data_4KCI # _model_server_result.job_id -Y6z6re1zfSQudrARB2PiA _model_server_result.datetime_utc '2024-11-04 23:14:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kci # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 4KCI # _exptl.entry_id 4KCI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KCI _cell.length_a 51.819 _cell.length_b 111.887 _cell.length_c 164.961 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KCI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc4 G ZN ZN . A ZN 805 1_555 B SG CYS 30 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc5 G ZN ZN . A ZN 805 1_555 B SG CYS 35 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 H FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 190 n y N1 C8A H4B sing 191 n y C2 N2 H4B sing 192 n n C2 N3 H4B sing 193 n y N2 HN21 H4B sing 194 n n N2 HN22 H4B sing 195 n n N3 C4 H4B sing 196 n y N3 HN3 H4B sing 197 n n C4 O4 H4B doub 198 n n C4 C4A H4B sing 199 n y C4A C8A H4B doub 200 n y C4A N5 H4B sing 201 n n C8A N8 H4B sing 202 n n N5 C6 H4B sing 203 n n N5 HN5 H4B sing 204 n n N8 C7 H4B sing 205 n n N8 HN8 H4B sing 206 n n C6 C7 H4B sing 207 n n C6 C9 H4B sing 208 n n C6 H6 H4B sing 209 n n C7 H71 H4B sing 210 n n C7 H72 H4B sing 211 n n C9 O9 H4B sing 212 n n C9 C10 H4B sing 213 n n C9 H9 H4B sing 214 n n O9 HO9 H4B sing 215 n n C10 C11 H4B sing 216 n n C10 O10 H4B sing 217 n n C10 H10 H4B sing 218 n n C11 H111 H4B sing 219 n n C11 H112 H4B sing 220 n n C11 H113 H4B sing 221 n n O10 HO0 H4B sing 222 n n # _atom_sites.entry_id 4KCI _atom_sites.fract_transf_matrix[1][1] 0.019298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 801 750 HEM HEM . D 3 H4B A 1 802 760 H4B BH4 . E 4 ACT A 1 803 860 ACT ACT . F 5 1QE A 1 804 800 1QE 3H9 . G 6 ZN A 1 805 900 ZN ZN . H 2 HEM B 1 801 750 HEM HEM . I 3 H4B B 1 802 760 H4B BH4 . J 5 1QE B 1 803 800 1QE 3H9 . K 4 ACT B 1 804 860 ACT ACT . L 7 HOH A 1 901 1 HOH HOH . L 7 HOH A 2 902 3 HOH HOH . L 7 HOH A 3 903 7 HOH HOH . L 7 HOH A 4 904 11 HOH HOH . L 7 HOH A 5 905 12 HOH HOH . L 7 HOH A 6 906 17 HOH HOH . L 7 HOH A 7 907 22 HOH HOH . L 7 HOH A 8 908 24 HOH HOH . L 7 HOH A 9 909 28 HOH HOH . L 7 HOH A 10 910 30 HOH HOH . L 7 HOH A 11 911 31 HOH HOH . L 7 HOH A 12 912 32 HOH HOH . L 7 HOH A 13 913 36 HOH HOH . L 7 HOH A 14 914 41 HOH HOH . L 7 HOH A 15 915 47 HOH HOH . L 7 HOH A 16 916 50 HOH HOH . L 7 HOH A 17 917 52 HOH HOH . L 7 HOH A 18 918 53 HOH HOH . L 7 HOH A 19 919 58 HOH HOH . L 7 HOH A 20 920 65 HOH HOH . L 7 HOH A 21 921 66 HOH HOH . L 7 HOH A 22 922 67 HOH HOH . L 7 HOH A 23 923 68 HOH HOH . L 7 HOH A 24 924 69 HOH HOH . L 7 HOH A 25 925 70 HOH HOH . L 7 HOH A 26 926 71 HOH HOH . L 7 HOH A 27 927 72 HOH HOH . L 7 HOH A 28 928 73 HOH HOH . L 7 HOH A 29 929 74 HOH HOH . L 7 HOH A 30 930 75 HOH HOH . L 7 HOH A 31 931 76 HOH HOH . L 7 HOH A 32 932 77 HOH HOH . L 7 HOH A 33 933 78 HOH HOH . L 7 HOH A 34 934 79 HOH HOH . L 7 HOH A 35 935 80 HOH HOH . L 7 HOH A 36 936 81 HOH HOH . L 7 HOH A 37 937 82 HOH HOH . L 7 HOH A 38 938 115 HOH HOH . L 7 HOH A 39 939 116 HOH HOH . L 7 HOH A 40 940 117 HOH HOH . L 7 HOH A 41 941 120 HOH HOH . M 7 HOH B 1 901 2 HOH HOH . M 7 HOH B 2 902 4 HOH HOH . M 7 HOH B 3 903 5 HOH HOH . M 7 HOH B 4 904 6 HOH HOH . M 7 HOH B 5 905 8 HOH HOH . M 7 HOH B 6 906 9 HOH HOH . M 7 HOH B 7 907 10 HOH HOH . M 7 HOH B 8 908 13 HOH HOH . M 7 HOH B 9 909 14 HOH HOH . M 7 HOH B 10 910 15 HOH HOH . M 7 HOH B 11 911 16 HOH HOH . M 7 HOH B 12 912 18 HOH HOH . M 7 HOH B 13 913 19 HOH HOH . M 7 HOH B 14 914 20 HOH HOH . M 7 HOH B 15 915 21 HOH HOH . M 7 HOH B 16 916 23 HOH HOH . M 7 HOH B 17 917 25 HOH HOH . M 7 HOH B 18 918 26 HOH HOH . M 7 HOH B 19 919 27 HOH HOH . M 7 HOH B 20 920 29 HOH HOH . M 7 HOH B 21 921 33 HOH HOH . M 7 HOH B 22 922 34 HOH HOH . M 7 HOH B 23 923 35 HOH HOH . M 7 HOH B 24 924 37 HOH HOH . M 7 HOH B 25 925 38 HOH HOH . M 7 HOH B 26 926 39 HOH HOH . M 7 HOH B 27 927 40 HOH HOH . M 7 HOH B 28 928 42 HOH HOH . M 7 HOH B 29 929 43 HOH HOH . M 7 HOH B 30 930 44 HOH HOH . M 7 HOH B 31 931 45 HOH HOH . M 7 HOH B 32 932 46 HOH HOH . M 7 HOH B 33 933 48 HOH HOH . M 7 HOH B 34 934 49 HOH HOH . M 7 HOH B 35 935 51 HOH HOH . M 7 HOH B 36 936 54 HOH HOH . M 7 HOH B 37 937 55 HOH HOH . M 7 HOH B 38 938 56 HOH HOH . M 7 HOH B 39 939 57 HOH HOH . M 7 HOH B 40 940 59 HOH HOH . M 7 HOH B 41 941 60 HOH HOH . M 7 HOH B 42 942 61 HOH HOH . M 7 HOH B 43 943 62 HOH HOH . M 7 HOH B 44 944 63 HOH HOH . M 7 HOH B 45 945 64 HOH HOH . M 7 HOH B 46 946 83 HOH HOH . M 7 HOH B 47 947 84 HOH HOH . M 7 HOH B 48 948 85 HOH HOH . M 7 HOH B 49 949 86 HOH HOH . M 7 HOH B 50 950 87 HOH HOH . M 7 HOH B 51 951 88 HOH HOH . M 7 HOH B 52 952 89 HOH HOH . M 7 HOH B 53 953 90 HOH HOH . M 7 HOH B 54 954 91 HOH HOH . M 7 HOH B 55 955 92 HOH HOH . M 7 HOH B 56 956 93 HOH HOH . M 7 HOH B 57 957 94 HOH HOH . M 7 HOH B 58 958 95 HOH HOH . M 7 HOH B 59 959 96 HOH HOH . M 7 HOH B 60 960 97 HOH HOH . M 7 HOH B 61 961 98 HOH HOH . M 7 HOH B 62 962 99 HOH HOH . M 7 HOH B 63 963 100 HOH HOH . M 7 HOH B 64 964 101 HOH HOH . M 7 HOH B 65 965 102 HOH HOH . M 7 HOH B 66 966 103 HOH HOH . M 7 HOH B 67 967 104 HOH HOH . M 7 HOH B 68 968 105 HOH HOH . M 7 HOH B 69 969 106 HOH HOH . M 7 HOH B 70 970 107 HOH HOH . M 7 HOH B 71 971 108 HOH HOH . M 7 HOH B 72 972 109 HOH HOH . M 7 HOH B 73 973 110 HOH HOH . M 7 HOH B 74 974 111 HOH HOH . M 7 HOH B 75 975 112 HOH HOH . M 7 HOH B 76 976 113 HOH HOH . M 7 HOH B 77 977 114 HOH HOH . M 7 HOH B 78 978 118 HOH HOH . M 7 HOH B 79 979 119 HOH HOH . M 7 HOH B 80 980 121 HOH HOH . M 7 HOH B 81 981 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . D 3 9.773 2.446 33.95 1 44.53 ? N1 H4B 802 A 1 HETATM 2 C C2 H4B . . . D 3 9.949 2.072 32.657 1 47.15 ? C2 H4B 802 A 1 HETATM 3 N N2 H4B . . . D 3 11.236 1.967 32.183 1 46.38 ? N2 H4B 802 A 1 HETATM 4 N N3 H4B . . . D 3 8.858 1.792 31.884 1 43.15 ? N3 H4B 802 A 1 HETATM 5 C C4 H4B . . . D 3 7.628 1.878 32.395 1 44.06 ? C4 H4B 802 A 1 HETATM 6 O O4 H4B . . . D 3 6.646 1.605 31.674 1 44.78 ? O4 H4B 802 A 1 HETATM 7 C C4A H4B . . . D 3 7.452 2.286 33.721 1 44.3 ? C4A H4B 802 A 1 HETATM 8 C C8A H4B . . . D 3 8.582 2.578 34.492 1 42.49 ? C8A H4B 802 A 1 HETATM 9 N N5 H4B . . . D 3 6.215 2.37 34.274 1 40.42 ? N5 H4B 802 A 1 HETATM 10 N N8 H4B . . . D 3 8.514 2.963 35.793 1 41.45 ? N8 H4B 802 A 1 HETATM 11 C C6 H4B . . . D 3 6.094 3.305 35.372 1 46.17 ? C6 H4B 802 A 1 HETATM 12 C C7 H4B . . . D 3 7.194 3.055 36.429 1 40.79 ? C7 H4B 802 A 1 HETATM 13 C C9 H4B . . . D 3 4.676 3.282 35.96 1 47.07 ? C9 H4B 802 A 1 HETATM 14 O O9 H4B . . . D 3 4.483 1.948 36.4 1 46.37 ? O9 H4B 802 A 1 HETATM 15 C C10 H4B . . . D 3 4.49 4.132 37.202 1 48.12 ? C10 H4B 802 A 1 HETATM 16 C C11 H4B . . . D 3 3.031 4.306 37.583 1 50.07 ? C11 H4B 802 A 1 HETATM 17 O O10 H4B . . . D 3 5.091 5.389 37.019 1 50.57 ? O10 H4B 802 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #