data_4KCX # _model_server_result.job_id Qya98WrHB7kIEL7YyJaSYg _model_server_result.datetime_utc '2024-11-25 09:27:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kcx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 4KCX # _exptl.entry_id 4KCX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.494 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[({3-ethyl-5-[(2S)-2-(2-hydroxyethyl)piperidin-1-yl]pyrazolo[1,5-a]pyrimidin-7-yl}amino)methyl]-1-hydroxypyridinium _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.12 _cell.angle_gamma 90 _cell.entry_id 4KCX _cell.length_a 64.72 _cell.length_b 29.95 _cell.length_c 71.38 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KCX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H29 N6 O2 1' _chem_comp.formula_weight 397.494 _chem_comp.id 1QK _chem_comp.mon_nstd_flag . _chem_comp.name 3-[({3-ethyl-5-[(2S)-2-(2-hydroxyethyl)piperidin-1-yl]pyrazolo[1,5-a]pyrimidin-7-yl}amino)methyl]-1-hydroxypyridinium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DINACICLIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 1QK sing 1 n n C02 C03 1QK sing 2 n n C04 C03 1QK sing 3 n y C04 N05 1QK doub 4 n y C03 C07 1QK doub 5 n y N05 N06 1QK sing 6 n y C07 N06 1QK sing 7 n y C07 N08 1QK sing 8 n y O29 C28 1QK sing 9 n n N06 C11 1QK sing 10 n y C28 C27 1QK sing 11 n n N08 C09 1QK doub 12 n y C11 N12 1QK sing 13 n n C11 C10 1QK doub 14 n y N12 C13 1QK sing 15 n n C09 C10 1QK sing 16 n y C09 N21 1QK sing 17 n n C27 C26 1QK sing 18 n n C26 N21 1QK sing 19 n n C26 C25 1QK sing 20 n n N21 C22 1QK sing 21 n n C13 C14 1QK sing 22 n n C15 C14 1QK doub 23 n y C15 C16 1QK sing 24 n y C25 C24 1QK sing 25 n n C14 C19 1QK sing 26 n y C16 C17 1QK doub 27 n y C22 C23 1QK sing 28 n n C24 C23 1QK sing 29 n n C19 N18 1QK doub 30 n y C17 N18 1QK sing 31 n y N18 O20 1QK sing 32 n n C10 H1 1QK sing 33 n n N12 H2 1QK sing 34 n n C13 H3 1QK sing 35 n n C13 H4 1QK sing 36 n n C15 H5 1QK sing 37 n n C17 H6 1QK sing 38 n n C22 H7 1QK sing 39 n n C22 H8 1QK sing 40 n n C24 H9 1QK sing 41 n n C24 H10 1QK sing 42 n n C26 H11 1QK sing 43 n n C28 H12 1QK sing 44 n n C28 H13 1QK sing 45 n n C01 H14 1QK sing 46 n n C01 H15 1QK sing 47 n n C01 H16 1QK sing 48 n n C02 H17 1QK sing 49 n n C02 H18 1QK sing 50 n n C04 H19 1QK sing 51 n n C16 H20 1QK sing 52 n n C19 H21 1QK sing 53 n n O20 H22 1QK sing 54 n n C23 H23 1QK sing 55 n n C23 H24 1QK sing 56 n n C25 H25 1QK sing 57 n n C25 H26 1QK sing 58 n n C27 H27 1QK sing 59 n n C27 H28 1QK sing 60 n n O29 H29 1QK sing 61 n n # _atom_sites.entry_id 4KCX _atom_sites.fract_transf_matrix[1][1] 0.015451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001113 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1QK A 1 201 1 1QK LIG . D 3 CL A 1 202 1 CL CL . E 2 1QK B 1 201 2 1QK LIG . F 4 HOH A 1 301 1 HOH HOH . F 4 HOH A 2 302 4 HOH HOH . F 4 HOH A 3 303 6 HOH HOH . F 4 HOH A 4 304 7 HOH HOH . F 4 HOH A 5 305 11 HOH HOH . F 4 HOH A 6 306 12 HOH HOH . F 4 HOH A 7 307 13 HOH HOH . F 4 HOH A 8 308 15 HOH HOH . F 4 HOH A 9 309 16 HOH HOH . F 4 HOH A 10 310 19 HOH HOH . F 4 HOH A 11 311 21 HOH HOH . F 4 HOH A 12 312 22 HOH HOH . F 4 HOH A 13 313 23 HOH HOH . F 4 HOH A 14 314 25 HOH HOH . F 4 HOH A 15 315 26 HOH HOH . F 4 HOH A 16 316 27 HOH HOH . F 4 HOH A 17 317 30 HOH HOH . F 4 HOH A 18 318 31 HOH HOH . F 4 HOH A 19 319 32 HOH HOH . F 4 HOH A 20 320 34 HOH HOH . F 4 HOH A 21 321 40 HOH HOH . F 4 HOH A 22 322 46 HOH HOH . F 4 HOH A 23 323 48 HOH HOH . F 4 HOH A 24 324 49 HOH HOH . F 4 HOH A 25 325 51 HOH HOH . F 4 HOH A 26 326 52 HOH HOH . F 4 HOH A 27 327 53 HOH HOH . F 4 HOH A 28 328 54 HOH HOH . F 4 HOH A 29 329 56 HOH HOH . F 4 HOH A 30 330 58 HOH HOH . F 4 HOH A 31 331 59 HOH HOH . F 4 HOH A 32 332 62 HOH HOH . F 4 HOH A 33 333 63 HOH HOH . F 4 HOH A 34 334 64 HOH HOH . F 4 HOH A 35 335 68 HOH HOH . F 4 HOH A 36 336 69 HOH HOH . F 4 HOH A 37 337 71 HOH HOH . F 4 HOH A 38 338 72 HOH HOH . F 4 HOH A 39 339 73 HOH HOH . F 4 HOH A 40 340 74 HOH HOH . F 4 HOH A 41 341 78 HOH HOH . F 4 HOH A 42 342 80 HOH HOH . F 4 HOH A 43 343 81 HOH HOH . F 4 HOH A 44 344 82 HOH HOH . F 4 HOH A 45 345 83 HOH HOH . F 4 HOH A 46 346 84 HOH HOH . F 4 HOH A 47 347 85 HOH HOH . F 4 HOH A 48 348 86 HOH HOH . F 4 HOH A 49 349 89 HOH HOH . F 4 HOH A 50 350 92 HOH HOH . F 4 HOH A 51 351 95 HOH HOH . F 4 HOH A 52 352 97 HOH HOH . F 4 HOH A 53 353 99 HOH HOH . F 4 HOH A 54 354 101 HOH HOH . F 4 HOH A 55 355 104 HOH HOH . F 4 HOH A 56 356 105 HOH HOH . F 4 HOH A 57 357 106 HOH HOH . F 4 HOH A 58 358 109 HOH HOH . F 4 HOH A 59 359 112 HOH HOH . F 4 HOH A 60 360 114 HOH HOH . F 4 HOH A 61 361 115 HOH HOH . F 4 HOH A 62 362 117 HOH HOH . F 4 HOH A 63 363 118 HOH HOH . F 4 HOH A 64 364 121 HOH HOH . F 4 HOH A 65 365 122 HOH HOH . F 4 HOH A 66 366 123 HOH HOH . F 4 HOH A 67 367 125 HOH HOH . F 4 HOH A 68 368 126 HOH HOH . F 4 HOH A 69 369 127 HOH HOH . F 4 HOH A 70 370 130 HOH HOH . F 4 HOH A 71 371 133 HOH HOH . F 4 HOH A 72 372 134 HOH HOH . G 4 HOH B 1 301 2 HOH HOH . G 4 HOH B 2 302 3 HOH HOH . G 4 HOH B 3 303 5 HOH HOH . G 4 HOH B 4 304 8 HOH HOH . G 4 HOH B 5 305 9 HOH HOH . G 4 HOH B 6 306 10 HOH HOH . G 4 HOH B 7 307 14 HOH HOH . G 4 HOH B 8 308 17 HOH HOH . G 4 HOH B 9 309 18 HOH HOH . G 4 HOH B 10 310 20 HOH HOH . G 4 HOH B 11 311 24 HOH HOH . G 4 HOH B 12 312 28 HOH HOH . G 4 HOH B 13 313 29 HOH HOH . G 4 HOH B 14 314 33 HOH HOH . G 4 HOH B 15 315 35 HOH HOH . G 4 HOH B 16 316 36 HOH HOH . G 4 HOH B 17 317 37 HOH HOH . G 4 HOH B 18 318 38 HOH HOH . G 4 HOH B 19 319 39 HOH HOH . G 4 HOH B 20 320 41 HOH HOH . G 4 HOH B 21 321 42 HOH HOH . G 4 HOH B 22 322 43 HOH HOH . G 4 HOH B 23 323 44 HOH HOH . G 4 HOH B 24 324 45 HOH HOH . G 4 HOH B 25 325 47 HOH HOH . G 4 HOH B 26 326 50 HOH HOH . G 4 HOH B 27 327 55 HOH HOH . G 4 HOH B 28 328 57 HOH HOH . G 4 HOH B 29 329 60 HOH HOH . G 4 HOH B 30 330 61 HOH HOH . G 4 HOH B 31 331 65 HOH HOH . G 4 HOH B 32 332 66 HOH HOH . G 4 HOH B 33 333 67 HOH HOH . G 4 HOH B 34 334 70 HOH HOH . G 4 HOH B 35 335 75 HOH HOH . G 4 HOH B 36 336 76 HOH HOH . G 4 HOH B 37 337 77 HOH HOH . G 4 HOH B 38 338 79 HOH HOH . G 4 HOH B 39 339 87 HOH HOH . G 4 HOH B 40 340 88 HOH HOH . G 4 HOH B 41 341 90 HOH HOH . G 4 HOH B 42 342 91 HOH HOH . G 4 HOH B 43 343 93 HOH HOH . G 4 HOH B 44 344 94 HOH HOH . G 4 HOH B 45 345 96 HOH HOH . G 4 HOH B 46 346 98 HOH HOH . G 4 HOH B 47 347 100 HOH HOH . G 4 HOH B 48 348 102 HOH HOH . G 4 HOH B 49 349 103 HOH HOH . G 4 HOH B 50 350 107 HOH HOH . G 4 HOH B 51 351 108 HOH HOH . G 4 HOH B 52 352 110 HOH HOH . G 4 HOH B 53 353 111 HOH HOH . G 4 HOH B 54 354 113 HOH HOH . G 4 HOH B 55 355 116 HOH HOH . G 4 HOH B 56 356 119 HOH HOH . G 4 HOH B 57 357 120 HOH HOH . G 4 HOH B 58 358 124 HOH HOH . G 4 HOH B 59 359 128 HOH HOH . G 4 HOH B 60 360 129 HOH HOH . G 4 HOH B 61 361 131 HOH HOH . G 4 HOH B 62 362 132 HOH HOH . G 4 HOH B 63 363 135 HOH HOH . G 4 HOH B 64 364 136 HOH HOH . G 4 HOH B 65 365 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 1QK . . . E 2 28.349 -36.083 31.94 1 32.76 ? C10 1QK 201 B 1 HETATM 2 N N12 1QK . . . E 2 28.27 -33.68 32.676 1 31.53 ? N12 1QK 201 B 1 HETATM 3 C C13 1QK . . . E 2 28.836 -33.251 31.426 1 26.87 ? C13 1QK 201 B 1 HETATM 4 C C15 1QK . . . E 2 26.388 -33.006 30.625 1 27.13 ? C15 1QK 201 B 1 HETATM 5 C C17 1QK . . . E 2 25.869 -32.021 28.344 1 30.01 ? C17 1QK 201 B 1 HETATM 6 C C22 1QK . . . E 2 29.184 -38.316 30.146 1 24.07 ? C22 1QK 201 B 1 HETATM 7 C C24 1QK . . . E 2 28.62 -40.588 29.283 1 25.97 ? C24 1QK 201 B 1 HETATM 8 C C26 1QK . . . E 2 28.323 -40.02 31.638 1 24.43 ? C26 1QK 201 B 1 HETATM 9 C C28 1QK . . . E 2 29.552 -39.888 33.969 1 20.61 ? C28 1QK 201 B 1 HETATM 10 C C01 1QK . . . E 2 24.12 -38.448 35.979 1 25.48 ? C01 1QK 201 B 1 HETATM 11 C C02 1QK . . . E 2 25.599 -38.175 36.175 1 23.95 ? C02 1QK 201 B 1 HETATM 12 C C03 1QK . . . E 2 26.153 -36.865 35.556 1 38.22 ? C03 1QK 201 B 1 HETATM 13 C C04 1QK . . . E 2 26.019 -35.58 36.072 1 41.6 ? C04 1QK 201 B 1 HETATM 14 N N05 1QK . . . E 2 26.647 -34.696 35.197 1 38.43 ? N05 1QK 201 B 1 HETATM 15 N N06 1QK . . . E 2 27.182 -35.448 34.12 1 37.67 ? N06 1QK 201 B 1 HETATM 16 C C07 1QK . . . E 2 26.866 -36.763 34.34 1 35.41 ? C07 1QK 201 B 1 HETATM 17 N N08 1QK . . . E 2 27.278 -37.799 33.368 1 31.27 ? N08 1QK 201 B 1 HETATM 18 C C09 1QK . . . E 2 28.009 -37.474 32.205 1 32.97 ? C09 1QK 201 B 1 HETATM 19 C C11 1QK . . . E 2 27.941 -35.072 32.89 1 35.93 ? C11 1QK 201 B 1 HETATM 20 C C14 1QK . . . E 2 27.83 -32.844 30.35 1 21.77 ? C14 1QK 201 B 1 HETATM 21 C C16 1QK . . . E 2 25.41 -32.595 29.611 1 28.82 ? C16 1QK 201 B 1 HETATM 22 N N18 1QK . . . E 2 27.321 -31.859 28.086 1 36 ? N18 1QK 201 B 1 HETATM 23 C C19 1QK . . . E 2 28.29 -32.266 29.091 1 29.61 ? C19 1QK 201 B 1 HETATM 24 O O20 1QK . . . E 2 27.738 -31.378 27.013 1 52.87 ? O20 1QK 201 B 1 HETATM 25 N N21 1QK . . . E 2 28.362 -38.577 31.33 1 25.26 ? N21 1QK 201 B 1 HETATM 26 C C23 1QK . . . E 2 28.8 -39.152 28.961 1 23.27 ? C23 1QK 201 B 1 HETATM 27 C C25 1QK . . . E 2 27.787 -40.803 30.474 1 28.07 ? C25 1QK 201 B 1 HETATM 28 C C27 1QK . . . E 2 29.511 -40.329 32.519 1 21.31 ? C27 1QK 201 B 1 HETATM 29 O O29 1QK . . . E 2 28.332 -40.059 34.663 1 27.08 ? O29 1QK 201 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #