data_4KCM # _model_server_result.job_id ECEmZdtqQkCSUeE6wtyQ8Q _model_server_result.datetime_utc '2024-11-26 21:49:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kcm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":802}' # _entry.id 4KCM # _exptl.entry_id 4KCM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KCM _cell.length_a 51.744 _cell.length_b 110.792 _cell.length_c 165.245 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KCM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc4 G ZN ZN . A ZN 805 1_555 B SG CYS 30 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc5 G ZN ZN . A ZN 805 1_555 B SG CYS 35 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 H FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 195 n y N1 C8A H4B sing 196 n y C2 N2 H4B sing 197 n n C2 N3 H4B sing 198 n y N2 HN21 H4B sing 199 n n N2 HN22 H4B sing 200 n n N3 C4 H4B sing 201 n y N3 HN3 H4B sing 202 n n C4 O4 H4B doub 203 n n C4 C4A H4B sing 204 n y C4A C8A H4B doub 205 n y C4A N5 H4B sing 206 n n C8A N8 H4B sing 207 n n N5 C6 H4B sing 208 n n N5 HN5 H4B sing 209 n n N8 C7 H4B sing 210 n n N8 HN8 H4B sing 211 n n C6 C7 H4B sing 212 n n C6 C9 H4B sing 213 n n C6 H6 H4B sing 214 n n C7 H71 H4B sing 215 n n C7 H72 H4B sing 216 n n C9 O9 H4B sing 217 n n C9 C10 H4B sing 218 n n C9 H9 H4B sing 219 n n O9 HO9 H4B sing 220 n n C10 C11 H4B sing 221 n n C10 O10 H4B sing 222 n n C10 H10 H4B sing 223 n n C11 H111 H4B sing 224 n n C11 H112 H4B sing 225 n n C11 H113 H4B sing 226 n n O10 HO0 H4B sing 227 n n # _atom_sites.entry_id 4KCM _atom_sites.fract_transf_matrix[1][1] 0.019326 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 801 750 HEM HEM . D 3 H4B A 1 802 760 H4B BH4 . E 4 1QF A 1 803 800 1QF H50 . F 5 BR A 1 804 850 BR BR . G 6 ZN A 1 805 900 ZN ZN . H 2 HEM B 1 801 750 HEM HEM . I 3 H4B B 1 802 760 H4B BH4 . J 4 1QF B 1 803 800 1QF H50 . K 5 BR B 1 804 850 BR BR . L 7 HOH A 1 901 1 HOH HOH . L 7 HOH A 2 902 3 HOH HOH . L 7 HOH A 3 903 4 HOH HOH . L 7 HOH A 4 904 5 HOH HOH . L 7 HOH A 5 905 7 HOH HOH . L 7 HOH A 6 906 8 HOH HOH . L 7 HOH A 7 907 10 HOH HOH . L 7 HOH A 8 908 12 HOH HOH . L 7 HOH A 9 909 14 HOH HOH . L 7 HOH A 10 910 15 HOH HOH . L 7 HOH A 11 911 23 HOH HOH . L 7 HOH A 12 912 27 HOH HOH . L 7 HOH A 13 913 28 HOH HOH . L 7 HOH A 14 914 34 HOH HOH . L 7 HOH A 15 915 36 HOH HOH . L 7 HOH A 16 916 37 HOH HOH . L 7 HOH A 17 917 40 HOH HOH . L 7 HOH A 18 918 41 HOH HOH . L 7 HOH A 19 919 42 HOH HOH . L 7 HOH A 20 920 43 HOH HOH . L 7 HOH A 21 921 44 HOH HOH . L 7 HOH A 22 922 46 HOH HOH . L 7 HOH A 23 923 47 HOH HOH . L 7 HOH A 24 924 48 HOH HOH . L 7 HOH A 25 925 54 HOH HOH . L 7 HOH A 26 926 55 HOH HOH . L 7 HOH A 27 927 68 HOH HOH . L 7 HOH A 28 928 69 HOH HOH . L 7 HOH A 29 929 73 HOH HOH . L 7 HOH A 30 930 74 HOH HOH . L 7 HOH A 31 931 77 HOH HOH . L 7 HOH A 32 932 81 HOH HOH . L 7 HOH A 33 933 86 HOH HOH . L 7 HOH A 34 934 87 HOH HOH . L 7 HOH A 35 935 89 HOH HOH . L 7 HOH A 36 936 92 HOH HOH . L 7 HOH A 37 937 93 HOH HOH . L 7 HOH A 38 938 96 HOH HOH . L 7 HOH A 39 939 97 HOH HOH . L 7 HOH A 40 940 100 HOH HOH . L 7 HOH A 41 941 102 HOH HOH . L 7 HOH A 42 942 103 HOH HOH . L 7 HOH A 43 943 107 HOH HOH . L 7 HOH A 44 944 108 HOH HOH . L 7 HOH A 45 945 109 HOH HOH . L 7 HOH A 46 946 110 HOH HOH . L 7 HOH A 47 947 116 HOH HOH . L 7 HOH A 48 948 123 HOH HOH . L 7 HOH A 49 949 126 HOH HOH . L 7 HOH A 50 950 128 HOH HOH . L 7 HOH A 51 951 129 HOH HOH . L 7 HOH A 52 952 132 HOH HOH . L 7 HOH A 53 953 135 HOH HOH . L 7 HOH A 54 954 138 HOH HOH . L 7 HOH A 55 955 139 HOH HOH . L 7 HOH A 56 956 140 HOH HOH . L 7 HOH A 57 957 146 HOH HOH . L 7 HOH A 58 958 147 HOH HOH . L 7 HOH A 59 959 148 HOH HOH . L 7 HOH A 60 960 150 HOH HOH . L 7 HOH A 61 961 152 HOH HOH . L 7 HOH A 62 962 153 HOH HOH . L 7 HOH A 63 963 155 HOH HOH . L 7 HOH A 64 964 157 HOH HOH . L 7 HOH A 65 965 158 HOH HOH . L 7 HOH A 66 966 160 HOH HOH . L 7 HOH A 67 967 161 HOH HOH . L 7 HOH A 68 968 164 HOH HOH . L 7 HOH A 69 969 165 HOH HOH . L 7 HOH A 70 970 166 HOH HOH . L 7 HOH A 71 971 169 HOH HOH . L 7 HOH A 72 972 170 HOH HOH . L 7 HOH A 73 973 171 HOH HOH . L 7 HOH A 74 974 172 HOH HOH . L 7 HOH A 75 975 173 HOH HOH . L 7 HOH A 76 976 174 HOH HOH . L 7 HOH A 77 977 175 HOH HOH . L 7 HOH A 78 978 176 HOH HOH . L 7 HOH A 79 979 177 HOH HOH . L 7 HOH A 80 980 178 HOH HOH . L 7 HOH A 81 981 179 HOH HOH . L 7 HOH A 82 982 180 HOH HOH . L 7 HOH A 83 983 181 HOH HOH . L 7 HOH A 84 984 182 HOH HOH . L 7 HOH A 85 985 183 HOH HOH . L 7 HOH A 86 986 184 HOH HOH . L 7 HOH A 87 987 185 HOH HOH . L 7 HOH A 88 988 186 HOH HOH . L 7 HOH A 89 989 187 HOH HOH . L 7 HOH A 90 990 188 HOH HOH . L 7 HOH A 91 991 189 HOH HOH . L 7 HOH A 92 992 190 HOH HOH . M 7 HOH B 1 901 2 HOH HOH . M 7 HOH B 2 902 6 HOH HOH . M 7 HOH B 3 903 9 HOH HOH . M 7 HOH B 4 904 11 HOH HOH . M 7 HOH B 5 905 13 HOH HOH . M 7 HOH B 6 906 16 HOH HOH . M 7 HOH B 7 907 17 HOH HOH . M 7 HOH B 8 908 18 HOH HOH . M 7 HOH B 9 909 19 HOH HOH . M 7 HOH B 10 910 20 HOH HOH . M 7 HOH B 11 911 21 HOH HOH . M 7 HOH B 12 912 22 HOH HOH . M 7 HOH B 13 913 24 HOH HOH . M 7 HOH B 14 914 25 HOH HOH . M 7 HOH B 15 915 26 HOH HOH . M 7 HOH B 16 916 29 HOH HOH . M 7 HOH B 17 917 30 HOH HOH . M 7 HOH B 18 918 31 HOH HOH . M 7 HOH B 19 919 32 HOH HOH . M 7 HOH B 20 920 33 HOH HOH . M 7 HOH B 21 921 35 HOH HOH . M 7 HOH B 22 922 38 HOH HOH . M 7 HOH B 23 923 39 HOH HOH . M 7 HOH B 24 924 45 HOH HOH . M 7 HOH B 25 925 49 HOH HOH . M 7 HOH B 26 926 50 HOH HOH . M 7 HOH B 27 927 51 HOH HOH . M 7 HOH B 28 928 52 HOH HOH . M 7 HOH B 29 929 53 HOH HOH . M 7 HOH B 30 930 56 HOH HOH . M 7 HOH B 31 931 57 HOH HOH . M 7 HOH B 32 932 58 HOH HOH . M 7 HOH B 33 933 59 HOH HOH . M 7 HOH B 34 934 60 HOH HOH . M 7 HOH B 35 935 61 HOH HOH . M 7 HOH B 36 936 62 HOH HOH . M 7 HOH B 37 937 63 HOH HOH . M 7 HOH B 38 938 64 HOH HOH . M 7 HOH B 39 939 65 HOH HOH . M 7 HOH B 40 940 66 HOH HOH . M 7 HOH B 41 941 67 HOH HOH . M 7 HOH B 42 942 70 HOH HOH . M 7 HOH B 43 943 71 HOH HOH . M 7 HOH B 44 944 72 HOH HOH . M 7 HOH B 45 945 75 HOH HOH . M 7 HOH B 46 946 76 HOH HOH . M 7 HOH B 47 947 78 HOH HOH . M 7 HOH B 48 948 79 HOH HOH . M 7 HOH B 49 949 80 HOH HOH . M 7 HOH B 50 950 82 HOH HOH . M 7 HOH B 51 951 83 HOH HOH . M 7 HOH B 52 952 84 HOH HOH . M 7 HOH B 53 953 85 HOH HOH . M 7 HOH B 54 954 88 HOH HOH . M 7 HOH B 55 955 90 HOH HOH . M 7 HOH B 56 956 91 HOH HOH . M 7 HOH B 57 957 94 HOH HOH . M 7 HOH B 58 958 95 HOH HOH . M 7 HOH B 59 959 98 HOH HOH . M 7 HOH B 60 960 99 HOH HOH . M 7 HOH B 61 961 101 HOH HOH . M 7 HOH B 62 962 104 HOH HOH . M 7 HOH B 63 963 105 HOH HOH . M 7 HOH B 64 964 106 HOH HOH . M 7 HOH B 65 965 111 HOH HOH . M 7 HOH B 66 966 112 HOH HOH . M 7 HOH B 67 967 113 HOH HOH . M 7 HOH B 68 968 114 HOH HOH . M 7 HOH B 69 969 115 HOH HOH . M 7 HOH B 70 970 117 HOH HOH . M 7 HOH B 71 971 118 HOH HOH . M 7 HOH B 72 972 119 HOH HOH . M 7 HOH B 73 973 120 HOH HOH . M 7 HOH B 74 974 121 HOH HOH . M 7 HOH B 75 975 122 HOH HOH . M 7 HOH B 76 976 124 HOH HOH . M 7 HOH B 77 977 125 HOH HOH . M 7 HOH B 78 978 127 HOH HOH . M 7 HOH B 79 979 130 HOH HOH . M 7 HOH B 80 980 131 HOH HOH . M 7 HOH B 81 981 133 HOH HOH . M 7 HOH B 82 982 134 HOH HOH . M 7 HOH B 83 983 136 HOH HOH . M 7 HOH B 84 984 137 HOH HOH . M 7 HOH B 85 985 141 HOH HOH . M 7 HOH B 86 986 142 HOH HOH . M 7 HOH B 87 987 143 HOH HOH . M 7 HOH B 88 988 144 HOH HOH . M 7 HOH B 89 989 145 HOH HOH . M 7 HOH B 90 990 151 HOH HOH . M 7 HOH B 91 991 154 HOH HOH . M 7 HOH B 92 992 156 HOH HOH . M 7 HOH B 93 993 159 HOH HOH . M 7 HOH B 94 994 162 HOH HOH . M 7 HOH B 95 995 163 HOH HOH . M 7 HOH B 96 996 167 HOH HOH . M 7 HOH B 97 997 168 HOH HOH . M 7 HOH B 98 998 191 HOH HOH . M 7 HOH B 99 999 192 HOH HOH . M 7 HOH B 100 1000 193 HOH HOH . M 7 HOH B 101 1001 194 HOH HOH . M 7 HOH B 102 1002 195 HOH HOH . M 7 HOH B 103 1003 196 HOH HOH . M 7 HOH B 104 1004 197 HOH HOH . M 7 HOH B 105 1005 198 HOH HOH . M 7 HOH B 106 1006 199 HOH HOH . M 7 HOH B 107 1007 200 HOH HOH . M 7 HOH B 108 1008 201 HOH HOH . M 7 HOH B 109 1009 202 HOH HOH . M 7 HOH B 110 1010 203 HOH HOH . M 7 HOH B 111 1011 204 HOH HOH . M 7 HOH B 112 1012 205 HOH HOH . M 7 HOH B 113 1013 206 HOH HOH . M 7 HOH B 114 1014 207 HOH HOH . M 7 HOH B 115 1015 208 HOH HOH . M 7 HOH B 116 1016 209 HOH HOH . M 7 HOH B 117 1017 210 HOH HOH . M 7 HOH B 118 1018 211 HOH HOH . M 7 HOH B 119 1019 212 HOH HOH . M 7 HOH B 120 1020 213 HOH HOH . M 7 HOH B 121 1021 214 HOH HOH . M 7 HOH B 122 1022 215 HOH HOH . M 7 HOH B 123 1023 216 HOH HOH . M 7 HOH B 124 1024 217 HOH HOH . M 7 HOH B 125 1025 218 HOH HOH . M 7 HOH B 126 1026 219 HOH HOH . M 7 HOH B 127 1027 220 HOH HOH . M 7 HOH B 128 1028 221 HOH HOH . M 7 HOH B 129 1029 222 HOH HOH . M 7 HOH B 130 1030 223 HOH HOH . M 7 HOH B 131 1031 224 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . I 3 14.323 3.596 48.736 1 37.16 ? N1 H4B 802 B 1 HETATM 2 C C2 H4B . . . I 3 14.382 3.166 50.041 1 36.9 ? C2 H4B 802 B 1 HETATM 3 N N2 H4B . . . I 3 13.348 2.552 50.633 1 34.69 ? N2 H4B 802 B 1 HETATM 4 N N3 H4B . . . I 3 15.486 3.337 50.775 1 36.44 ? N3 H4B 802 B 1 HETATM 5 C C4 H4B . . . I 3 16.578 3.962 50.245 1 37.27 ? C4 H4B 802 B 1 HETATM 6 O O4 H4B . . . I 3 17.612 4.092 50.957 1 32.96 ? O4 H4B 802 B 1 HETATM 7 C C4A H4B . . . I 3 16.543 4.425 48.929 1 36.01 ? C4A H4B 802 B 1 HETATM 8 C C8A H4B . . . I 3 15.377 4.229 48.192 1 33.83 ? C8A H4B 802 B 1 HETATM 9 N N5 H4B . . . I 3 17.61 5.084 48.352 1 37.09 ? N5 H4B 802 B 1 HETATM 10 N N8 H4B . . . I 3 15.307 4.643 46.896 1 35.23 ? N8 H4B 802 B 1 HETATM 11 C C6 H4B . . . I 3 17.278 6.057 47.297 1 37.71 ? C6 H4B 802 B 1 HETATM 12 C C7 H4B . . . I 3 16.443 5.318 46.241 1 36.17 ? C7 H4B 802 B 1 HETATM 13 C C9 H4B . . . I 3 18.509 6.707 46.64 1 37.97 ? C9 H4B 802 B 1 HETATM 14 O O9 H4B . . . I 3 19.441 5.689 46.247 1 38.87 ? O9 H4B 802 B 1 HETATM 15 C C10 H4B . . . I 3 18.189 7.576 45.403 1 40.36 ? C10 H4B 802 B 1 HETATM 16 C C11 H4B . . . I 3 19.443 8.269 44.806 1 36.29 ? C11 H4B 802 B 1 HETATM 17 O O10 H4B . . . I 3 17.169 8.549 45.692 1 43 ? O10 H4B 802 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 17 #