data_4KD1 # _model_server_result.job_id AY7GBX_EbAn952js07tEFg _model_server_result.datetime_utc '2024-11-05 04:45:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kd1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4KD1 # _exptl.entry_id 4KD1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.494 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[({3-ethyl-5-[(2S)-2-(2-hydroxyethyl)piperidin-1-yl]pyrazolo[1,5-a]pyrimidin-7-yl}amino)methyl]-1-hydroxypyridinium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KD1 _cell.length_a 53.69 _cell.length_b 71.89 _cell.length_c 72.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KD1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H29 N6 O2 1' _chem_comp.formula_weight 397.494 _chem_comp.id 1QK _chem_comp.mon_nstd_flag . _chem_comp.name 3-[({3-ethyl-5-[(2S)-2-(2-hydroxyethyl)piperidin-1-yl]pyrazolo[1,5-a]pyrimidin-7-yl}amino)methyl]-1-hydroxypyridinium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DINACICLIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 1QK sing 1 n n C02 C03 1QK sing 2 n n C04 C03 1QK sing 3 n y C04 N05 1QK doub 4 n y C03 C07 1QK doub 5 n y N05 N06 1QK sing 6 n y C07 N06 1QK sing 7 n y C07 N08 1QK sing 8 n y O29 C28 1QK sing 9 n n N06 C11 1QK sing 10 n y C28 C27 1QK sing 11 n n N08 C09 1QK doub 12 n y C11 N12 1QK sing 13 n n C11 C10 1QK doub 14 n y N12 C13 1QK sing 15 n n C09 C10 1QK sing 16 n y C09 N21 1QK sing 17 n n C27 C26 1QK sing 18 n n C26 N21 1QK sing 19 n n C26 C25 1QK sing 20 n n N21 C22 1QK sing 21 n n C13 C14 1QK sing 22 n n C15 C14 1QK doub 23 n y C15 C16 1QK sing 24 n y C25 C24 1QK sing 25 n n C14 C19 1QK sing 26 n y C16 C17 1QK doub 27 n y C22 C23 1QK sing 28 n n C24 C23 1QK sing 29 n n C19 N18 1QK doub 30 n y C17 N18 1QK sing 31 n y N18 O20 1QK sing 32 n n C10 H1 1QK sing 33 n n N12 H2 1QK sing 34 n n C13 H3 1QK sing 35 n n C13 H4 1QK sing 36 n n C15 H5 1QK sing 37 n n C17 H6 1QK sing 38 n n C22 H7 1QK sing 39 n n C22 H8 1QK sing 40 n n C24 H9 1QK sing 41 n n C24 H10 1QK sing 42 n n C26 H11 1QK sing 43 n n C28 H12 1QK sing 44 n n C28 H13 1QK sing 45 n n C01 H14 1QK sing 46 n n C01 H15 1QK sing 47 n n C01 H16 1QK sing 48 n n C02 H17 1QK sing 49 n n C02 H18 1QK sing 50 n n C04 H19 1QK sing 51 n n C16 H20 1QK sing 52 n n C19 H21 1QK sing 53 n n O20 H22 1QK sing 54 n n C23 H23 1QK sing 55 n n C23 H24 1QK sing 56 n n C25 H25 1QK sing 57 n n C25 H26 1QK sing 58 n n C27 H27 1QK sing 59 n n C27 H28 1QK sing 60 n n O29 H29 1QK sing 61 n n # _atom_sites.entry_id 4KD1 _atom_sites.fract_transf_matrix[1][1] 0.018625 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013812 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 1 EDO EDO . C 3 1QK A 1 302 1 1QK LIG . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 2 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 7 HOH HOH . D 4 HOH A 8 408 8 HOH HOH . D 4 HOH A 9 409 9 HOH HOH . D 4 HOH A 10 410 10 HOH HOH . D 4 HOH A 11 411 11 HOH HOH . D 4 HOH A 12 412 12 HOH HOH . D 4 HOH A 13 413 13 HOH HOH . D 4 HOH A 14 414 14 HOH HOH . D 4 HOH A 15 415 15 HOH HOH . D 4 HOH A 16 416 16 HOH HOH . D 4 HOH A 17 417 17 HOH HOH . D 4 HOH A 18 418 18 HOH HOH . D 4 HOH A 19 419 19 HOH HOH . D 4 HOH A 20 420 20 HOH HOH . D 4 HOH A 21 421 21 HOH HOH . D 4 HOH A 22 422 22 HOH HOH . D 4 HOH A 23 423 23 HOH HOH . D 4 HOH A 24 424 24 HOH HOH . D 4 HOH A 25 425 25 HOH HOH . D 4 HOH A 26 426 26 HOH HOH . D 4 HOH A 27 427 27 HOH HOH . D 4 HOH A 28 428 28 HOH HOH . D 4 HOH A 29 429 29 HOH HOH . D 4 HOH A 30 430 30 HOH HOH . D 4 HOH A 31 431 31 HOH HOH . D 4 HOH A 32 432 32 HOH HOH . D 4 HOH A 33 433 33 HOH HOH . D 4 HOH A 34 434 34 HOH HOH . D 4 HOH A 35 435 35 HOH HOH . D 4 HOH A 36 436 36 HOH HOH . D 4 HOH A 37 437 37 HOH HOH . D 4 HOH A 38 438 38 HOH HOH . D 4 HOH A 39 439 39 HOH HOH . D 4 HOH A 40 440 40 HOH HOH . D 4 HOH A 41 441 41 HOH HOH . D 4 HOH A 42 442 42 HOH HOH . D 4 HOH A 43 443 43 HOH HOH . D 4 HOH A 44 444 44 HOH HOH . D 4 HOH A 45 445 45 HOH HOH . D 4 HOH A 46 446 46 HOH HOH . D 4 HOH A 47 447 47 HOH HOH . D 4 HOH A 48 448 48 HOH HOH . D 4 HOH A 49 449 49 HOH HOH . D 4 HOH A 50 450 50 HOH HOH . D 4 HOH A 51 451 51 HOH HOH . D 4 HOH A 52 452 52 HOH HOH . D 4 HOH A 53 453 53 HOH HOH . D 4 HOH A 54 454 54 HOH HOH . D 4 HOH A 55 455 55 HOH HOH . D 4 HOH A 56 456 56 HOH HOH . D 4 HOH A 57 457 57 HOH HOH . D 4 HOH A 58 458 58 HOH HOH . D 4 HOH A 59 459 59 HOH HOH . D 4 HOH A 60 460 60 HOH HOH . D 4 HOH A 61 461 61 HOH HOH . D 4 HOH A 62 462 62 HOH HOH . D 4 HOH A 63 463 63 HOH HOH . D 4 HOH A 64 464 64 HOH HOH . D 4 HOH A 65 465 65 HOH HOH . D 4 HOH A 66 466 66 HOH HOH . D 4 HOH A 67 467 67 HOH HOH . D 4 HOH A 68 468 68 HOH HOH . D 4 HOH A 69 469 69 HOH HOH . D 4 HOH A 70 470 70 HOH HOH . D 4 HOH A 71 471 71 HOH HOH . D 4 HOH A 72 472 72 HOH HOH . D 4 HOH A 73 473 73 HOH HOH . D 4 HOH A 74 474 74 HOH HOH . D 4 HOH A 75 475 75 HOH HOH . D 4 HOH A 76 476 76 HOH HOH . D 4 HOH A 77 477 77 HOH HOH . D 4 HOH A 78 478 78 HOH HOH . D 4 HOH A 79 479 79 HOH HOH . D 4 HOH A 80 480 80 HOH HOH . D 4 HOH A 81 481 81 HOH HOH . D 4 HOH A 82 482 82 HOH HOH . D 4 HOH A 83 483 83 HOH HOH . D 4 HOH A 84 484 84 HOH HOH . D 4 HOH A 85 485 85 HOH HOH . D 4 HOH A 86 486 86 HOH HOH . D 4 HOH A 87 487 87 HOH HOH . D 4 HOH A 88 488 88 HOH HOH . D 4 HOH A 89 489 89 HOH HOH . D 4 HOH A 90 490 90 HOH HOH . D 4 HOH A 91 491 91 HOH HOH . D 4 HOH A 92 492 92 HOH HOH . D 4 HOH A 93 493 93 HOH HOH . D 4 HOH A 94 494 94 HOH HOH . D 4 HOH A 95 495 95 HOH HOH . D 4 HOH A 96 496 96 HOH HOH . D 4 HOH A 97 497 97 HOH HOH . D 4 HOH A 98 498 98 HOH HOH . D 4 HOH A 99 499 99 HOH HOH . D 4 HOH A 100 500 100 HOH HOH . D 4 HOH A 101 501 101 HOH HOH . D 4 HOH A 102 502 102 HOH HOH . D 4 HOH A 103 503 103 HOH HOH . D 4 HOH A 104 504 104 HOH HOH . D 4 HOH A 105 505 105 HOH HOH . D 4 HOH A 106 506 106 HOH HOH . D 4 HOH A 107 507 107 HOH HOH . D 4 HOH A 108 508 108 HOH HOH . D 4 HOH A 109 509 109 HOH HOH . D 4 HOH A 110 510 110 HOH HOH . D 4 HOH A 111 511 111 HOH HOH . D 4 HOH A 112 512 112 HOH HOH . D 4 HOH A 113 513 113 HOH HOH . D 4 HOH A 114 514 114 HOH HOH . D 4 HOH A 115 515 115 HOH HOH . D 4 HOH A 116 516 116 HOH HOH . D 4 HOH A 117 517 117 HOH HOH . D 4 HOH A 118 518 118 HOH HOH . D 4 HOH A 119 519 119 HOH HOH . D 4 HOH A 120 520 120 HOH HOH . D 4 HOH A 121 521 121 HOH HOH . D 4 HOH A 122 522 122 HOH HOH . D 4 HOH A 123 523 123 HOH HOH . D 4 HOH A 124 524 124 HOH HOH . D 4 HOH A 125 525 125 HOH HOH . D 4 HOH A 126 526 126 HOH HOH . D 4 HOH A 127 527 127 HOH HOH . D 4 HOH A 128 528 128 HOH HOH . D 4 HOH A 129 529 129 HOH HOH . D 4 HOH A 130 530 130 HOH HOH . D 4 HOH A 131 531 131 HOH HOH . D 4 HOH A 132 532 132 HOH HOH . D 4 HOH A 133 533 133 HOH HOH . D 4 HOH A 134 534 134 HOH HOH . D 4 HOH A 135 535 135 HOH HOH . D 4 HOH A 136 536 136 HOH HOH . D 4 HOH A 137 537 137 HOH HOH . D 4 HOH A 138 538 138 HOH HOH . D 4 HOH A 139 539 139 HOH HOH . D 4 HOH A 140 540 140 HOH HOH . D 4 HOH A 141 541 141 HOH HOH . D 4 HOH A 142 542 142 HOH HOH . D 4 HOH A 143 543 143 HOH HOH . D 4 HOH A 144 544 144 HOH HOH . D 4 HOH A 145 545 145 HOH HOH . D 4 HOH A 146 546 146 HOH HOH . D 4 HOH A 147 547 147 HOH HOH . D 4 HOH A 148 548 148 HOH HOH . D 4 HOH A 149 549 149 HOH HOH . D 4 HOH A 150 550 150 HOH HOH . D 4 HOH A 151 551 151 HOH HOH . D 4 HOH A 152 552 152 HOH HOH . D 4 HOH A 153 553 153 HOH HOH . D 4 HOH A 154 554 154 HOH HOH . D 4 HOH A 155 555 155 HOH HOH . D 4 HOH A 156 556 156 HOH HOH . D 4 HOH A 157 557 157 HOH HOH . D 4 HOH A 158 558 158 HOH HOH . D 4 HOH A 159 559 159 HOH HOH . D 4 HOH A 160 560 160 HOH HOH . D 4 HOH A 161 561 161 HOH HOH . D 4 HOH A 162 562 162 HOH HOH . D 4 HOH A 163 563 163 HOH HOH . D 4 HOH A 164 564 164 HOH HOH . D 4 HOH A 165 565 165 HOH HOH . D 4 HOH A 166 566 166 HOH HOH . D 4 HOH A 167 567 167 HOH HOH . D 4 HOH A 168 568 168 HOH HOH . D 4 HOH A 169 569 169 HOH HOH . D 4 HOH A 170 570 170 HOH HOH . D 4 HOH A 171 571 171 HOH HOH . D 4 HOH A 172 572 172 HOH HOH . D 4 HOH A 173 573 173 HOH HOH . D 4 HOH A 174 574 174 HOH HOH . D 4 HOH A 175 575 175 HOH HOH . D 4 HOH A 176 576 176 HOH HOH . D 4 HOH A 177 577 177 HOH HOH . D 4 HOH A 178 578 178 HOH HOH . D 4 HOH A 179 579 179 HOH HOH . D 4 HOH A 180 580 180 HOH HOH . D 4 HOH A 181 581 181 HOH HOH . D 4 HOH A 182 582 182 HOH HOH . D 4 HOH A 183 583 183 HOH HOH . D 4 HOH A 184 584 184 HOH HOH . D 4 HOH A 185 585 185 HOH HOH . D 4 HOH A 186 586 186 HOH HOH . D 4 HOH A 187 587 187 HOH HOH . D 4 HOH A 188 588 188 HOH HOH . D 4 HOH A 189 589 189 HOH HOH . D 4 HOH A 190 590 190 HOH HOH . D 4 HOH A 191 591 191 HOH HOH . D 4 HOH A 192 592 192 HOH HOH . D 4 HOH A 193 593 193 HOH HOH . D 4 HOH A 194 594 194 HOH HOH . D 4 HOH A 195 595 195 HOH HOH . D 4 HOH A 196 596 196 HOH HOH . D 4 HOH A 197 597 197 HOH HOH . D 4 HOH A 198 598 198 HOH HOH . D 4 HOH A 199 599 199 HOH HOH . D 4 HOH A 200 600 200 HOH HOH . D 4 HOH A 201 601 201 HOH HOH . D 4 HOH A 202 602 202 HOH HOH . D 4 HOH A 203 603 203 HOH HOH . D 4 HOH A 204 604 204 HOH HOH . D 4 HOH A 205 605 205 HOH HOH . D 4 HOH A 206 606 206 HOH HOH . D 4 HOH A 207 607 207 HOH HOH . D 4 HOH A 208 608 208 HOH HOH . D 4 HOH A 209 609 209 HOH HOH . D 4 HOH A 210 610 210 HOH HOH . D 4 HOH A 211 611 211 HOH HOH . D 4 HOH A 212 612 212 HOH HOH . D 4 HOH A 213 613 213 HOH HOH . D 4 HOH A 214 614 214 HOH HOH . D 4 HOH A 215 615 215 HOH HOH . D 4 HOH A 216 616 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 1QK . . . C 3 56.233 79.793 27.747 1 17.06 ? C10 1QK 302 A 1 HETATM 2 N N12 1QK . . . C 3 57.793 78.356 29.148 1 19.42 ? N12 1QK 302 A 1 HETATM 3 C C13 1QK . . . C 3 58.905 79.195 28.861 1 19.7 ? C13 1QK 302 A 1 HETATM 4 C C15 1QK . . . C 3 58.684 79.984 31.27 1 24.15 ? C15 1QK 302 A 1 HETATM 5 C C17 1QK . . . C 3 58.764 82.434 31.863 1 30.83 ? C17 1QK 302 A 1 HETATM 6 C C22 1QK . . . C 3 55.564 81.946 25.851 1 20.13 ? C22 1QK 302 A 1 HETATM 7 C C24 1QK . . . C 3 53.774 83.675 25.791 1 23.87 ? C24 1QK 302 A 1 HETATM 8 C C26 1QK . . . C 3 53.17 81.422 25.961 1 15.58 ? C26 1QK 302 A 1 HETATM 9 C C28 1QK . . . C 3 53.137 79.416 24.266 1 20.29 ? C28 1QK 302 A 1 HETATM 10 C C01 1QK . . . C 3 52.092 75.409 26.652 1 17.88 ? C01 1QK 302 A 1 HETATM 11 C C02 1QK . . . C 3 52.101 76.284 27.91 1 17.63 ? C02 1QK 302 A 1 HETATM 12 C C03 1QK . . . C 3 53.531 76.595 28.384 1 15.8 ? C03 1QK 302 A 1 HETATM 13 C C04 1QK . . . C 3 54.336 75.77 29.146 1 18.13 ? C04 1QK 302 A 1 HETATM 14 N N05 1QK . . . C 3 55.555 76.395 29.327 1 13.11 ? N05 1QK 302 A 1 HETATM 15 N N06 1QK . . . C 3 55.494 77.611 28.654 1 17.19 ? N06 1QK 302 A 1 HETATM 16 C C07 1QK . . . C 3 54.273 77.721 28.057 1 16.4 ? C07 1QK 302 A 1 HETATM 17 N N08 1QK . . . C 3 53.915 78.92 27.295 1 16.61 ? N08 1QK 302 A 1 HETATM 18 C C09 1QK . . . C 3 54.926 79.901 27.136 1 14.4 ? C09 1QK 302 A 1 HETATM 19 C C11 1QK . . . C 3 56.525 78.634 28.505 1 15.21 ? C11 1QK 302 A 1 HETATM 20 C C14 1QK . . . C 3 58.887 80.336 29.858 1 25.42 ? C14 1QK 302 A 1 HETATM 21 C C16 1QK . . . C 3 58.622 81.039 32.285 1 29.01 ? C16 1QK 302 A 1 HETATM 22 N N18 1QK . . . C 3 58.965 82.776 30.432 1 34.06 1 N18 1QK 302 A 1 HETATM 23 C C19 1QK . . . C 3 59.018 81.723 29.407 1 28.4 ? C19 1QK 302 A 1 HETATM 24 O O20 1QK . . . C 3 59.075 83.961 30.096 1 51.4 -1 O20 1QK 302 A 1 HETATM 25 N N21 1QK . . . C 3 54.541 81.045 26.374 1 15.08 ? N21 1QK 302 A 1 HETATM 26 C C23 1QK . . . C 3 55.179 83.378 26.091 1 16.47 ? C23 1QK 302 A 1 HETATM 27 C C25 1QK . . . C 3 52.887 82.77 26.521 1 18.81 ? C25 1QK 302 A 1 HETATM 28 C C27 1QK . . . C 3 52.863 80.863 24.596 1 16.04 ? C27 1QK 302 A 1 HETATM 29 O O29 1QK . . . C 3 52.424 78.511 25.099 1 19.59 ? O29 1QK 302 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #