data_4KD7 # _model_server_result.job_id tIFJhtvydJMUedS6L7LMEw _model_server_result.datetime_utc '2024-11-08 18:02:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kd7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 4KD7 # _exptl.entry_id 4KD7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KD7 _cell.length_a 105.258 _cell.length_b 105.249 _cell.length_c 144.684 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KD7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 287 n n PA O2A NDP sing 288 n n PA O5B NDP sing 289 n n PA O3 NDP sing 290 n n O2A HOA2 NDP sing 291 n n O5B C5B NDP sing 292 n n C5B C4B NDP sing 293 n n C5B H51A NDP sing 294 n n C5B H52A NDP sing 295 n n C4B O4B NDP sing 296 n n C4B C3B NDP sing 297 n n C4B H4B NDP sing 298 n n O4B C1B NDP sing 299 n n C3B O3B NDP sing 300 n n C3B C2B NDP sing 301 n n C3B H3B NDP sing 302 n n O3B HO3A NDP sing 303 n n C2B O2B NDP sing 304 n n C2B C1B NDP sing 305 n n C2B H2B NDP sing 306 n n O2B P2B NDP sing 307 n n C1B N9A NDP sing 308 n n C1B H1B NDP sing 309 n n N9A C8A NDP sing 310 n y N9A C4A NDP sing 311 n y C8A N7A NDP doub 312 n y C8A H8A NDP sing 313 n n N7A C5A NDP sing 314 n y C5A C6A NDP sing 315 n y C5A C4A NDP doub 316 n y C6A N6A NDP sing 317 n n C6A N1A NDP doub 318 n y N6A H61A NDP sing 319 n n N6A H62A NDP sing 320 n n N1A C2A NDP sing 321 n y C2A N3A NDP doub 322 n y C2A H2A NDP sing 323 n n N3A C4A NDP sing 324 n y O3 PN NDP sing 325 n n PN O1N NDP doub 326 n n PN O2N NDP sing 327 n n PN O5D NDP sing 328 n n O2N H21N NDP sing 329 n n O5D C5D NDP sing 330 n n C5D C4D NDP sing 331 n n C5D H51N NDP sing 332 n n C5D H52N NDP sing 333 n n C4D O4D NDP sing 334 n n C4D C3D NDP sing 335 n n C4D H4D NDP sing 336 n n O4D C1D NDP sing 337 n n C3D O3D NDP sing 338 n n C3D C2D NDP sing 339 n n C3D H3D NDP sing 340 n n O3D HO3N NDP sing 341 n n C2D O2D NDP sing 342 n n C2D C1D NDP sing 343 n n C2D H2D NDP sing 344 n n O2D HO2N NDP sing 345 n n C1D N1N NDP sing 346 n n C1D H1D NDP sing 347 n n N1N C2N NDP sing 348 n n N1N C6N NDP sing 349 n n C2N C3N NDP doub 350 n n C2N H2N NDP sing 351 n n C3N C7N NDP sing 352 n n C3N C4N NDP sing 353 n n C7N O7N NDP doub 354 n n C7N N7N NDP sing 355 n n N7N H71N NDP sing 356 n n N7N H72N NDP sing 357 n n C4N C5N NDP sing 358 n n C4N H41N NDP sing 359 n n C4N H42N NDP sing 360 n n C5N C6N NDP doub 361 n n C5N H5N NDP sing 362 n n C6N H6N NDP sing 363 n n P2B O1X NDP doub 364 n n P2B O2X NDP sing 365 n n P2B O3X NDP sing 366 n n O2X HOP2 NDP sing 367 n n O3X HOP3 NDP sing 368 n n # _atom_sites.entry_id 4KD7 _atom_sites.fract_transf_matrix[1][1] 0.0095 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 201 207 NDP NAP . D 3 9DR A 1 202 1 9DR 9DR . E 4 SO4 A 1 203 3 SO4 SO4 . F 4 SO4 A 1 204 1 SO4 SO4 . G 2 NDP B 1 201 207 NDP NAP . H 3 9DR B 1 202 1 9DR 9DR . I 4 SO4 B 1 203 1 SO4 SO4 . J 4 SO4 B 1 204 2 SO4 SO4 . K 5 HOH A 1 301 1 HOH HOH . K 5 HOH A 2 302 2 HOH HOH . K 5 HOH A 3 303 3 HOH HOH . K 5 HOH A 4 304 4 HOH HOH . K 5 HOH A 5 305 7 HOH HOH . K 5 HOH A 6 306 8 HOH HOH . K 5 HOH A 7 307 10 HOH HOH . K 5 HOH A 8 308 13 HOH HOH . K 5 HOH A 9 309 15 HOH HOH . K 5 HOH A 10 310 16 HOH HOH . K 5 HOH A 11 311 17 HOH HOH . K 5 HOH A 12 312 18 HOH HOH . K 5 HOH A 13 313 23 HOH HOH . K 5 HOH A 14 314 25 HOH HOH . K 5 HOH A 15 315 29 HOH HOH . K 5 HOH A 16 316 35 HOH HOH . K 5 HOH A 17 317 36 HOH HOH . K 5 HOH A 18 318 41 HOH HOH . K 5 HOH A 19 319 44 HOH HOH . K 5 HOH A 20 320 47 HOH HOH . K 5 HOH A 21 321 49 HOH HOH . K 5 HOH A 22 322 51 HOH HOH . K 5 HOH A 23 323 323 HOH HOH . K 5 HOH A 24 324 54 HOH HOH . K 5 HOH A 25 325 57 HOH HOH . K 5 HOH A 26 326 60 HOH HOH . K 5 HOH A 27 327 62 HOH HOH . K 5 HOH A 28 328 64 HOH HOH . K 5 HOH A 29 329 65 HOH HOH . K 5 HOH A 30 330 66 HOH HOH . K 5 HOH A 31 331 67 HOH HOH . K 5 HOH A 32 332 70 HOH HOH . K 5 HOH A 33 333 71 HOH HOH . K 5 HOH A 34 334 73 HOH HOH . K 5 HOH A 35 335 76 HOH HOH . K 5 HOH A 36 336 77 HOH HOH . K 5 HOH A 37 337 79 HOH HOH . K 5 HOH A 38 338 81 HOH HOH . K 5 HOH A 39 339 82 HOH HOH . K 5 HOH A 40 340 83 HOH HOH . K 5 HOH A 41 341 84 HOH HOH . K 5 HOH A 42 342 89 HOH HOH . K 5 HOH A 43 343 97 HOH HOH . K 5 HOH A 44 344 100 HOH HOH . K 5 HOH A 45 345 101 HOH HOH . K 5 HOH A 46 346 102 HOH HOH . K 5 HOH A 47 347 104 HOH HOH . K 5 HOH A 48 348 105 HOH HOH . K 5 HOH A 49 349 106 HOH HOH . K 5 HOH A 50 350 108 HOH HOH . K 5 HOH A 51 351 115 HOH HOH . K 5 HOH A 52 352 118 HOH HOH . K 5 HOH A 53 353 119 HOH HOH . K 5 HOH A 54 354 121 HOH HOH . K 5 HOH A 55 355 123 HOH HOH . K 5 HOH A 56 356 124 HOH HOH . K 5 HOH A 57 357 126 HOH HOH . K 5 HOH A 58 358 128 HOH HOH . K 5 HOH A 59 359 129 HOH HOH . K 5 HOH A 60 360 132 HOH HOH . K 5 HOH A 61 361 133 HOH HOH . K 5 HOH A 62 362 135 HOH HOH . K 5 HOH A 63 363 136 HOH HOH . L 5 HOH B 1 301 5 HOH HOH . L 5 HOH B 2 302 6 HOH HOH . L 5 HOH B 3 303 9 HOH HOH . L 5 HOH B 4 304 11 HOH HOH . L 5 HOH B 5 305 12 HOH HOH . L 5 HOH B 6 306 14 HOH HOH . L 5 HOH B 7 307 19 HOH HOH . L 5 HOH B 8 308 20 HOH HOH . L 5 HOH B 9 309 21 HOH HOH . L 5 HOH B 10 310 22 HOH HOH . L 5 HOH B 11 311 24 HOH HOH . L 5 HOH B 12 312 26 HOH HOH . L 5 HOH B 13 313 27 HOH HOH . L 5 HOH B 14 314 28 HOH HOH . L 5 HOH B 15 315 30 HOH HOH . L 5 HOH B 16 316 31 HOH HOH . L 5 HOH B 17 317 32 HOH HOH . L 5 HOH B 18 318 33 HOH HOH . L 5 HOH B 19 319 34 HOH HOH . L 5 HOH B 20 320 37 HOH HOH . L 5 HOH B 21 321 38 HOH HOH . L 5 HOH B 22 322 39 HOH HOH . L 5 HOH B 23 323 40 HOH HOH . L 5 HOH B 24 324 42 HOH HOH . L 5 HOH B 25 325 43 HOH HOH . L 5 HOH B 26 326 45 HOH HOH . L 5 HOH B 27 327 46 HOH HOH . L 5 HOH B 28 328 48 HOH HOH . L 5 HOH B 29 329 50 HOH HOH . L 5 HOH B 30 330 52 HOH HOH . L 5 HOH B 31 331 55 HOH HOH . L 5 HOH B 32 332 56 HOH HOH . L 5 HOH B 33 333 58 HOH HOH . L 5 HOH B 34 334 59 HOH HOH . L 5 HOH B 35 335 61 HOH HOH . L 5 HOH B 36 336 63 HOH HOH . L 5 HOH B 37 337 68 HOH HOH . L 5 HOH B 38 338 69 HOH HOH . L 5 HOH B 39 339 72 HOH HOH . L 5 HOH B 40 340 74 HOH HOH . L 5 HOH B 41 341 75 HOH HOH . L 5 HOH B 42 342 78 HOH HOH . L 5 HOH B 43 343 80 HOH HOH . L 5 HOH B 44 344 85 HOH HOH . L 5 HOH B 45 345 86 HOH HOH . L 5 HOH B 46 346 87 HOH HOH . L 5 HOH B 47 347 88 HOH HOH . L 5 HOH B 48 348 90 HOH HOH . L 5 HOH B 49 349 91 HOH HOH . L 5 HOH B 50 350 92 HOH HOH . L 5 HOH B 51 351 93 HOH HOH . L 5 HOH B 52 352 94 HOH HOH . L 5 HOH B 53 353 95 HOH HOH . L 5 HOH B 54 354 96 HOH HOH . L 5 HOH B 55 355 98 HOH HOH . L 5 HOH B 56 356 99 HOH HOH . L 5 HOH B 57 357 103 HOH HOH . L 5 HOH B 58 358 107 HOH HOH . L 5 HOH B 59 359 109 HOH HOH . L 5 HOH B 60 360 110 HOH HOH . L 5 HOH B 61 361 111 HOH HOH . L 5 HOH B 62 362 112 HOH HOH . L 5 HOH B 63 363 113 HOH HOH . L 5 HOH B 64 364 114 HOH HOH . L 5 HOH B 65 365 116 HOH HOH . L 5 HOH B 66 366 117 HOH HOH . L 5 HOH B 67 367 120 HOH HOH . L 5 HOH B 68 368 122 HOH HOH . L 5 HOH B 69 369 125 HOH HOH . L 5 HOH B 70 370 127 HOH HOH . L 5 HOH B 71 371 130 HOH HOH . L 5 HOH B 72 372 131 HOH HOH . L 5 HOH B 73 373 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . G 2 33.557 -26.094 15.91 1 28.78 ? PA NDP 201 B 1 HETATM 2 O O1A NDP . . . G 2 34.625 -25.983 14.888 1 28.33 ? O1A NDP 201 B 1 HETATM 3 O O2A NDP . . . G 2 33.947 -25.478 17.199 1 34.86 ? O2A NDP 201 B 1 HETATM 4 O O5B NDP . . . G 2 32.208 -25.441 15.337 1 38.65 ? O5B NDP 201 B 1 HETATM 5 C C5B NDP . . . G 2 31.769 -25.802 14.047 1 33.59 ? C5B NDP 201 B 1 HETATM 6 C C4B NDP . . . G 2 31.057 -24.595 13.458 1 51.17 ? C4B NDP 201 B 1 HETATM 7 O O4B NDP . . . G 2 31.82 -23.443 13.746 1 44.42 ? O4B NDP 201 B 1 HETATM 8 C C3B NDP . . . G 2 30.886 -24.636 11.948 1 55.83 ? C3B NDP 201 B 1 HETATM 9 O O3B NDP . . . G 2 29.631 -25.18 11.618 1 51.44 ? O3B NDP 201 B 1 HETATM 10 C C2B NDP . . . G 2 30.937 -23.172 11.585 1 47.83 ? C2B NDP 201 B 1 HETATM 11 O O2B NDP . . . G 2 29.654 -22.655 11.841 1 55.57 ? O2B NDP 201 B 1 HETATM 12 C C1B NDP . . . G 2 31.864 -22.581 12.63 1 38.79 ? C1B NDP 201 B 1 HETATM 13 N N9A NDP . . . G 2 33.27 -22.524 12.181 1 40.45 ? N9A NDP 201 B 1 HETATM 14 C C8A NDP . . . G 2 34.256 -23.399 12.551 1 36.35 ? C8A NDP 201 B 1 HETATM 15 N N7A NDP . . . G 2 35.415 -23.034 11.961 1 44.84 ? N7A NDP 201 B 1 HETATM 16 C C5A NDP . . . G 2 35.188 -21.929 11.222 1 32.36 ? C5A NDP 201 B 1 HETATM 17 C C6A NDP . . . G 2 36.025 -21.158 10.429 1 42.41 ? C6A NDP 201 B 1 HETATM 18 N N6A NDP . . . G 2 37.31 -21.481 10.307 1 36.38 ? N6A NDP 201 B 1 HETATM 19 N N1A NDP . . . G 2 35.515 -20.058 9.772 1 39.12 ? N1A NDP 201 B 1 HETATM 20 C C2A NDP . . . G 2 34.18 -19.741 9.913 1 38.51 ? C2A NDP 201 B 1 HETATM 21 N N3A NDP . . . G 2 33.352 -20.511 10.703 1 41.61 ? N3A NDP 201 B 1 HETATM 22 C C4A NDP . . . G 2 33.846 -21.592 11.351 1 36.28 ? C4A NDP 201 B 1 HETATM 23 O O3 NDP . . . G 2 33.111 -27.629 16.084 1 39.61 ? O3 NDP 201 B 1 HETATM 24 P PN NDP . . . G 2 33.94 -29 16.182 1 41.03 ? PN NDP 201 B 1 HETATM 25 O O1N NDP . . . G 2 32.996 -30.123 15.979 1 61.2 ? O1N NDP 201 B 1 HETATM 26 O O2N NDP . . . G 2 35.135 -28.875 15.319 1 37.61 ? O2N NDP 201 B 1 HETATM 27 O O5D NDP . . . G 2 34.423 -29.029 17.716 1 53.98 ? O5D NDP 201 B 1 HETATM 28 C C5D NDP . . . G 2 33.482 -29.25 18.74 1 38.09 ? C5D NDP 201 B 1 HETATM 29 C C4D NDP . . . G 2 33.835 -30.512 19.51 1 50.19 ? C4D NDP 201 B 1 HETATM 30 O O4D NDP . . . G 2 35.225 -30.524 19.768 1 61.37 ? O4D NDP 201 B 1 HETATM 31 C C3D NDP . . . G 2 33.135 -30.502 20.857 1 51.69 ? C3D NDP 201 B 1 HETATM 32 O O3D NDP . . . G 2 32.794 -31.818 21.222 1 36.18 ? O3D NDP 201 B 1 HETATM 33 C C2D NDP . . . G 2 34.187 -29.977 21.803 1 51.33 ? C2D NDP 201 B 1 HETATM 34 O O2D NDP . . . G 2 34.025 -30.539 23.082 1 40.73 ? O2D NDP 201 B 1 HETATM 35 C C1D NDP . . . G 2 35.471 -30.463 21.159 1 50.24 ? C1D NDP 201 B 1 HETATM 36 N N1N NDP . . . G 2 36.603 -29.564 21.432 1 50.89 ? N1N NDP 201 B 1 HETATM 37 C C2N NDP . . . G 2 37.739 -30.102 21.953 1 53.01 ? C2N NDP 201 B 1 HETATM 38 C C3N NDP . . . G 2 38.84 -29.311 22.227 1 41.94 ? C3N NDP 201 B 1 HETATM 39 C C7N NDP . . . G 2 40.003 -29.919 22.949 1 31.63 ? C7N NDP 201 B 1 HETATM 40 O O7N NDP . . . G 2 41.202 -29.195 23.068 1 28.04 ? O7N NDP 201 B 1 HETATM 41 N N7N NDP . . . G 2 39.87 -31.141 23.46 1 32.75 ? N7N NDP 201 B 1 HETATM 42 C C4N NDP . . . G 2 38.783 -27.95 21.963 1 46.87 ? C4N NDP 201 B 1 HETATM 43 C C5N NDP . . . G 2 37.616 -27.415 21.426 1 34.26 ? C5N NDP 201 B 1 HETATM 44 C C6N NDP . . . G 2 36.525 -28.231 21.159 1 44.18 ? C6N NDP 201 B 1 HETATM 45 P P2B NDP . . . G 2 28.588 -22.285 10.697 1 36.17 ? P2B NDP 201 B 1 HETATM 46 O O1X NDP . . . G 2 29.292 -21.608 9.543 1 34.8 ? O1X NDP 201 B 1 HETATM 47 O O2X NDP . . . G 2 27.882 -23.543 10.25 1 51.4 ? O2X NDP 201 B 1 HETATM 48 O O3X NDP . . . G 2 27.563 -21.354 11.298 1 32.65 ? O3X NDP 201 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #