH HOH . 
M 7 HOH B 8 908 12 HOH HOH . 
M 7 HOH B 9 909 14 HOH HOH . 
M 7 HOH B 10 910 17 HOH HOH . 
M 7 HOH B 11 911 18 HOH HOH . 
M 7 HOH B 12 912 20 HOH HOH . 
M 7 HOH B 13 913 21 HOH HOH . 
M 7 HOH B 14 914 22 HOH HOH . 
M 7 HOH B 15 915 23 HOH HOH . 
M 7 HOH B 16 916 24 HOH HOH . 
M 7 HOH B 17 917 26 HOH HOH . 
M 7 HOH B 18 918 28 HOH HOH . 
M 7 HOH B 19 919 30 HOH HOH . 
M 7 HOH B 20 920 31 HOH HOH . 
M 7 HOH B 21 921 32 HOH HOH . 
M 7 HOH B 22 922 33 HOH HOH . 
M 7 HOH B 23 923 35 HOH HOH . 
M 7 HOH B 24 924 38 HOH HOH . 
M 7 HOH B 25 925 40 HOH HOH . 
M 7 HOH B 26 926 41 HOH HOH . 
M 7 HOH B 27 927 42 HOH HOH . 
M 7 HOH B 28 928 44 HOH HOH . 
M 7 HOH B 29 929 45 HOH HOH . 
M 7 HOH B 30 930 46 HOH HOH . 
M 7 HOH B 31 931 48 HOH HOH . 
M 7 HOH B 32 932 50 HOH HOH . 
M 7 HOH B 33 933 51 HOH HOH . 
M 7 HOH B 34 934 53 HOH HOH . 
M 7 HOH B 35 935 54 HOH HOH . 
M 7 HOH B 36 936 56 HOH HOH . 
M 7 HOH B 37 937 58 HOH HOH . 
M 7 HOH B 38 938 59 HOH HOH . 
M 7 HOH B 39 939 64 HOH HOH . 
M 7 HOH B 40 940 65 HOH HOH . 
M 7 HOH B 41 941 66 HOH HOH . 
M 7 HOH B 42 942 68 HOH HOH . 
M 7 HOH B 43 943 69 HOH HOH . 
M 7 HOH B 44 944 70 HOH HOH . 
M 7 HOH B 45 945 71 HOH HOH . 
M 7 HOH B 46 946 74 HOH HOH . 
M 7 HOH B 47 947 75 HOH HOH . 
M 7 HOH B 48 948 77 HOH HOH . 
M 7 HOH B 49 949 78 HOH HOH . 
M 7 HOH B 50 950 79 HOH HOH . 
M 7 HOH B 51 951 80 HOH HOH . 
M 7 HOH B 52 952 81 HOH HOH . 
M 7 HOH B 53 953 82 HOH HOH . 
M 7 HOH B 54 954 84 HOH HOH . 
M 7 HOH B 55 955 85 HOH HOH . 
M 7 HOH B 56 956 87 HOH HOH . 
M 7 HOH B 57 957 88 HOH HOH . 
M 7 HOH B 58 958 89 HOH HOH . 
M 7 HOH B 59 959 90 HOH HOH . 
M 7 HOH B 60 960 91 HOH HOH . 
M 7 HOH B 61 961 92 HOH HOH . 
M 7 HOH B 62 962 94 HOH HOH . 
M 7 HOH B 63 963 97 HOH HOH . 
M 7 HOH B 64 964 99 HOH HOH . 
M 7 HOH B 65 965 102 HOH HOH . 
M 7 HOH B 66 966 104 HOH HOH . 
M 7 HOH B 67 967 105 HOH HOH . 
M 7 HOH B 68 968 109 HOH HOH . 
M 7 HOH B 69 969 111 HOH HOH . 
M 7 HOH B 70 970 114 HOH HOH . 
M 7 HOH B 71 971 115 HOH HOH . 
M 7 HOH B 72 972 119 HOH HOH . 
M 7 HOH B 73 973 121 HOH HOH . 
M 7 HOH B 74 974 126 HOH HOH . 
M 7 HOH B 75 975 127 HOH HOH . 
M 7 HOH B 76 976 128 HOH HOH . 
M 7 HOH B 77 977 129 HOH HOH . 
M 7 HOH B 78 978 130 HOH HOH . 
M 7 HOH B 79 979 144 HOH HOH . 
M 7 HOH B 80 980 148 HOH HOH . 
M 7 HOH B 81 981 150 HOH HOH . 
M 7 HOH B 82 982 151 HOH HOH . 
M 7 HOH B 83 983 152 HOH HOH . 
M 7 HOH B 84 984 153 HOH HOH . 
M 7 HOH B 85 985 154 HOH HOH . 
M 7 HOH B 86 986 155 HOH HOH . 
M 7 HOH B 87 987 156 HOH HOH . 
M 7 HOH B 88 988 157 HOH HOH . 
M 7 HOH B 89 989 158 HOH HOH . 
M 7 HOH B 90 990 159 HOH HOH . 
M 7 HOH B 91 991 160 HOH HOH . 
M 7 HOH B 92 992 161 HOH HOH . 
M 7 HOH B 93 993 162 HOH HOH . 
M 7 HOH B 94 994 163 HOH HOH . 
M 7 HOH B 95 995 164 HOH HOH . 
M 7 HOH B 96 996 165 HOH HOH . 
M 7 HOH B 97 997 166 HOH HOH . 
M 7 HOH B 98 998 167 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 H4B . . . D 3 9.967 2.452 33.983 1 50.55 ? N1 H4B 802 A 1 
HETATM 2 C C2 H4B . . . D 3 10.165 2.071 32.703 1 49.84 ? C2 H4B 802 A 1 
HETATM 3 N N2 H4B . . . D 3 11.427 1.97 32.187 1 48.67 ? N2 H4B 802 A 1 
HETATM 4 N N3 H4B . . . D 3 9.081 1.762 31.939 1 50.76 ? N3 H4B 802 A 1 
HETATM 5 C C4 H4B . . . D 3 7.816 1.846 32.4 1 49.26 ? C4 H4B 802 A 1 
HETATM 6 O O4 H4B . . . D 3 6.888 1.536 31.622 1 50.39 ? O4 H4B 802 A 1 
HETATM 7 C C4A H4B . . . D 3 7.6 2.249 33.711 1 47.77 ? C4A H4B 802 A 1 
HETATM 8 C C8A H4B . . . D 3 8.717 2.559 34.497 1 48.11 ? C8A H4B 802 A 1 
HETATM 9 N N5 H4B . . . D 3 6.362 2.343 34.252 1 46.91 ? N5 H4B 802 A 1 
HETATM 10 N N8 H4B . . . D 3 8.587 2.97 35.796 1 45.95 ? N8 H4B 802 A 1 
HETATM 11 C C6 H4B . . . D 3 6.22 3.299 35.361 1 50.86 ? C6 H4B 802 A 1 
HETATM 12 C C7 H4B . . . D 3 7.286 3.079 36.434 1 47.92 ? C7 H4B 802 A 1 
HETATM 13 C C9 H4B . . . D 3 4.805 3.391 35.957 1 53.55 ? C9 H4B 802 A 1 
HETATM 14 O O9 H4B . . . D 3 4.393 2.08 36.306 1 55.04 ? O9 H4B 802 A 1 
HETATM 15 C C10 H4B . . . D 3 4.704 4.256 37.215 1 53.51 ? C10 H4B 802 A 1 
HETATM 16 C C11 H4B . . . D 3 3.266 4.437 37.668 1 56.85 ? C11 H4B 802 A 1 
HETATM 17 O O10 H4B . . . D 3 5.252 5.534 36.948 1 56.74 ? O10 H4B 802 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           17 
#