data_4KCH # _model_server_result.job_id es-6U-2o2LaBluW7Dqm46A _model_server_result.datetime_utc '2024-11-09 01:59:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kch # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":804}' # _entry.id 4KCH # _exptl.entry_id 4KCH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.535 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N'-biphenyl-3,3'-diyldithiophene-2-carboximidamide" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KCH _cell.length_a 51.702 _cell.length_b 111.554 _cell.length_c 164.964 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KCH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc4 G ZN ZN . A ZN 805 1_555 B SG CYS 30 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc5 G ZN ZN . A ZN 805 1_555 B SG CYS 35 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 H FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? # _chem_comp.formula 'C22 H18 N4 S2' _chem_comp.formula_weight 402.535 _chem_comp.id H38 _chem_comp.mon_nstd_flag . _chem_comp.name "N,N'-biphenyl-3,3'-diyldithiophene-2-carboximidamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C03 C02 H38 doub 135 n y C03 C04 H38 sing 136 n y C02 S01 H38 sing 137 n y C04 C05 H38 doub 138 n y S01 C05 H38 sing 139 n y C05 C06 H38 sing 140 n n C06 N06 H38 doub 141 n n C06 N07 H38 sing 142 n n C12 C13 H38 doub 143 n y C12 C11 H38 sing 144 n y C13 C14 H38 sing 145 n y C11 N07 H38 sing 146 n n C11 C16 H38 doub 147 n y C14 C15 H38 doub 148 n y C34 C33 H38 doub 149 n y C34 C35 H38 sing 150 n y C16 C15 H38 sing 151 n y C15 C35 H38 sing 152 n n C33 C32 H38 sing 153 n y C35 C36 H38 doub 154 n y C32 C31 H38 doub 155 n y C36 C31 H38 sing 156 n y C31 N27 H38 sing 157 n n N27 C26 H38 sing 158 n n C26 C25 H38 sing 159 n n C26 N26 H38 doub 160 n n C25 C24 H38 doub 161 n y C25 S21 H38 sing 162 n y C24 C23 H38 sing 163 n y S21 C22 H38 sing 164 n y C23 C22 H38 doub 165 n y N26 H1 H38 sing 166 n n C22 H2 H38 sing 167 n n C23 H3 H38 sing 168 n n C24 H4 H38 sing 169 n n N27 H5 H38 sing 170 n n C36 H6 H38 sing 171 n n C32 H7 H38 sing 172 n n C33 H8 H38 sing 173 n n C34 H9 H38 sing 174 n n C14 H10 H38 sing 175 n n C13 H11 H38 sing 176 n n C12 H12 H38 sing 177 n n C16 H13 H38 sing 178 n n N07 H14 H38 sing 179 n n N06 H15 H38 sing 180 n n C02 H16 H38 sing 181 n n C03 H17 H38 sing 182 n n C04 H18 H38 sing 183 n n # _atom_sites.entry_id 4KCH _atom_sites.fract_transf_matrix[1][1] 0.019342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 801 750 HEM HEM . D 3 H4B A 1 802 760 H4B BH4 . E 4 ACT A 1 803 860 ACT ACT . F 5 H38 A 1 804 800 H38 H38 . G 6 ZN A 1 805 900 ZN ZN . H 2 HEM B 1 801 750 HEM HEM . I 3 H4B B 1 802 760 H4B BH4 . J 4 ACT B 1 803 860 ACT ACT . K 5 H38 B 1 804 800 H38 H38 . L 7 HOH A 1 901 2 HOH HOH . L 7 HOH A 2 902 5 HOH HOH . L 7 HOH A 3 903 8 HOH HOH . L 7 HOH A 4 904 9 HOH HOH . L 7 HOH A 5 905 13 HOH HOH . L 7 HOH A 6 906 15 HOH HOH . L 7 HOH A 7 907 16 HOH HOH . L 7 HOH A 8 908 19 HOH HOH . L 7 HOH A 9 909 25 HOH HOH . L 7 HOH A 10 910 27 HOH HOH . L 7 HOH A 11 911 29 HOH HOH . L 7 HOH A 12 912 34 HOH HOH . L 7 HOH A 13 913 36 HOH HOH . L 7 HOH A 14 914 37 HOH HOH . L 7 HOH A 15 915 39 HOH HOH . L 7 HOH A 16 916 43 HOH HOH . L 7 HOH A 17 917 47 HOH HOH . L 7 HOH A 18 918 49 HOH HOH . L 7 HOH A 19 919 52 HOH HOH . L 7 HOH A 20 920 55 HOH HOH . L 7 HOH A 21 921 57 HOH HOH . L 7 HOH A 22 922 60 HOH HOH . L 7 HOH A 23 923 61 HOH HOH . L 7 HOH A 24 924 62 HOH HOH . L 7 HOH A 25 925 63 HOH HOH . L 7 HOH A 26 926 67 HOH HOH . L 7 HOH A 27 927 72 HOH HOH . L 7 HOH A 28 928 73 HOH HOH . L 7 HOH A 29 929 76 HOH HOH . L 7 HOH A 30 930 83 HOH HOH . L 7 HOH A 31 931 86 HOH HOH . L 7 HOH A 32 932 93 HOH HOH . L 7 HOH A 33 933 95 HOH HOH . L 7 HOH A 34 934 96 HOH HOH . L 7 HOH A 35 935 98 HOH HOH . L 7 HOH A 36 936 100 HOH HOH . L 7 HOH A 37 937 101 HOH HOH . L 7 HOH A 38 938 103 HOH HOH . L 7 HOH A 39 939 106 HOH HOH . L 7 HOH A 40 940 107 HOH HOH . L 7 HOH A 41 941 108 HOH HOH . L 7 HOH A 42 942 110 HOH HOH . L 7 HOH A 43 943 112 HOH HOH . L 7 HOH A 44 944 113 HOH HOH . L 7 HOH A 45 945 116 HOH HOH . L 7 HOH A 46 946 117 HOH HOH . L 7 HOH A 47 947 118 HOH HOH . L 7 HOH A 48 948 120 HOH HOH . L 7 HOH A 49 949 122 HOH HOH . L 7 HOH A 50 950 123 HOH HOH . L 7 HOH A 51 951 124 HOH HOH . L 7 HOH A 52 952 125 HOH HOH . L 7 HOH A 53 953 131 HOH HOH . L 7 HOH A 54 954 132 HOH HOH . L 7 HOH A 55 955 133 HOH HOH . L 7 HOH A 56 956 134 HOH HOH . L 7 HOH A 57 957 135 HOH HOH . L 7 HOH A 58 958 136 HOH HOH . L 7 HOH A 59 959 137 HOH HOH . L 7 HOH A 60 960 138 HOH HOH . L 7 HOH A 61 961 139 HOH HOH . L 7 HOH A 62 962 140 HOH HOH . L 7 HOH A 63 963 141 HOH HOH . L 7 HOH A 64 964 142 HOH HOH . L 7 HOH A 65 965 143 HOH HOH . L 7 HOH A 66 966 145 HOH HOH . L 7 HOH A 67 967 146 HOH HOH . L 7 HOH A 68 968 147 HOH HOH . L 7 HOH A 69 969 149 HOH HOH . M 7 HOH B 1 901 1 HOH HOH . M 7 HOH B 2 902 3 HOH HOH . M 7 HOH B 3 903 4 HOH HOH . M 7 HOH B 4 904 6 HOH HOH . M 7 HOH B 5 905 7 HOH HOH . M 7 HOH B 6 906 10 HOH HOH . M 7 HOH B 7 907 11 HOH HOH . M 7 HOH B 8 908 12 HOH HOH . M 7 HOH B 9 909 14 HOH HOH . M 7 HOH B 10 910 17 HOH HOH . M 7 HOH B 11 911 18 HOH HOH . M 7 HOH B 12 912 20 HOH HOH . M 7 HOH B 13 913 21 HOH HOH . M 7 HOH B 14 914 22 HOH HOH . M 7 HOH B 15 915 23 HOH HOH . M 7 HOH B 16 916 24 HOH HOH . M 7 HOH B 17 917 26 HOH HOH . M 7 HOH B 18 918 28 HOH HOH . M 7 HOH B 19 919 30 HOH HOH . M 7 HOH B 20 920 31 HOH HOH . M 7 HOH B 21 921 32 HOH HOH . M 7 HOH B 22 922 33 HOH HOH . M 7 HOH B 23 923 35 HOH HOH . M 7 HOH B 24 924 38 HOH HOH . M 7 HOH B 25 925 40 HOH HOH . M 7 HOH B 26 926 41 HOH HOH . M 7 HOH B 27 927 42 HOH HOH . M 7 HOH B 28 928 44 HOH HOH . M 7 HOH B 29 929 45 HOH HOH . M 7 HOH B 30 930 46 HOH HOH . M 7 HOH B 31 931 48 HOH HOH . M 7 HOH B 32 932 50 HOH HOH . M 7 HOH B 33 933 51 HOH HOH . M 7 HOH B 34 934 53 HOH HOH . M 7 HOH B 35 935 54 HOH HOH . M 7 HOH B 36 936 56 HOH HOH . M 7 HOH B 37 937 58 HOH HOH . M 7 HOH B 38 938 59 HOH HOH . M 7 HOH B 39 939 64 HOH HOH . M 7 HOH B 40 940 65 HOH HOH . M 7 HOH B 41 941 66 HOH HOH . M 7 HOH B 42 942 68 HOH HOH . M 7 HOH B 43 943 69 HOH HOH . M 7 HOH B 44 944 70 HOH HOH . M 7 HOH B 45 945 71 HOH HOH . M 7 HOH B 46 946 74 HOH HOH . M 7 HOH B 47 947 75 HOH HOH . M 7 HOH B 48 948 77 HOH HOH . M 7 HOH B 49 949 78 HOH HOH . M 7 HOH B 50 950 79 HOH HOH . M 7 HOH B 51 951 80 HOH HOH . M 7 HOH B 52 952 81 HOH HOH . M 7 HOH B 53 953 82 HOH HOH . M 7 HOH B 54 954 84 HOH HOH . M 7 HOH B 55 955 85 HOH HOH . M 7 HOH B 56 956 87 HOH HOH . M 7 HOH B 57 957 88 HOH HOH . M 7 HOH B 58 958 89 HOH HOH . M 7 HOH B 59 959 90 HOH HOH . M 7 HOH B 60 960 91 HOH HOH . M 7 HOH B 61 961 92 HOH HOH . M 7 HOH B 62 962 94 HOH HOH . M 7 HOH B 63 963 97 HOH HOH . M 7 HOH B 64 964 99 HOH HOH . M 7 HOH B 65 965 102 HOH HOH . M 7 HOH B 66 966 104 HOH HOH . M 7 HOH B 67 967 105 HOH HOH . M 7 HOH B 68 968 109 HOH HOH . M 7 HOH B 69 969 111 HOH HOH . M 7 HOH B 70 970 114 HOH HOH . M 7 HOH B 71 971 115 HOH HOH . M 7 HOH B 72 972 119 HOH HOH . M 7 HOH B 73 973 121 HOH HOH . M 7 HOH B 74 974 126 HOH HOH . M 7 HOH B 75 975 127 HOH HOH . M 7 HOH B 76 976 128 HOH HOH . M 7 HOH B 77 977 129 HOH HOH . M 7 HOH B 78 978 130 HOH HOH . M 7 HOH B 79 979 144 HOH HOH . M 7 HOH B 80 980 148 HOH HOH . M 7 HOH B 81 981 150 HOH HOH . M 7 HOH B 82 982 151 HOH HOH . M 7 HOH B 83 983 152 HOH HOH . M 7 HOH B 84 984 153 HOH HOH . M 7 HOH B 85 985 154 HOH HOH . M 7 HOH B 86 986 155 HOH HOH . M 7 HOH B 87 987 156 HOH HOH . M 7 HOH B 88 988 157 HOH HOH . M 7 HOH B 89 989 158 HOH HOH . M 7 HOH B 90 990 159 HOH HOH . M 7 HOH B 91 991 160 HOH HOH . M 7 HOH B 92 992 161 HOH HOH . M 7 HOH B 93 993 162 HOH HOH . M 7 HOH B 94 994 163 HOH HOH . M 7 HOH B 95 995 164 HOH HOH . M 7 HOH B 96 996 165 HOH HOH . M 7 HOH B 97 997 166 HOH HOH . M 7 HOH B 98 998 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N26 H38 . . . F 5 4.658 2.331 28.48 1 59.49 ? N26 H38 804 A 1 HETATM 2 C C26 H38 . . . F 5 4.573 3.448 27.754 1 63.57 ? C26 H38 804 A 1 HETATM 3 C C25 H38 . . . F 5 3.765 4.602 28.246 1 68.84 ? C25 H38 804 A 1 HETATM 4 S S21 H38 . . . F 5 2.12 4.29 28.681 1 76.54 ? S21 H38 804 A 1 HETATM 5 C C22 H38 . . . F 5 1.773 5.925 29.15 1 70.56 ? C22 H38 804 A 1 HETATM 6 C C23 H38 . . . F 5 2.946 6.66 28.963 1 72.7 ? C23 H38 804 A 1 HETATM 7 C C24 H38 . . . F 5 4.048 5.949 28.463 1 70.78 ? C24 H38 804 A 1 HETATM 8 N N27 H38 . . . F 5 5.208 3.593 26.592 1 55.78 ? N27 H38 804 A 1 HETATM 9 C C31 H38 . . . F 5 5.918 2.654 25.918 1 48.96 ? C31 H38 804 A 1 HETATM 10 C C36 H38 . . . F 5 7.273 2.898 25.638 1 42.71 ? C36 H38 804 A 1 HETATM 11 C C32 H38 . . . F 5 5.304 1.485 25.457 1 46.86 ? C32 H38 804 A 1 HETATM 12 C C33 H38 . . . F 5 6.038 0.535 24.745 1 44.55 ? C33 H38 804 A 1 HETATM 13 C C34 H38 . . . F 5 7.387 0.775 24.479 1 41.67 ? C34 H38 804 A 1 HETATM 14 C C35 H38 . . . F 5 8 1.949 24.917 1 39.2 ? C35 H38 804 A 1 HETATM 15 C C15 H38 . . . F 5 9.437 2.178 24.622 1 34.08 ? C15 H38 804 A 1 HETATM 16 C C14 H38 . . . F 5 9.871 3.479 24.369 1 30.25 ? C14 H38 804 A 1 HETATM 17 C C13 H38 . . . F 5 11.219 3.682 24.079 1 31.59 ? C13 H38 804 A 1 HETATM 18 C C12 H38 . . . F 5 12.107 2.602 24.069 1 29.4 ? C12 H38 804 A 1 HETATM 19 C C16 H38 . . . F 5 10.312 1.097 24.604 1 28.92 ? C16 H38 804 A 1 HETATM 20 C C11 H38 . . . F 5 11.668 1.3 24.341 1 30.75 ? C11 H38 804 A 1 HETATM 21 N N07 H38 . . . F 5 12.541 0.236 24.347 1 29.96 ? N07 H38 804 A 1 HETATM 22 C C06 H38 . . . F 5 13.564 0.126 23.496 1 29.92 ? C06 H38 804 A 1 HETATM 23 N N06 H38 . . . F 5 14.627 -0.624 23.757 1 26.52 ? N06 H38 804 A 1 HETATM 24 C C05 H38 . . . F 5 13.48 0.902 22.231 1 28.66 ? C05 H38 804 A 1 HETATM 25 S S01 H38 . . . F 5 14.985 1.565 21.774 1 33.67 ? S01 H38 804 A 1 HETATM 26 C C02 H38 . . . F 5 14.374 2.379 20.363 1 27.11 ? C02 H38 804 A 1 HETATM 27 C C03 H38 . . . F 5 13.009 2.089 20.354 1 26.22 ? C03 H38 804 A 1 HETATM 28 C C04 H38 . . . F 5 12.479 1.289 21.363 1 22.63 ? C04 H38 804 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #