data_4KD7 # _model_server_result.job_id WVNqcA_yyFDu9iZZ0NJ9cQ _model_server_result.datetime_utc '2024-11-08 18:04:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kd7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4KD7 # _exptl.entry_id 4KD7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KD7 _cell.length_a 105.258 _cell.length_b 105.249 _cell.length_c 144.684 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KD7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 287 n n PA O2A NDP sing 288 n n PA O5B NDP sing 289 n n PA O3 NDP sing 290 n n O2A HOA2 NDP sing 291 n n O5B C5B NDP sing 292 n n C5B C4B NDP sing 293 n n C5B H51A NDP sing 294 n n C5B H52A NDP sing 295 n n C4B O4B NDP sing 296 n n C4B C3B NDP sing 297 n n C4B H4B NDP sing 298 n n O4B C1B NDP sing 299 n n C3B O3B NDP sing 300 n n C3B C2B NDP sing 301 n n C3B H3B NDP sing 302 n n O3B HO3A NDP sing 303 n n C2B O2B NDP sing 304 n n C2B C1B NDP sing 305 n n C2B H2B NDP sing 306 n n O2B P2B NDP sing 307 n n C1B N9A NDP sing 308 n n C1B H1B NDP sing 309 n n N9A C8A NDP sing 310 n y N9A C4A NDP sing 311 n y C8A N7A NDP doub 312 n y C8A H8A NDP sing 313 n n N7A C5A NDP sing 314 n y C5A C6A NDP sing 315 n y C5A C4A NDP doub 316 n y C6A N6A NDP sing 317 n n C6A N1A NDP doub 318 n y N6A H61A NDP sing 319 n n N6A H62A NDP sing 320 n n N1A C2A NDP sing 321 n y C2A N3A NDP doub 322 n y C2A H2A NDP sing 323 n n N3A C4A NDP sing 324 n y O3 PN NDP sing 325 n n PN O1N NDP doub 326 n n PN O2N NDP sing 327 n n PN O5D NDP sing 328 n n O2N H21N NDP sing 329 n n O5D C5D NDP sing 330 n n C5D C4D NDP sing 331 n n C5D H51N NDP sing 332 n n C5D H52N NDP sing 333 n n C4D O4D NDP sing 334 n n C4D C3D NDP sing 335 n n C4D H4D NDP sing 336 n n O4D C1D NDP sing 337 n n C3D O3D NDP sing 338 n n C3D C2D NDP sing 339 n n C3D H3D NDP sing 340 n n O3D HO3N NDP sing 341 n n C2D O2D NDP sing 342 n n C2D C1D NDP sing 343 n n C2D H2D NDP sing 344 n n O2D HO2N NDP sing 345 n n C1D N1N NDP sing 346 n n C1D H1D NDP sing 347 n n N1N C2N NDP sing 348 n n N1N C6N NDP sing 349 n n C2N C3N NDP doub 350 n n C2N H2N NDP sing 351 n n C3N C7N NDP sing 352 n n C3N C4N NDP sing 353 n n C7N O7N NDP doub 354 n n C7N N7N NDP sing 355 n n N7N H71N NDP sing 356 n n N7N H72N NDP sing 357 n n C4N C5N NDP sing 358 n n C4N H41N NDP sing 359 n n C4N H42N NDP sing 360 n n C5N C6N NDP doub 361 n n C5N H5N NDP sing 362 n n C6N H6N NDP sing 363 n n P2B O1X NDP doub 364 n n P2B O2X NDP sing 365 n n P2B O3X NDP sing 366 n n O2X HOP2 NDP sing 367 n n O3X HOP3 NDP sing 368 n n # _atom_sites.entry_id 4KD7 _atom_sites.fract_transf_matrix[1][1] 0.0095 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 201 207 NDP NAP . D 3 9DR A 1 202 1 9DR 9DR . E 4 SO4 A 1 203 3 SO4 SO4 . F 4 SO4 A 1 204 1 SO4 SO4 . G 2 NDP B 1 201 207 NDP NAP . H 3 9DR B 1 202 1 9DR 9DR . I 4 SO4 B 1 203 1 SO4 SO4 . J 4 SO4 B 1 204 2 SO4 SO4 . K 5 HOH A 1 301 1 HOH HOH . K 5 HOH A 2 302 2 HOH HOH . K 5 HOH A 3 303 3 HOH HOH . K 5 HOH A 4 304 4 HOH HOH . K 5 HOH A 5 305 7 HOH HOH . K 5 HOH A 6 306 8 HOH HOH . K 5 HOH A 7 307 10 HOH HOH . K 5 HOH A 8 308 13 HOH HOH . K 5 HOH A 9 309 15 HOH HOH . K 5 HOH A 10 310 16 HOH HOH . K 5 HOH A 11 311 17 HOH HOH . K 5 HOH A 12 312 18 HOH HOH . K 5 HOH A 13 313 23 HOH HOH . K 5 HOH A 14 314 25 HOH HOH . K 5 HOH A 15 315 29 HOH HOH . K 5 HOH A 16 316 35 HOH HOH . K 5 HOH A 17 317 36 HOH HOH . K 5 HOH A 18 318 41 HOH HOH . K 5 HOH A 19 319 44 HOH HOH . K 5 HOH A 20 320 47 HOH HOH . K 5 HOH A 21 321 49 HOH HOH . K 5 HOH A 22 322 51 HOH HOH . K 5 HOH A 23 323 323 HOH HOH . K 5 HOH A 24 324 54 HOH HOH . K 5 HOH A 25 325 57 HOH HOH . K 5 HOH A 26 326 60 HOH HOH . K 5 HOH A 27 327 62 HOH HOH . K 5 HOH A 28 328 64 HOH HOH . K 5 HOH A 29 329 65 HOH HOH . K 5 HOH A 30 330 66 HOH HOH . K 5 HOH A 31 331 67 HOH HOH . K 5 HOH A 32 332 70 HOH HOH . K 5 HOH A 33 333 71 HOH HOH . K 5 HOH A 34 334 73 HOH HOH . K 5 HOH A 35 335 76 HOH HOH . K 5 HOH A 36 336 77 HOH HOH . K 5 HOH A 37 337 79 HOH HOH . K 5 HOH A 38 338 81 HOH HOH . K 5 HOH A 39 339 82 HOH HOH . K 5 HOH A 40 340 83 HOH HOH . K 5 HOH A 41 341 84 HOH HOH . K 5 HOH A 42 342 89 HOH HOH . K 5 HOH A 43 343 97 HOH HOH . K 5 HOH A 44 344 100 HOH HOH . K 5 HOH A 45 345 101 HOH HOH . K 5 HOH A 46 346 102 HOH HOH . K 5 HOH A 47 347 104 HOH HOH . K 5 HOH A 48 348 105 HOH HOH . K 5 HOH A 49 349 106 HOH HOH . K 5 HOH A 50 350 108 HOH HOH . K 5 HOH A 51 351 115 HOH HOH . K 5 HOH A 52 352 118 HOH HOH . K 5 HOH A 53 353 119 HOH HOH . K 5 HOH A 54 354 121 HOH HOH . K 5 HOH A 55 355 123 HOH HOH . K 5 HOH A 56 356 124 HOH HOH . K 5 HOH A 57 357 126 HOH HOH . K 5 HOH A 58 358 128 HOH HOH . K 5 HOH A 59 359 129 HOH HOH . K 5 HOH A 60 360 132 HOH HOH . K 5 HOH A 61 361 133 HOH HOH . K 5 HOH A 62 362 135 HOH HOH . K 5 HOH A 63 363 136 HOH HOH . L 5 HOH B 1 301 5 HOH HOH . L 5 HOH B 2 302 6 HOH HOH . L 5 HOH B 3 303 9 HOH HOH . L 5 HOH B 4 304 11 HOH HOH . L 5 HOH B 5 305 12 HOH HOH . L 5 HOH B 6 306 14 HOH HOH . L 5 HOH B 7 307 19 HOH HOH . L 5 HOH B 8 308 20 HOH HOH . L 5 HOH B 9 309 21 HOH HOH . L 5 HOH B 10 310 22 HOH HOH . L 5 HOH B 11 311 24 HOH HOH . L 5 HOH B 12 312 26 HOH HOH . L 5 HOH B 13 313 27 HOH HOH . L 5 HOH B 14 314 28 HOH HOH . L 5 HOH B 15 315 30 HOH HOH . L 5 HOH B 16 316 31 HOH HOH . L 5 HOH B 17 317 32 HOH HOH . L 5 HOH B 18 318 33 HOH HOH . L 5 HOH B 19 319 34 HOH HOH . L 5 HOH B 20 320 37 HOH HOH . L 5 HOH B 21 321 38 HOH HOH . L 5 HOH B 22 322 39 HOH HOH . L 5 HOH B 23 323 40 HOH HOH . L 5 HOH B 24 324 42 HOH HOH . L 5 HOH B 25 325 43 HOH HOH . L 5 HOH B 26 326 45 HOH HOH . L 5 HOH B 27 327 46 HOH HOH . L 5 HOH B 28 328 48 HOH HOH . L 5 HOH B 29 329 50 HOH HOH . L 5 HOH B 30 330 52 HOH HOH . L 5 HOH B 31 331 55 HOH HOH . L 5 HOH B 32 332 56 HOH HOH . L 5 HOH B 33 333 58 HOH HOH . L 5 HOH B 34 334 59 HOH HOH . L 5 HOH B 35 335 61 HOH HOH . L 5 HOH B 36 336 63 HOH HOH . L 5 HOH B 37 337 68 HOH HOH . L 5 HOH B 38 338 69 HOH HOH . L 5 HOH B 39 339 72 HOH HOH . L 5 HOH B 40 340 74 HOH HOH . L 5 HOH B 41 341 75 HOH HOH . L 5 HOH B 42 342 78 HOH HOH . L 5 HOH B 43 343 80 HOH HOH . L 5 HOH B 44 344 85 HOH HOH . L 5 HOH B 45 345 86 HOH HOH . L 5 HOH B 46 346 87 HOH HOH . L 5 HOH B 47 347 88 HOH HOH . L 5 HOH B 48 348 90 HOH HOH . L 5 HOH B 49 349 91 HOH HOH . L 5 HOH B 50 350 92 HOH HOH . L 5 HOH B 51 351 93 HOH HOH . L 5 HOH B 52 352 94 HOH HOH . L 5 HOH B 53 353 95 HOH HOH . L 5 HOH B 54 354 96 HOH HOH . L 5 HOH B 55 355 98 HOH HOH . L 5 HOH B 56 356 99 HOH HOH . L 5 HOH B 57 357 103 HOH HOH . L 5 HOH B 58 358 107 HOH HOH . L 5 HOH B 59 359 109 HOH HOH . L 5 HOH B 60 360 110 HOH HOH . L 5 HOH B 61 361 111 HOH HOH . L 5 HOH B 62 362 112 HOH HOH . L 5 HOH B 63 363 113 HOH HOH . L 5 HOH B 64 364 114 HOH HOH . L 5 HOH B 65 365 116 HOH HOH . L 5 HOH B 66 366 117 HOH HOH . L 5 HOH B 67 367 120 HOH HOH . L 5 HOH B 68 368 122 HOH HOH . L 5 HOH B 69 369 125 HOH HOH . L 5 HOH B 70 370 127 HOH HOH . L 5 HOH B 71 371 130 HOH HOH . L 5 HOH B 72 372 131 HOH HOH . L 5 HOH B 73 373 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 26.092 19.1 20.233 1 29.87 ? PA NDP 201 A 1 HETATM 2 O O1A NDP . . . C 2 25.876 17.969 21.165 1 25.38 ? O1A NDP 201 A 1 HETATM 3 O O2A NDP . . . C 2 25.518 18.831 18.896 1 33.36 ? O2A NDP 201 A 1 HETATM 4 O O5B NDP . . . C 2 25.483 20.444 20.864 1 32.38 ? O5B NDP 201 A 1 HETATM 5 C C5B NDP . . . C 2 25.775 20.762 22.206 1 37.36 ? C5B NDP 201 A 1 HETATM 6 C C4B NDP . . . C 2 24.587 21.522 22.773 1 48.76 ? C4B NDP 201 A 1 HETATM 7 O O4B NDP . . . C 2 23.408 20.81 22.462 1 40.45 ? O4B NDP 201 A 1 HETATM 8 C C3B NDP . . . C 2 24.612 21.684 24.285 1 53.14 ? C3B NDP 201 A 1 HETATM 9 O O3B NDP . . . C 2 25.192 22.919 24.633 1 51.31 ? O3B NDP 201 A 1 HETATM 10 C C2B NDP . . . C 2 23.142 21.672 24.631 1 44.41 ? C2B NDP 201 A 1 HETATM 11 O O2B NDP . . . C 2 22.663 22.97 24.381 1 51.44 ? O2B NDP 201 A 1 HETATM 12 C C1B NDP . . . C 2 22.543 20.763 23.575 1 36.91 ? C1B NDP 201 A 1 HETATM 13 N N9A NDP . . . C 2 22.491 19.357 24.023 1 40.83 ? N9A NDP 201 A 1 HETATM 14 C C8A NDP . . . C 2 23.387 18.382 23.667 1 37.27 ? C8A NDP 201 A 1 HETATM 15 N N7A NDP . . . C 2 23.03 17.218 24.252 1 46.49 ? N7A NDP 201 A 1 HETATM 16 C C5A NDP . . . C 2 21.911 17.427 24.973 1 31.3 ? C5A NDP 201 A 1 HETATM 17 C C6A NDP . . . C 2 21.142 16.574 25.752 1 40.89 ? C6A NDP 201 A 1 HETATM 18 N N6A NDP . . . C 2 21.484 15.294 25.877 1 38.04 ? N6A NDP 201 A 1 HETATM 19 N N1A NDP . . . C 2 20.026 17.064 26.393 1 41.02 ? N1A NDP 201 A 1 HETATM 20 C C2A NDP . . . C 2 19.69 18.394 26.249 1 41.46 ? C2A NDP 201 A 1 HETATM 21 N N3A NDP . . . C 2 20.458 19.237 25.472 1 40.41 ? N3A NDP 201 A 1 HETATM 22 C C4A NDP . . . C 2 21.557 18.764 24.839 1 34.1 ? C4A NDP 201 A 1 HETATM 23 O O3 NDP . . . C 2 27.653 19.475 20.147 1 39.56 ? O3 NDP 201 A 1 HETATM 24 P PN NDP . . . C 2 28.982 18.59 19.968 1 40.21 ? PN NDP 201 A 1 HETATM 25 O O1N NDP . . . C 2 30.143 19.489 20.153 1 55.29 ? O1N NDP 201 A 1 HETATM 26 O O2N NDP . . . C 2 28.841 17.385 20.816 1 38.23 ? O2N NDP 201 A 1 HETATM 27 O O5D NDP . . . C 2 28.951 18.145 18.421 1 54.23 ? O5D NDP 201 A 1 HETATM 28 C C5D NDP . . . C 2 29.188 19.099 17.409 1 42.07 ? C5D NDP 201 A 1 HETATM 29 C C4D NDP . . . C 2 30.478 18.781 16.666 1 49.31 ? C4D NDP 201 A 1 HETATM 30 O O4D NDP . . . C 2 30.537 17.394 16.405 1 58.13 ? O4D NDP 201 A 1 HETATM 31 C C3D NDP . . . C 2 30.49 19.487 15.322 1 48.91 ? C3D NDP 201 A 1 HETATM 32 O O3D NDP . . . C 2 31.802 19.888 15.008 1 46.31 ? O3D NDP 201 A 1 HETATM 33 C C2D NDP . . . C 2 30.037 18.424 14.348 1 49.07 ? C2D NDP 201 A 1 HETATM 34 O O2D NDP . . . C 2 30.672 18.599 13.105 1 43.51 ? O2D NDP 201 A 1 HETATM 35 C C1D NDP . . . C 2 30.502 17.143 15.014 1 49.23 ? C1D NDP 201 A 1 HETATM 36 N N1N NDP . . . C 2 29.601 16.011 14.745 1 47.99 ? N1N NDP 201 A 1 HETATM 37 C C2N NDP . . . C 2 30.081 14.942 14.051 1 48.54 ? C2N NDP 201 A 1 HETATM 38 C C3N NDP . . . C 2 29.275 13.849 13.779 1 40.92 ? C3N NDP 201 A 1 HETATM 39 C C7N NDP . . . C 2 29.911 12.608 13.229 1 31.78 ? C7N NDP 201 A 1 HETATM 40 O O7N NDP . . . C 2 29.159 11.425 13.126 1 29.47 ? O7N NDP 201 A 1 HETATM 41 N N7N NDP . . . C 2 31.186 12.66 12.847 1 32.19 ? N7N NDP 201 A 1 HETATM 42 C C4N NDP . . . C 2 27.961 13.844 14.228 1 46.63 ? C4N NDP 201 A 1 HETATM 43 C C5N NDP . . . C 2 27.484 14.941 14.94 1 36.03 ? C5N NDP 201 A 1 HETATM 44 C C6N NDP . . . C 2 28.315 16.024 15.197 1 43.41 ? C6N NDP 201 A 1 HETATM 45 P P2B NDP . . . C 2 22.272 24.025 25.53 1 34.93 ? P2B NDP 201 A 1 HETATM 46 O O1X NDP . . . C 2 21.616 23.303 26.686 1 34.18 ? O1X NDP 201 A 1 HETATM 47 O O2X NDP . . . C 2 23.517 24.756 25.97 1 47.4 ? O2X NDP 201 A 1 HETATM 48 O O3X NDP . . . C 2 21.319 25.031 24.931 1 34.62 ? O3X NDP 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #