data_4KD7
#
_model_server_result.job_id            hC7fqjCUTThKga5oipHGwA 
_model_server_result.datetime_utc      '2024-11-08 18:20:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kd7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":202}' 
#
_entry.id    4KD7 
#
_exptl.entry_id    4KD7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              359.424 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-ethyl-5-{3-[3-methoxy-5-(pyridin-4-yl)phenyl]prop-1-yn-1-yl}pyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4KD7 
_cell.length_a            105.258 
_cell.length_b            105.249 
_cell.length_c            144.684 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KD7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
_chem_comp.formula           'C21 H21 N5 O' 
_chem_comp.formula_weight    359.424 
_chem_comp.id                9DR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-ethyl-5-{3-[3-methoxy-5-(pyridin-4-yl)phenyl]prop-1-yn-1-yl}pyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 N1 9DR doub 1 n y 
C6 N1 9DR sing 2 n y 
N3 C2 9DR sing 3 n y 
C2 NAC 9DR sing 4 n n 
C4 N3 9DR doub 5 n y 
CAN C4 9DR sing 6 n n 
C4 C5 9DR sing 7 n y 
CAF C5 9DR sing 8 n n 
C5 C6 9DR doub 9 n y 
C6 NAD 9DR sing 10 n n 
CAA CAN 9DR sing 11 n n 
CAA HAA 9DR sing 12 n n 
CAA HAAA 9DR sing 13 n n 
CAA HAAB 9DR sing 14 n n 
OAS CAB 9DR sing 15 n n 
CAB HAB 9DR sing 16 n n 
CAB HABA 9DR sing 17 n n 
CAB HABB 9DR sing 18 n n 
NAC HNAC 9DR sing 19 n n 
NAC HNAA 9DR sing 20 n n 
NAD HNAD 9DR sing 21 n n 
NAD HNAB 9DR sing 22 n n 
CAO CAE 9DR sing 23 n n 
CAE CAF 9DR trip 24 n n 
CAG CAI 9DR doub 25 n y 
CAG NAP 9DR sing 26 n y 
CAG HAG 9DR sing 27 n n 
NAP CAH 9DR doub 28 n y 
CAH CAJ 9DR sing 29 n y 
CAH HAH 9DR sing 30 n n 
CAI CAX 9DR sing 31 n y 
CAI HAI 9DR sing 32 n n 
CAX CAJ 9DR doub 33 n y 
CAJ HAJ 9DR sing 34 n n 
CAW CAK 9DR doub 35 n y 
CAK CAU 9DR sing 36 n y 
CAK HAK 9DR sing 37 n n 
CAY CAL 9DR sing 38 n y 
CAL CAU 9DR doub 39 n y 
CAL HAL 9DR sing 40 n n 
CAM CAW 9DR sing 41 n y 
CAM CAY 9DR doub 42 n y 
CAM HAM 9DR sing 43 n n 
CAN HAN 9DR sing 44 n n 
CAN HANA 9DR sing 45 n n 
CAU CAO 9DR sing 46 n n 
CAO HAO 9DR sing 47 n n 
CAO HAOA 9DR sing 48 n n 
OAS CAW 9DR sing 49 n n 
CAX CAY 9DR sing 50 n n 
#
_atom_sites.entry_id                     4KD7 
_atom_sites.fract_transf_matrix[1][1]    0.0095 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009501 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006912 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 201 207 NDP NAP . 
D 3 9DR A 1 202 1 9DR 9DR . 
E 4 SO4 A 1 203 3 SO4 SO4 . 
F 4 SO4 A 1 204 1 SO4 SO4 . 
G 2 NDP B 1 201 207 NDP NAP . 
H 3 9DR B 1 202 1 9DR 9DR . 
I 4 SO4 B 1 203 1 SO4 SO4 . 
J 4 SO4 B 1 204 2 SO4 SO4 . 
K 5 HOH A 1 301 1 HOH HOH . 
K 5 HOH A 2 302 2 HOH HOH . 
K 5 HOH A 3 303 3 HOH HOH . 
K 5 HOH A 4 304 4 HOH HOH . 
K 5 HOH A 5 305 7 HOH HOH . 
K 5 HOH A 6 306 8 HOH HOH . 
K 5 HOH A 7 307 10 HOH HOH . 
K 5 HOH A 8 308 13 HOH HOH . 
K 5 HOH A 9 309 15 HOH HOH . 
K 5 HOH A 10 310 16 HOH HOH . 
K 5 HOH A 11 311 17 HOH HOH . 
K 5 HOH A 12 312 18 HOH HOH . 
K 5 HOH A 13 313 23 HOH HOH . 
K 5 HOH A 14 314 25 HOH HOH . 
K 5 HOH A 15 315 29 HOH HOH . 
K 5 HOH A 16 316 35 HOH HOH . 
K 5 HOH A 17 317 36 HOH HOH . 
K 5 HOH A 18 318 41 HOH HOH . 
K 5 HOH A 19 319 44 HOH HOH . 
K 5 HOH A 20 320 47 HOH HOH . 
K 5 HOH A 21 321 49 HOH HOH . 
K 5 HOH A 22 322 51 HOH HOH . 
K 5 HOH A 23 323 323 HOH HOH . 
K 5 HOH A 24 324 54 HOH HOH . 
K 5 HOH A 25 325 57 HOH HOH . 
K 5 HOH A 26 326 60 HOH HOH . 
K 5 HOH A 27 327 62 HOH HOH . 
K 5 HOH A 28 328 64 HOH HOH . 
K 5 HOH A 29 329 65 HOH HOH . 
K 5 HOH A 30 330 66 HOH HOH . 
K 5 HOH A 31 331 67 HOH HOH . 
K 5 HOH A 32 332 70 HOH HOH . 
K 5 HOH A 33 333 71 HOH HOH . 
K 5 HOH A 34 334 73 HOH HOH . 
K 5 HOH A 35 335 76 HOH HOH . 
K 5 HOH A 36 336 77 HOH HOH . 
K 5 HOH A 37 337 79 HOH HOH . 
K 5 HOH A 38 338 81 HOH HOH . 
K 5 HOH A 39 339 82 HOH HOH . 
K 5 HOH A 40 340 83 HOH HOH . 
K 5 HOH A 41 341 84 HOH HOH . 
K 5 HOH A 42 342 89 HOH HOH . 
K 5 HOH A 43 343 97 HOH HOH . 
K 5 HOH A 44 344 100 HOH HOH . 
K 5 HOH A 45 345 101 HOH HOH . 
K 5 HOH A 46 346 102 HOH HOH . 
K 5 HOH A 47 347 104 HOH HOH . 
K 5 HOH A 48 348 105 HOH HOH . 
K 5 HOH A 49 349 106 HOH HOH . 
K 5 HOH A 50 350 108 HOH HOH . 
K 5 HOH A 51 351 115 HOH HOH . 
K 5 HOH A 52 352 118 HOH HOH . 
K 5 HOH A 53 353 119 HOH HOH . 
K 5 HOH A 54 354 121 HOH HOH . 
K 5 HOH A 55 355 123 HOH HOH . 
K 5 HOH A 56 356 124 HOH HOH . 
K 5 HOH A 57 357 126 HOH HOH . 
K 5 HOH A 58 358 128 HOH HOH . 
K 5 HOH A 59 359 129 HOH HOH . 
K 5 HOH A 60 360 132 HOH HOH . 
K 5 HOH A 61 361 133 HOH HOH . 
K 5 HOH A 62 362 135 HOH HOH . 
K 5 HOH A 63 363 136 HOH HOH . 
L 5 HOH B 1 301 5 HOH HOH . 
L 5 HOH B 2 302 6 HOH HOH . 
L 5 HOH B 3 303 9 HOH HOH . 
L 5 HOH B 4 304 11 HOH HOH . 
L 5 HOH B 5 305 12 HOH HOH . 
L 5 HOH B 6 306 14 HOH HOH . 
L 5 HOH B 7 307 19 HOH HOH . 
L 5 HOH B 8 308 20 HOH HOH . 
L 5 HOH B 9 309 21 HOH HOH . 
L 5 HOH B 10 310 22 HOH HOH . 
L 5 HOH B 11 311 24 HOH HOH . 
L 5 HOH B 12 312 26 HOH HOH . 
L 5 HOH B 13 313 27 HOH HOH . 
L 5 HOH B 14 314 28 HOH HOH . 
L 5 HOH B 15 315 30 HOH HOH . 
L 5 HOH B 16 316 31 HOH HOH . 
L 5 HOH B 17 317 32 HOH HOH . 
L 5 HOH B 18 318 33 HOH HOH . 
L 5 HOH B 19 319 34 HOH HOH . 
L 5 HOH B 20 320 37 HOH HOH . 
L 5 HOH B 21 321 38 HOH HOH . 
L 5 HOH B 22 322 39 HOH HOH . 
L 5 HOH B 23 323 40 HOH HOH . 
L 5 HOH B 24 324 42 HOH HOH . 
L 5 HOH B 25 325 43 HOH HOH . 
L 5 HOH B 26 326 45 HOH HOH . 
L 5 HOH B 27 327 46 HOH HOH . 
L 5 HOH B 28 328 48 HOH HOH . 
L 5 HOH B 29 329 50 HOH HOH . 
L 5 HOH B 30 330 52 HOH HOH . 
L 5 HOH B 31 331 55 HOH HOH . 
L 5 HOH B 32 332 56 HOH HOH . 
L 5 HOH B 33 333 58 HOH HOH . 
L 5 HOH B 34 334 59 HOH HOH . 
L 5 HOH B 35 335 61 HOH HOH . 
L 5 HOH B 36 336 63 HOH HOH . 
L 5 HOH B 37 337 68 HOH HOH . 
L 5 HOH B 38 338 69 HOH HOH . 
L 5 HOH B 39 339 72 HOH HOH . 
L 5 HOH B 40 340 74 HOH HOH . 
L 5 HOH B 41 341 75 HOH HOH . 
L 5 HOH B 42 342 78 HOH HOH . 
L 5 HOH B 43 343 80 HOH HOH . 
L 5 HOH B 44 344 85 HOH HOH . 
L 5 HOH B 45 345 86 HOH HOH . 
L 5 HOH B 46 346 87 HOH HOH . 
L 5 HOH B 47 347 88 HOH HOH . 
L 5 HOH B 48 348 90 HOH HOH . 
L 5 HOH B 49 349 91 HOH HOH . 
L 5 HOH B 50 350 92 HOH HOH . 
L 5 HOH B 51 351 93 HOH HOH . 
L 5 HOH B 52 352 94 HOH HOH . 
L 5 HOH B 53 353 95 HOH HOH . 
L 5 HOH B 54 354 96 HOH HOH . 
L 5 HOH B 55 355 98 HOH HOH . 
L 5 HOH B 56 356 99 HOH HOH . 
L 5 HOH B 57 357 103 HOH HOH . 
L 5 HOH B 58 358 107 HOH HOH . 
L 5 HOH B 59 359 109 HOH HOH . 
L 5 HOH B 60 360 110 HOH HOH . 
L 5 HOH B 61 361 111 HOH HOH . 
L 5 HOH B 62 362 112 HOH HOH . 
L 5 HOH B 63 363 113 HOH HOH . 
L 5 HOH B 64 364 114 HOH HOH . 
L 5 HOH B 65 365 116 HOH HOH . 
L 5 HOH B 66 366 117 HOH HOH . 
L 5 HOH B 67 367 120 HOH HOH . 
L 5 HOH B 68 368 122 HOH HOH . 
L 5 HOH B 69 369 125 HOH HOH . 
L 5 HOH B 70 370 127 HOH HOH . 
L 5 HOH B 71 371 130 HOH HOH . 
L 5 HOH B 72 372 131 HOH HOH . 
L 5 HOH B 73 373 134 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 9DR . . . H 3 42.654 -27.005 25.069 1 19.93 ? N1 9DR 202 B 1 
HETATM 2 C C2 9DR . . . H 3 42.975 -27.838 26.073 1 19.84 ? C2 9DR 202 B 1 
HETATM 3 N N3 9DR . . . H 3 42.02 -28.41 26.825 1 17.55 ? N3 9DR 202 B 1 
HETATM 4 C C4 9DR . . . H 3 40.724 -28.168 26.6 1 28.38 ? C4 9DR 202 B 1 
HETATM 5 C C5 9DR . . . H 3 40.366 -27.313 25.571 1 23.65 ? C5 9DR 202 B 1 
HETATM 6 C C6 9DR . . . H 3 41.369 -26.737 24.81 1 18.96 ? C6 9DR 202 B 1 
HETATM 7 C CAA 9DR . . . H 3 39.99 -28.396 28.856 1 21.53 ? CAA 9DR 202 B 1 
HETATM 8 C CAB 9DR . . . H 3 32.589 -29.443 28.028 1 50.78 ? CAB 9DR 202 B 1 
HETATM 9 N NAC 9DR . . . H 3 44.253 -28.1 26.325 1 17.7 ? NAC 9DR 202 B 1 
HETATM 10 N NAD 9DR . . . H 3 40.989 -25.922 23.83 1 22.17 ? NAD 9DR 202 B 1 
HETATM 11 C CAE 9DR . . . H 3 38.021 -26.817 25.091 1 30.53 ? CAE 9DR 202 B 1 
HETATM 12 C CAF 9DR . . . H 3 39.021 -27.036 25.304 1 22.49 ? CAF 9DR 202 B 1 
HETATM 13 C CAG 9DR . . . H 3 35.82 -23.499 30.372 1 39.21 ? CAG 9DR 202 B 1 
HETATM 14 C CAH 9DR . . . H 3 34.121 -24.914 31.36 1 40.57 ? CAH 9DR 202 B 1 
HETATM 15 C CAI 9DR . . . H 3 35.837 -24.309 29.244 1 36.25 ? CAI 9DR 202 B 1 
HETATM 16 C CAJ 9DR . . . H 3 34.149 -25.72 30.23 1 38.19 ? CAJ 9DR 202 B 1 
HETATM 17 C CAK 9DR . . . H 3 35.009 -27.887 25.823 1 39.67 ? CAK 9DR 202 B 1 
HETATM 18 C CAL 9DR . . . H 3 35.842 -25.941 26.974 1 29.74 ? CAL 9DR 202 B 1 
HETATM 19 C CAM 9DR . . . H 3 34.186 -27.351 28.013 1 30.83 ? CAM 9DR 202 B 1 
HETATM 20 C CAN 9DR . . . H 3 39.75 -28.766 27.39 1 24.15 ? CAN 9DR 202 B 1 
HETATM 21 C CAO 9DR . . . H 3 36.652 -26.494 24.773 1 39.38 ? CAO 9DR 202 B 1 
HETATM 22 N NAP 9DR . . . H 3 34.959 -23.796 31.436 1 39.04 ? NAP 9DR 202 B 1 
HETATM 23 O OAS 9DR . . . H 3 33.376 -29.285 26.842 1 47.9 ? OAS 9DR 202 B 1 
HETATM 24 C CAU 9DR . . . H 3 35.835 -26.771 25.859 1 32.27 ? CAU 9DR 202 B 1 
HETATM 25 C CAW 9DR . . . H 3 34.181 -28.183 26.898 1 48.44 ? CAW 9DR 202 B 1 
HETATM 26 C CAX 9DR . . . H 3 34.999 -25.417 29.173 1 40.05 ? CAX 9DR 202 B 1 
HETATM 27 C CAY 9DR . . . H 3 35.01 -26.234 28.05 1 40 ? CAY 9DR 202 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#