data_4KCI # _model_server_result.job_id lkhl1_jK_fHqN8yD-Tgo3w _model_server_result.datetime_utc '2024-11-23 05:23:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kci # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":801}' # _entry.id 4KCI # _exptl.entry_id 4KCI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KCI _cell.length_a 51.819 _cell.length_b 111.887 _cell.length_c 164.961 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KCI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc4 G ZN ZN . A ZN 805 1_555 B SG CYS 30 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc5 G ZN ZN . A ZN 805 1_555 B SG CYS 35 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 H FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 223 n n CHA C4D HEM doub 224 n n CHA HHA HEM sing 225 n n CHB C4A HEM sing 226 n n CHB C1B HEM doub 227 n n CHB HHB HEM sing 228 n n CHC C4B HEM sing 229 n n CHC C1C HEM doub 230 n n CHC HHC HEM sing 231 n n CHD C4C HEM doub 232 n n CHD C1D HEM sing 233 n n CHD HHD HEM sing 234 n n C1A C2A HEM doub 235 n y C1A NA HEM sing 236 n y C2A C3A HEM sing 237 n y C2A CAA HEM sing 238 n n C3A C4A HEM doub 239 n y C3A CMA HEM sing 240 n n C4A NA HEM sing 241 n y CMA HMA HEM sing 242 n n CMA HMAA HEM sing 243 n n CMA HMAB HEM sing 244 n n CAA CBA HEM sing 245 n n CAA HAA HEM sing 246 n n CAA HAAA HEM sing 247 n n CBA CGA HEM sing 248 n n CBA HBA HEM sing 249 n n CBA HBAA HEM sing 250 n n CGA O1A HEM doub 251 n n CGA O2A HEM sing 252 n n C1B C2B HEM sing 253 n n C1B NB HEM sing 254 n n C2B C3B HEM doub 255 n n C2B CMB HEM sing 256 n n C3B C4B HEM sing 257 n n C3B CAB HEM sing 258 n n C4B NB HEM doub 259 n n CMB HMB HEM sing 260 n n CMB HMBA HEM sing 261 n n CMB HMBB HEM sing 262 n n CAB CBB HEM doub 263 n n CAB HAB HEM sing 264 n n CBB HBB HEM sing 265 n n CBB HBBA HEM sing 266 n n C1C C2C HEM sing 267 n y C1C NC HEM sing 268 n y C2C C3C HEM doub 269 n y C2C CMC HEM sing 270 n n C3C C4C HEM sing 271 n y C3C CAC HEM sing 272 n n C4C NC HEM sing 273 n y CMC HMC HEM sing 274 n n CMC HMCA HEM sing 275 n n CMC HMCB HEM sing 276 n n CAC CBC HEM doub 277 n n CAC HAC HEM sing 278 n n CBC HBC HEM sing 279 n n CBC HBCA HEM sing 280 n n C1D C2D HEM sing 281 n n C1D ND HEM doub 282 n n C2D C3D HEM doub 283 n n C2D CMD HEM sing 284 n n C3D C4D HEM sing 285 n n C3D CAD HEM sing 286 n n C4D ND HEM sing 287 n n CMD HMD HEM sing 288 n n CMD HMDA HEM sing 289 n n CMD HMDB HEM sing 290 n n CAD CBD HEM sing 291 n n CAD HAD HEM sing 292 n n CAD HADA HEM sing 293 n n CBD CGD HEM sing 294 n n CBD HBD HEM sing 295 n n CBD HBDA HEM sing 296 n n CGD O1D HEM doub 297 n n CGD O2D HEM sing 298 n n O2A H2A HEM sing 299 n n O2D H2D HEM sing 300 n n FE NA HEM sing 301 n n FE NB HEM sing 302 n n FE NC HEM sing 303 n n FE ND HEM sing 304 n n # _atom_sites.entry_id 4KCI _atom_sites.fract_transf_matrix[1][1] 0.019298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 801 750 HEM HEM . D 3 H4B A 1 802 760 H4B BH4 . E 4 ACT A 1 803 860 ACT ACT . F 5 1QE A 1 804 800 1QE 3H9 . G 6 ZN A 1 805 900 ZN ZN . H 2 HEM B 1 801 750 HEM HEM . I 3 H4B B 1 802 760 H4B BH4 . J 5 1QE B 1 803 800 1QE 3H9 . K 4 ACT B 1 804 860 ACT ACT . L 7 HOH A 1 901 1 HOH HOH . L 7 HOH A 2 902 3 HOH HOH . L 7 HOH A 3 903 7 HOH HOH . L 7 HOH A 4 904 11 HOH HOH . L 7 HOH A 5 905 12 HOH HOH . L 7 HOH A 6 906 17 HOH HOH . L 7 HOH A 7 907 22 HOH HOH . L 7 HOH A 8 908 24 HOH HOH . L 7 HOH A 9 909 28 HOH HOH . L 7 HOH A 10 910 30 HOH HOH . L 7 HOH A 11 911 31 HOH HOH . L 7 HOH A 12 912 32 HOH HOH . L 7 HOH A 13 913 36 HOH HOH . L 7 HOH A 14 914 41 HOH HOH . L 7 HOH A 15 915 47 HOH HOH . L 7 HOH A 16 916 50 HOH HOH . L 7 HOH A 17 917 52 HOH HOH . L 7 HOH A 18 918 53 HOH HOH . L 7 HOH A 19 919 58 HOH HOH . L 7 HOH A 20 920 65 HOH HOH . L 7 HOH A 21 921 66 HOH HOH . L 7 HOH A 22 922 67 HOH HOH . L 7 HOH A 23 923 68 HOH HOH . L 7 HOH A 24 924 69 HOH HOH . L 7 HOH A 25 925 70 HOH HOH . L 7 HOH A 26 926 71 HOH HOH . L 7 HOH A 27 927 72 HOH HOH . L 7 HOH A 28 928 73 HOH HOH . L 7 HOH A 29 929 74 HOH HOH . L 7 HOH A 30 930 75 HOH HOH . L 7 HOH A 31 931 76 HOH HOH . L 7 HOH A 32 932 77 HOH HOH . L 7 HOH A 33 933 78 HOH HOH . L 7 HOH A 34 934 79 HOH HOH . L 7 HOH A 35 935 80 HOH HOH . L 7 HOH A 36 936 81 HOH HOH . L 7 HOH A 37 937 82 HOH HOH . L 7 HOH A 38 938 115 HOH HOH . L 7 HOH A 39 939 116 HOH HOH . L 7 HOH A 40 940 117 HOH HOH . L 7 HOH A 41 941 120 HOH HOH . M 7 HOH B 1 901 2 HOH HOH . M 7 HOH B 2 902 4 HOH HOH . M 7 HOH B 3 903 5 HOH HOH . M 7 HOH B 4 904 6 HOH HOH . M 7 HOH B 5 905 8 HOH HOH . M 7 HOH B 6 906 9 HOH HOH . M 7 HOH B 7 907 10 HOH HOH . M 7 HOH B 8 908 13 HOH HOH . M 7 HOH B 9 909 14 HOH HOH . M 7 HOH B 10 910 15 HOH HOH . M 7 HOH B 11 911 16 HOH HOH . M 7 HOH B 12 912 18 HOH HOH . M 7 HOH B 13 913 19 HOH HOH . M 7 HOH B 14 914 20 HOH HOH . M 7 HOH B 15 915 21 HOH HOH . M 7 HOH B 16 916 23 HOH HOH . M 7 HOH B 17 917 25 HOH HOH . M 7 HOH B 18 918 26 HOH HOH . M 7 HOH B 19 919 27 HOH HOH . M 7 HOH B 20 920 29 HOH HOH . M 7 HOH B 21 921 33 HOH HOH . M 7 HOH B 22 922 34 HOH HOH . M 7 HOH B 23 923 35 HOH HOH . M 7 HOH B 24 924 37 HOH HOH . M 7 HOH B 25 925 38 HOH HOH . M 7 HOH B 26 926 39 HOH HOH . M 7 HOH B 27 927 40 HOH HOH . M 7 HOH B 28 928 42 HOH HOH . M 7 HOH B 29 929 43 HOH HOH . M 7 HOH B 30 930 44 HOH HOH . M 7 HOH B 31 931 45 HOH HOH . M 7 HOH B 32 932 46 HOH HOH . M 7 HOH B 33 933 48 HOH HOH . M 7 HOH B 34 934 49 HOH HOH . M 7 HOH B 35 935 51 HOH HOH . M 7 HOH B 36 936 54 HOH HOH . M 7 HOH B 37 937 55 HOH HOH . M 7 HOH B 38 938 56 HOH HOH . M 7 HOH B 39 939 57 HOH HOH . M 7 HOH B 40 940 59 HOH HOH . M 7 HOH B 41 941 60 HOH HOH . M 7 HOH B 42 942 61 HOH HOH . M 7 HOH B 43 943 62 HOH HOH . M 7 HOH B 44 944 63 HOH HOH . M 7 HOH B 45 945 64 HOH HOH . M 7 HOH B 46 946 83 HOH HOH . M 7 HOH B 47 947 84 HOH HOH . M 7 HOH B 48 948 85 HOH HOH . M 7 HOH B 49 949 86 HOH HOH . M 7 HOH B 50 950 87 HOH HOH . M 7 HOH B 51 951 88 HOH HOH . M 7 HOH B 52 952 89 HOH HOH . M 7 HOH B 53 953 90 HOH HOH . M 7 HOH B 54 954 91 HOH HOH . M 7 HOH B 55 955 92 HOH HOH . M 7 HOH B 56 956 93 HOH HOH . M 7 HOH B 57 957 94 HOH HOH . M 7 HOH B 58 958 95 HOH HOH . M 7 HOH B 59 959 96 HOH HOH . M 7 HOH B 60 960 97 HOH HOH . M 7 HOH B 61 961 98 HOH HOH . M 7 HOH B 62 962 99 HOH HOH . M 7 HOH B 63 963 100 HOH HOH . M 7 HOH B 64 964 101 HOH HOH . M 7 HOH B 65 965 102 HOH HOH . M 7 HOH B 66 966 103 HOH HOH . M 7 HOH B 67 967 104 HOH HOH . M 7 HOH B 68 968 105 HOH HOH . M 7 HOH B 69 969 106 HOH HOH . M 7 HOH B 70 970 107 HOH HOH . M 7 HOH B 71 971 108 HOH HOH . M 7 HOH B 72 972 109 HOH HOH . M 7 HOH B 73 973 110 HOH HOH . M 7 HOH B 74 974 111 HOH HOH . M 7 HOH B 75 975 112 HOH HOH . M 7 HOH B 76 976 113 HOH HOH . M 7 HOH B 77 977 114 HOH HOH . M 7 HOH B 78 978 118 HOH HOH . M 7 HOH B 79 979 119 HOH HOH . M 7 HOH B 80 980 121 HOH HOH . M 7 HOH B 81 981 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . H 2 10.48 3.951 55.749 1 35 ? CHA HEM 801 B 1 HETATM 2 C CHB HEM . . . H 2 8.458 -0.571 56.395 1 37.66 ? CHB HEM 801 B 1 HETATM 3 C CHC HEM . . . H 2 6.785 0.826 60.669 1 35.03 ? CHC HEM 801 B 1 HETATM 4 C CHD HEM . . . H 2 8.205 5.527 59.647 1 35.12 ? CHD HEM 801 B 1 HETATM 5 C C1A HEM . . . H 2 10.215 2.547 55.627 1 35.89 ? C1A HEM 801 B 1 HETATM 6 C C2A HEM . . . H 2 10.901 1.668 54.659 1 40.51 ? C2A HEM 801 B 1 HETATM 7 C C3A HEM . . . H 2 10.32 0.335 54.86 1 36.02 ? C3A HEM 801 B 1 HETATM 8 C C4A HEM . . . H 2 9.275 0.529 55.89 1 38.56 ? C4A HEM 801 B 1 HETATM 9 C CMA HEM . . . H 2 10.624 -0.926 54.121 1 37.07 ? CMA HEM 801 B 1 HETATM 10 C CAA HEM . . . H 2 12.015 2.061 53.704 1 41.89 ? CAA HEM 801 B 1 HETATM 11 C CBA HEM . . . H 2 13.302 1.928 54.56 1 40.79 ? CBA HEM 801 B 1 HETATM 12 C CGA HEM . . . H 2 14.584 1.961 53.72 1 48.41 ? CGA HEM 801 B 1 HETATM 13 O O1A HEM . . . H 2 14.574 1.986 52.503 1 48.01 ? O1A HEM 801 B 1 HETATM 14 O O2A HEM . . . H 2 15.694 1.98 54.247 1 53.17 ? O2A HEM 801 B 1 HETATM 15 C C1B HEM . . . H 2 7.82 -0.541 57.656 1 36.48 ? C1B HEM 801 B 1 HETATM 16 C C2B HEM . . . H 2 7.367 -1.862 58.198 1 38.91 ? C2B HEM 801 B 1 HETATM 17 C C3B HEM . . . H 2 6.922 -1.417 59.492 1 37.35 ? C3B HEM 801 B 1 HETATM 18 C C4B HEM . . . H 2 7.092 0.051 59.488 1 38.35 ? C4B HEM 801 B 1 HETATM 19 C CMB HEM . . . H 2 7.44 -3.224 57.56 1 36.34 ? CMB HEM 801 B 1 HETATM 20 C CAB HEM . . . H 2 6.255 -2.282 60.443 1 45.04 ? CAB HEM 801 B 1 HETATM 21 C CBB HEM . . . H 2 5.357 -1.837 61.288 1 43.52 ? CBB HEM 801 B 1 HETATM 22 C C1C HEM . . . H 2 7.085 2.211 60.801 1 35.24 ? C1C HEM 801 B 1 HETATM 23 C C2C HEM . . . H 2 6.815 2.894 62.054 1 37.97 ? C2C HEM 801 B 1 HETATM 24 C C3C HEM . . . H 2 7.223 4.269 61.728 1 36.23 ? C3C HEM 801 B 1 HETATM 25 C C4C HEM . . . H 2 7.698 4.325 60.325 1 36.54 ? C4C HEM 801 B 1 HETATM 26 C CMC HEM . . . H 2 6.234 2.295 63.311 1 35.07 ? CMC HEM 801 B 1 HETATM 27 C CAC HEM . . . H 2 7.111 5.454 62.585 1 38.07 ? CAC HEM 801 B 1 HETATM 28 C CBC HEM . . . H 2 6.336 5.439 63.658 1 42.18 ? CBC HEM 801 B 1 HETATM 29 C C1D HEM . . . H 2 8.943 5.476 58.427 1 36.08 ? C1D HEM 801 B 1 HETATM 30 C C2D HEM . . . H 2 9.716 6.702 58.047 1 37.74 ? C2D HEM 801 B 1 HETATM 31 C C3D HEM . . . H 2 10.411 6.204 56.865 1 36.04 ? C3D HEM 801 B 1 HETATM 32 C C4D HEM . . . H 2 9.942 4.803 56.775 1 35.86 ? C4D HEM 801 B 1 HETATM 33 C CMD HEM . . . H 2 9.756 8.079 58.708 1 34.32 ? CMD HEM 801 B 1 HETATM 34 C CAD HEM . . . H 2 11.331 6.961 55.939 1 36.5 ? CAD HEM 801 B 1 HETATM 35 C CBD HEM . . . H 2 12.715 7.136 56.468 1 36.18 ? CBD HEM 801 B 1 HETATM 36 C CGD HEM . . . H 2 13.517 8.041 55.601 1 40.52 ? CGD HEM 801 B 1 HETATM 37 O O1D HEM . . . H 2 14.743 7.831 55.652 1 47.11 ? O1D HEM 801 B 1 HETATM 38 O O2D HEM . . . H 2 12.972 8.928 54.903 1 47.23 ? O2D HEM 801 B 1 HETATM 39 N NA HEM . . . H 2 9.268 1.844 56.451 1 36.48 ? NA HEM 801 B 1 HETATM 40 N NB HEM . . . H 2 7.75 0.56 58.408 1 34.77 ? NB HEM 801 B 1 HETATM 41 N NC HEM . . . H 2 7.725 3.009 59.79 1 38.33 ? NC HEM 801 B 1 HETATM 42 N ND HEM . . . H 2 9.113 4.354 57.716 1 33.7 ? ND HEM 801 B 1 HETATM 43 FE FE HEM . . . H 2 8.156 2.527 57.932 1 35.26 ? FE HEM 801 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #