data_4KCI # _model_server_result.job_id d3yvjy_cHsxdIJkxIebFCg _model_server_result.datetime_utc '2024-11-04 23:17:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kci # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":804}' # _entry.id 4KCI # _exptl.entry_id 4KCI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.588 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N'-(ethane-1,2-diyldibenzene-3,1-diyl)dithiophene-2-carboximidamide" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KCI _cell.length_a 51.819 _cell.length_b 111.887 _cell.length_c 164.961 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KCI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc4 G ZN ZN . A ZN 805 1_555 B SG CYS 30 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc5 G ZN ZN . A ZN 805 1_555 B SG CYS 35 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 H FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? # _chem_comp.formula 'C24 H22 N4 S2' _chem_comp.formula_weight 430.588 _chem_comp.id 1QE _chem_comp.mon_nstd_flag . _chem_comp.name "N,N'-(ethane-1,2-diyldibenzene-3,1-diyl)dithiophene-2-carboximidamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C03 C02 1QE doub 1 n y C03 C04 1QE sing 2 n y C02 S01 1QE sing 3 n y C04 C05 1QE doub 4 n y S01 C05 1QE sing 5 n y C05 C06 1QE sing 6 n n C06 N08 1QE doub 7 n n C06 N07 1QE sing 8 n n C13 C12 1QE doub 9 n y C13 C14 1QE sing 10 n y C12 C11 1QE sing 11 n y C14 C15 1QE doub 12 n y N07 C11 1QE sing 13 n n C11 C16 1QE doub 14 n y C15 C16 1QE sing 15 n y C15 C17 1QE sing 16 n n C17 C37 1QE sing 17 n n C37 C35 1QE sing 18 n n C34 C35 1QE doub 19 n y C34 C33 1QE sing 20 n y C35 C36 1QE sing 21 n y C33 C32 1QE doub 22 n y C36 C31 1QE doub 23 n y C32 C31 1QE sing 24 n y C31 N27 1QE sing 25 n n S21 C22 1QE sing 26 n y S21 C25 1QE sing 27 n y N27 C26 1QE sing 28 n n C22 C23 1QE doub 29 n y C26 C25 1QE sing 30 n n C26 N28 1QE doub 31 n n C25 C24 1QE doub 32 n y C23 C24 1QE sing 33 n y N08 H1 1QE sing 34 n n C02 H2 1QE sing 35 n n C03 H3 1QE sing 36 n n C04 H4 1QE sing 37 n n N07 H5 1QE sing 38 n n C16 H6 1QE sing 39 n n C12 H7 1QE sing 40 n n C13 H8 1QE sing 41 n n C14 H9 1QE sing 42 n n C17 H10 1QE sing 43 n n C17 H11 1QE sing 44 n n C37 H12 1QE sing 45 n n C37 H13 1QE sing 46 n n C34 H14 1QE sing 47 n n C33 H15 1QE sing 48 n n C32 H16 1QE sing 49 n n C36 H17 1QE sing 50 n n N27 H18 1QE sing 51 n n N28 H19 1QE sing 52 n n C22 H20 1QE sing 53 n n C23 H21 1QE sing 54 n n C24 H22 1QE sing 55 n n # _atom_sites.entry_id 4KCI _atom_sites.fract_transf_matrix[1][1] 0.019298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 801 750 HEM HEM . D 3 H4B A 1 802 760 H4B BH4 . E 4 ACT A 1 803 860 ACT ACT . F 5 1QE A 1 804 800 1QE 3H9 . G 6 ZN A 1 805 900 ZN ZN . H 2 HEM B 1 801 750 HEM HEM . I 3 H4B B 1 802 760 H4B BH4 . J 5 1QE B 1 803 800 1QE 3H9 . K 4 ACT B 1 804 860 ACT ACT . L 7 HOH A 1 901 1 HOH HOH . L 7 HOH A 2 902 3 HOH HOH . L 7 HOH A 3 903 7 HOH HOH . L 7 HOH A 4 904 11 HOH HOH . L 7 HOH A 5 905 12 HOH HOH . L 7 HOH A 6 906 17 HOH HOH . L 7 HOH A 7 907 22 HOH HOH . L 7 HOH A 8 908 24 HOH HOH . L 7 HOH A 9 909 28 HOH HOH . L 7 HOH A 10 910 30 HOH HOH . L 7 HOH A 11 911 31 HOH HOH . L 7 HOH A 12 912 32 HOH HOH . L 7 HOH A 13 913 36 HOH HOH . L 7 HOH A 14 914 41 HOH HOH . L 7 HOH A 15 915 47 HOH HOH . L 7 HOH A 16 916 50 HOH HOH . L 7 HOH A 17 917 52 HOH HOH . L 7 HOH A 18 918 53 HOH HOH . L 7 HOH A 19 919 58 HOH HOH . L 7 HOH A 20 920 65 HOH HOH . L 7 HOH A 21 921 66 HOH HOH . L 7 HOH A 22 922 67 HOH HOH . L 7 HOH A 23 923 68 HOH HOH . L 7 HOH A 24 924 69 HOH HOH . L 7 HOH A 25 925 70 HOH HOH . L 7 HOH A 26 926 71 HOH HOH . L 7 HOH A 27 927 72 HOH HOH . L 7 HOH A 28 928 73 HOH HOH . L 7 HOH A 29 929 74 HOH HOH . L 7 HOH A 30 930 75 HOH HOH . L 7 HOH A 31 931 76 HOH HOH . L 7 HOH A 32 932 77 HOH HOH . L 7 HOH A 33 933 78 HOH HOH . L 7 HOH A 34 934 79 HOH HOH . L 7 HOH A 35 935 80 HOH HOH . L 7 HOH A 36 936 81 HOH HOH . L 7 HOH A 37 937 82 HOH HOH . L 7 HOH A 38 938 115 HOH HOH . L 7 HOH A 39 939 116 HOH HOH . L 7 HOH A 40 940 117 HOH HOH . L 7 HOH A 41 941 120 HOH HOH . M 7 HOH B 1 901 2 HOH HOH . M 7 HOH B 2 902 4 HOH HOH . M 7 HOH B 3 903 5 HOH HOH . M 7 HOH B 4 904 6 HOH HOH . M 7 HOH B 5 905 8 HOH HOH . M 7 HOH B 6 906 9 HOH HOH . M 7 HOH B 7 907 10 HOH HOH . M 7 HOH B 8 908 13 HOH HOH . M 7 HOH B 9 909 14 HOH HOH . M 7 HOH B 10 910 15 HOH HOH . M 7 HOH B 11 911 16 HOH HOH . M 7 HOH B 12 912 18 HOH HOH . M 7 HOH B 13 913 19 HOH HOH . M 7 HOH B 14 914 20 HOH HOH . M 7 HOH B 15 915 21 HOH HOH . M 7 HOH B 16 916 23 HOH HOH . M 7 HOH B 17 917 25 HOH HOH . M 7 HOH B 18 918 26 HOH HOH . M 7 HOH B 19 919 27 HOH HOH . M 7 HOH B 20 920 29 HOH HOH . M 7 HOH B 21 921 33 HOH HOH . M 7 HOH B 22 922 34 HOH HOH . M 7 HOH B 23 923 35 HOH HOH . M 7 HOH B 24 924 37 HOH HOH . M 7 HOH B 25 925 38 HOH HOH . M 7 HOH B 26 926 39 HOH HOH . M 7 HOH B 27 927 40 HOH HOH . M 7 HOH B 28 928 42 HOH HOH . M 7 HOH B 29 929 43 HOH HOH . M 7 HOH B 30 930 44 HOH HOH . M 7 HOH B 31 931 45 HOH HOH . M 7 HOH B 32 932 46 HOH HOH . M 7 HOH B 33 933 48 HOH HOH . M 7 HOH B 34 934 49 HOH HOH . M 7 HOH B 35 935 51 HOH HOH . M 7 HOH B 36 936 54 HOH HOH . M 7 HOH B 37 937 55 HOH HOH . M 7 HOH B 38 938 56 HOH HOH . M 7 HOH B 39 939 57 HOH HOH . M 7 HOH B 40 940 59 HOH HOH . M 7 HOH B 41 941 60 HOH HOH . M 7 HOH B 42 942 61 HOH HOH . M 7 HOH B 43 943 62 HOH HOH . M 7 HOH B 44 944 63 HOH HOH . M 7 HOH B 45 945 64 HOH HOH . M 7 HOH B 46 946 83 HOH HOH . M 7 HOH B 47 947 84 HOH HOH . M 7 HOH B 48 948 85 HOH HOH . M 7 HOH B 49 949 86 HOH HOH . M 7 HOH B 50 950 87 HOH HOH . M 7 HOH B 51 951 88 HOH HOH . M 7 HOH B 52 952 89 HOH HOH . M 7 HOH B 53 953 90 HOH HOH . M 7 HOH B 54 954 91 HOH HOH . M 7 HOH B 55 955 92 HOH HOH . M 7 HOH B 56 956 93 HOH HOH . M 7 HOH B 57 957 94 HOH HOH . M 7 HOH B 58 958 95 HOH HOH . M 7 HOH B 59 959 96 HOH HOH . M 7 HOH B 60 960 97 HOH HOH . M 7 HOH B 61 961 98 HOH HOH . M 7 HOH B 62 962 99 HOH HOH . M 7 HOH B 63 963 100 HOH HOH . M 7 HOH B 64 964 101 HOH HOH . M 7 HOH B 65 965 102 HOH HOH . M 7 HOH B 66 966 103 HOH HOH . M 7 HOH B 67 967 104 HOH HOH . M 7 HOH B 68 968 105 HOH HOH . M 7 HOH B 69 969 106 HOH HOH . M 7 HOH B 70 970 107 HOH HOH . M 7 HOH B 71 971 108 HOH HOH . M 7 HOH B 72 972 109 HOH HOH . M 7 HOH B 73 973 110 HOH HOH . M 7 HOH B 74 974 111 HOH HOH . M 7 HOH B 75 975 112 HOH HOH . M 7 HOH B 76 976 113 HOH HOH . M 7 HOH B 77 977 114 HOH HOH . M 7 HOH B 78 978 118 HOH HOH . M 7 HOH B 79 979 119 HOH HOH . M 7 HOH B 80 980 121 HOH HOH . M 7 HOH B 81 981 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N08 1QE . . . F 5 14.515 -0.526 23.847 1 30.83 ? N08 1QE 804 A 1 HETATM 2 C C06 1QE . . . F 5 13.438 0.219 23.528 1 39.17 ? C06 1QE 804 A 1 HETATM 3 C C05 1QE . . . F 5 13.466 1 22.278 1 36.12 ? C05 1QE 804 A 1 HETATM 4 S S01 1QE . . . F 5 14.963 1.626 21.871 1 43.55 ? S01 1QE 804 A 1 HETATM 5 C C02 1QE . . . F 5 14.415 2.368 20.414 1 36.48 ? C02 1QE 804 A 1 HETATM 6 C C03 1QE . . . F 5 13.062 2.065 20.283 1 34.26 ? C03 1QE 804 A 1 HETATM 7 C C04 1QE . . . F 5 12.522 1.299 21.323 1 30.21 ? C04 1QE 804 A 1 HETATM 8 N N07 1QE . . . F 5 12.335 0.324 24.325 1 39.37 ? N07 1QE 804 A 1 HETATM 9 C C11 1QE . . . F 5 11.469 1.401 24.341 1 40.47 ? C11 1QE 804 A 1 HETATM 10 C C16 1QE . . . F 5 10.079 1.206 24.559 1 40.01 ? C16 1QE 804 A 1 HETATM 11 C C12 1QE . . . F 5 11.911 2.679 23.994 1 42.13 ? C12 1QE 804 A 1 HETATM 12 C C13 1QE . . . F 5 10.992 3.709 23.867 1 42.89 ? C13 1QE 804 A 1 HETATM 13 C C14 1QE . . . F 5 9.642 3.504 24.101 1 42.09 ? C14 1QE 804 A 1 HETATM 14 C C15 1QE . . . F 5 9.164 2.259 24.47 1 44.01 ? C15 1QE 804 A 1 HETATM 15 C C17 1QE . . . F 5 7.675 2.059 24.686 1 52.52 ? C17 1QE 804 A 1 HETATM 16 C C37 1QE . . . F 5 7.037 3.106 25.61 1 61.9 ? C37 1QE 804 A 1 HETATM 17 C C35 1QE . . . F 5 5.574 2.828 25.979 1 69.7 ? C35 1QE 804 A 1 HETATM 18 C C34 1QE . . . F 5 4.982 1.561 25.851 1 73.53 ? C34 1QE 804 A 1 HETATM 19 C C33 1QE . . . F 5 3.643 1.379 26.195 1 74.68 ? C33 1QE 804 A 1 HETATM 20 C C32 1QE . . . F 5 2.889 2.455 26.666 1 79.28 ? C32 1QE 804 A 1 HETATM 21 C C36 1QE . . . F 5 4.797 3.897 26.461 1 76.8 ? C36 1QE 804 A 1 HETATM 22 C C31 1QE . . . F 5 3.441 3.743 26.81 1 80.47 ? C31 1QE 804 A 1 HETATM 23 N N27 1QE . . . F 5 2.796 4.858 27.309 1 83.95 ? N27 1QE 804 A 1 HETATM 24 C C26 1QE . . . F 5 1.581 4.952 27.898 1 95.93 ? C26 1QE 804 A 1 HETATM 25 N N28 1QE . . . F 5 1.217 6.157 28.356 1 83.41 ? N28 1QE 804 A 1 HETATM 26 C C25 1QE . . . F 5 0.634 3.786 28.084 1 113.59 ? C25 1QE 804 A 1 HETATM 27 S S21 1QE . . . F 5 -0.682 3.59 26.963 1 128.55 ? S21 1QE 804 A 1 HETATM 28 C C22 1QE . . . F 5 -1.29 2.156 27.72 1 115.21 ? C22 1QE 804 A 1 HETATM 29 C C23 1QE . . . F 5 -0.498 1.829 28.815 1 115.72 ? C23 1QE 804 A 1 HETATM 30 C C24 1QE . . . F 5 0.572 2.735 29.024 1 116.85 ? C24 1QE 804 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 30 #