data_4KEQ # _model_server_result.job_id jGVBKRhFOd2RBTl9nn84tg _model_server_result.datetime_utc '2024-11-22 09:17:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4keq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":308}' # _entry.id 4KEQ # _exptl.entry_id 4KEQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.73 _cell.angle_gamma 90 _cell.entry_id 4KEQ _cell.length_a 84.426 _cell.length_b 39.576 _cell.length_c 84.66 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KEQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 39.39277 0 -74.936809 3 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 96 A HIS 96 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc2 A ND1 HIS 98 A HIS 98 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc3 A NE2 HIS 101 A HIS 101 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc4 A NE2 HIS 185 A HIS 185 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc5 A OD1 ASP 207 A ASP 207 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc6 A OD2 ASP 207 A ASP 207 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc7 A OD2 ASP 207 A ASP 207 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc8 A NE2 HIS 252 A HIS 252 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc9 C ZN ZN . A ZN 302 1_555 L O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 103 n n C1 C2 EDO sing 104 n n C1 H11 EDO sing 105 n n C1 H12 EDO sing 106 n n O1 HO1 EDO sing 107 n n C2 O2 EDO sing 108 n n C2 H21 EDO sing 109 n n C2 H22 EDO sing 110 n n O2 HO2 EDO sing 111 n n # _atom_sites.entry_id 4KEQ _atom_sites.fract_transf_matrix[1][1] 0.011845 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006227 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025268 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 300 ZN ZN . C 2 ZN A 1 302 301 ZN ZN . D 3 5PN A 1 303 302 5PN 5PN . E 3 5PN A 1 304 303 5PN 5PN . F 4 GOL A 1 305 1 GOL GOL . G 4 GOL A 1 306 2 GOL GOL . H 4 GOL A 1 307 3 GOL GOL . I 5 EDO A 1 308 1 EDO EDO . J 5 EDO A 1 309 2 EDO EDO . K 5 EDO A 1 310 3 EDO EDO . L 6 HOH A 1 401 1 HOH HOH . L 6 HOH A 2 402 2 HOH HOH . L 6 HOH A 3 403 3 HOH HOH . L 6 HOH A 4 404 4 HOH HOH . L 6 HOH A 5 405 5 HOH HOH . L 6 HOH A 6 406 6 HOH HOH . L 6 HOH A 7 407 7 HOH HOH . L 6 HOH A 8 408 8 HOH HOH . L 6 HOH A 9 409 9 HOH HOH . L 6 HOH A 10 410 10 HOH HOH . L 6 HOH A 11 411 11 HOH HOH . L 6 HOH A 12 412 12 HOH HOH . L 6 HOH A 13 413 13 HOH HOH . L 6 HOH A 14 414 14 HOH HOH . L 6 HOH A 15 415 15 HOH HOH . L 6 HOH A 16 416 16 HOH HOH . L 6 HOH A 17 417 17 HOH HOH . L 6 HOH A 18 418 18 HOH HOH . L 6 HOH A 19 419 19 HOH HOH . L 6 HOH A 20 420 20 HOH HOH . L 6 HOH A 21 421 21 HOH HOH . L 6 HOH A 22 422 22 HOH HOH . L 6 HOH A 23 423 23 HOH HOH . L 6 HOH A 24 424 24 HOH HOH . L 6 HOH A 25 425 25 HOH HOH . L 6 HOH A 26 426 26 HOH HOH . L 6 HOH A 27 427 27 HOH HOH . L 6 HOH A 28 428 28 HOH HOH . L 6 HOH A 29 429 29 HOH HOH . L 6 HOH A 30 430 30 HOH HOH . L 6 HOH A 31 431 31 HOH HOH . L 6 HOH A 32 432 32 HOH HOH . L 6 HOH A 33 433 33 HOH HOH . L 6 HOH A 34 434 34 HOH HOH . L 6 HOH A 35 435 35 HOH HOH . L 6 HOH A 36 436 36 HOH HOH . L 6 HOH A 37 437 37 HOH HOH . L 6 HOH A 38 438 38 HOH HOH . L 6 HOH A 39 439 39 HOH HOH . L 6 HOH A 40 440 40 HOH HOH . L 6 HOH A 41 441 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 5 -6.066 4.677 -24.963 1 25.05 ? C1 EDO 308 A 1 HETATM 2 O O1 EDO . . . I 5 -4.72 4.681 -25.469 1 23.54 ? O1 EDO 308 A 1 HETATM 3 C C2 EDO . . . I 5 -6.911 5.646 -25.779 1 26.91 ? C2 EDO 308 A 1 HETATM 4 O O2 EDO . . . I 5 -6.5 5.565 -27.147 1 27.93 ? O2 EDO 308 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #