data_4KD4
#
_model_server_result.job_id            nbv68E_arf6-uELnDq22Gg 
_model_server_result.datetime_utc      '2024-10-11 10:25:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kd4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    4KD4 
#
_exptl.entry_id    4KD4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4R)-2-METHYLPENTANE-2,4-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4KD4 
_cell.length_a            47.64 
_cell.length_b            47.64 
_cell.length_c            62.806 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KD4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 21 A ASP 21 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc2 A OD1 ASP 40 A ASP 40 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? 
metalc ? metalc4 B CA CA . A CA 201 1_555 C O6P THP . A THP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? 
metalc ? metalc5 B CA CA . A CA 201 1_555 F O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? 
metalc ? metalc6 B CA CA . A CA 201 1_555 F O HOH . A HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MRD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4R)-2-METHYLPENTANE-2,4-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MRD sing 224 n n 
C1 H1C1 MRD sing 225 n n 
C1 H1C2 MRD sing 226 n n 
C1 H1C3 MRD sing 227 n n 
C2 O2 MRD sing 228 n n 
C2 CM MRD sing 229 n n 
C2 C3 MRD sing 230 n n 
O2 H2 MRD sing 231 n n 
CM HMC1 MRD sing 232 n n 
CM HMC2 MRD sing 233 n n 
CM HMC3 MRD sing 234 n n 
C3 C4 MRD sing 235 n n 
C3 H3C1 MRD sing 236 n n 
C3 H3C2 MRD sing 237 n n 
C4 O4 MRD sing 238 n n 
C4 C5 MRD sing 239 n n 
C4 H4 MRD sing 240 n n 
O4 HA MRD sing 241 n n 
C5 H5C1 MRD sing 242 n n 
C5 H5C2 MRD sing 243 n n 
C5 H5C3 MRD sing 244 n n 
#
_atom_sites.entry_id                     4KD4 
_atom_sites.fract_transf_matrix[1][1]    0.020991 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020991 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015922 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 201 1 CA CA . 
C 3 THP A 1 202 1 THP THP . 
D 4 MRD A 1 203 1 MRD MRD . 
E 5 PO4 A 1 204 1 PO4 PO4 . 
F 6 HOH A 1 301 1 HOH HOH . 
F 6 HOH A 2 302 2 HOH HOH . 
F 6 HOH A 3 303 3 HOH HOH . 
F 6 HOH A 4 304 4 HOH HOH . 
F 6 HOH A 5 305 5 HOH HOH . 
F 6 HOH A 6 306 6 HOH HOH . 
F 6 HOH A 7 307 7 HOH HOH . 
F 6 HOH A 8 308 8 HOH HOH . 
F 6 HOH A 9 309 9 HOH HOH . 
F 6 HOH A 10 310 10 HOH HOH . 
F 6 HOH A 11 311 11 HOH HOH . 
F 6 HOH A 12 312 12 HOH HOH . 
F 6 HOH A 13 313 13 HOH HOH . 
F 6 HOH A 14 314 14 HOH HOH . 
F 6 HOH A 15 315 15 HOH HOH . 
F 6 HOH A 16 316 16 HOH HOH . 
F 6 HOH A 17 317 17 HOH HOH . 
F 6 HOH A 18 318 18 HOH HOH . 
F 6 HOH A 19 319 19 HOH HOH . 
F 6 HOH A 20 320 20 HOH HOH . 
F 6 HOH A 21 321 21 HOH HOH . 
F 6 HOH A 22 322 22 HOH HOH . 
F 6 HOH A 23 323 23 HOH HOH . 
F 6 HOH A 24 324 24 HOH HOH . 
F 6 HOH A 25 325 25 HOH HOH . 
F 6 HOH A 26 326 26 HOH HOH . 
F 6 HOH A 27 327 27 HOH HOH . 
F 6 HOH A 28 328 28 HOH HOH . 
F 6 HOH A 29 329 29 HOH HOH . 
F 6 HOH A 30 330 30 HOH HOH . 
F 6 HOH A 31 331 31 HOH HOH . 
F 6 HOH A 32 332 32 HOH HOH . 
F 6 HOH A 33 333 33 HOH HOH . 
F 6 HOH A 34 334 34 HOH HOH . 
F 6 HOH A 35 335 35 HOH HOH . 
F 6 HOH A 36 336 36 HOH HOH . 
F 6 HOH A 37 337 37 HOH HOH . 
F 6 HOH A 38 338 38 HOH HOH . 
F 6 HOH A 39 339 39 HOH HOH . 
F 6 HOH A 40 340 40 HOH HOH . 
F 6 HOH A 41 341 41 HOH HOH . 
F 6 HOH A 42 342 43 HOH HOH . 
F 6 HOH A 43 343 44 HOH HOH . 
F 6 HOH A 44 344 45 HOH HOH . 
F 6 HOH A 45 345 46 HOH HOH . 
F 6 HOH A 46 346 47 HOH HOH . 
F 6 HOH A 47 347 48 HOH HOH . 
F 6 HOH A 48 348 49 HOH HOH . 
F 6 HOH A 49 349 50 HOH HOH . 
F 6 HOH A 50 350 51 HOH HOH . 
F 6 HOH A 51 351 53 HOH HOH . 
F 6 HOH A 52 352 54 HOH HOH . 
F 6 HOH A 53 353 56 HOH HOH . 
F 6 HOH A 54 354 57 HOH HOH . 
F 6 HOH A 55 355 59 HOH HOH . 
F 6 HOH A 56 356 60 HOH HOH . 
F 6 HOH A 57 357 62 HOH HOH . 
F 6 HOH A 58 358 63 HOH HOH . 
F 6 HOH A 59 359 67 HOH HOH . 
F 6 HOH A 60 360 69 HOH HOH . 
F 6 HOH A 61 361 70 HOH HOH . 
F 6 HOH A 62 362 71 HOH HOH . 
F 6 HOH A 63 363 72 HOH HOH . 
F 6 HOH A 64 364 73 HOH HOH . 
F 6 HOH A 65 365 75 HOH HOH . 
F 6 HOH A 66 366 77 HOH HOH . 
F 6 HOH A 67 367 78 HOH HOH . 
F 6 HOH A 68 368 79 HOH HOH . 
F 6 HOH A 69 369 80 HOH HOH . 
F 6 HOH A 70 370 81 HOH HOH . 
F 6 HOH A 71 371 82 HOH HOH . 
F 6 HOH A 72 372 83 HOH HOH . 
F 6 HOH A 73 373 84 HOH HOH . 
F 6 HOH A 74 374 85 HOH HOH . 
F 6 HOH A 75 375 86 HOH HOH . 
F 6 HOH A 76 376 87 HOH HOH . 
F 6 HOH A 77 377 88 HOH HOH . 
F 6 HOH A 78 378 89 HOH HOH . 
F 6 HOH A 79 379 90 HOH HOH . 
F 6 HOH A 80 380 91 HOH HOH . 
F 6 HOH A 81 381 92 HOH HOH . 
F 6 HOH A 82 382 93 HOH HOH . 
F 6 HOH A 83 383 94 HOH HOH . 
F 6 HOH A 84 384 95 HOH HOH . 
F 6 HOH A 85 385 96 HOH HOH . 
F 6 HOH A 86 386 97 HOH HOH . 
F 6 HOH A 87 387 98 HOH HOH . 
F 6 HOH A 88 388 99 HOH HOH . 
F 6 HOH A 89 389 100 HOH HOH . 
F 6 HOH A 90 390 101 HOH HOH . 
F 6 HOH A 91 391 102 HOH HOH . 
F 6 HOH A 92 392 103 HOH HOH . 
F 6 HOH A 93 393 104 HOH HOH . 
F 6 HOH A 94 394 105 HOH HOH . 
F 6 HOH A 95 395 106 HOH HOH . 
F 6 HOH A 96 396 107 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MRD . . . D 4 -17.468 1.933 17.164 1 42.31 ? C1 MRD 203 A 1 
HETATM 2 C C2 MRD . . . D 4 -16.404 1.054 16.505 1 40.45 ? C2 MRD 203 A 1 
HETATM 3 O O2 MRD . . . D 4 -15.709 1.742 15.417 1 34.98 ? O2 MRD 203 A 1 
HETATM 4 C CM MRD . . . D 4 -15.466 0.629 17.63 1 34.36 ? CM MRD 203 A 1 
HETATM 5 C C3 MRD . . . D 4 -16.998 -0.184 15.841 1 43.83 ? C3 MRD 203 A 1 
HETATM 6 C C4 MRD . . . D 4 -17.41 -1.19 16.909 1 54.07 ? C4 MRD 203 A 1 
HETATM 7 O O4 MRD . . . D 4 -16.68 -2.398 16.698 1 56.77 ? O4 MRD 203 A 1 
HETATM 8 C C5 MRD . . . D 4 -18.901 -1.459 16.817 1 54.84 ? C5 MRD 203 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           8 
#