data_4KF6
#
_model_server_result.job_id            atKPcY2YcUEQL5yJXFYIzg 
_model_server_result.datetime_utc      '2024-11-26 12:08:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kf6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    4KF6 
#
_exptl.entry_id    4KF6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              505.668 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S,3R,4E)-3-hydroxy-2-(octanoylamino)octadec-4-en-1-yl dihydrogen phosphate' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4KF6 
_cell.length_a            81.884 
_cell.length_b            122.399 
_cell.length_c            149.99 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KF6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,M 1 1 
B,H,N 2 1 
C,I 3 1 
D,J,O 4 1 
E,K,P 5 1 
F,L 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C26 H52 N O6 P' 
_chem_comp.formula_weight    505.668 
_chem_comp.id                1T9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S,3R,4E)-3-hydroxy-2-(octanoylamino)octadec-4-en-1-yl dihydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAI CAJ 1T9 sing 1 n n 
CAK CAJ 1T9 sing 2 n n 
CAK CAL 1T9 sing 3 n n 
CAM CAL 1T9 sing 4 n n 
CAM CAN 1T9 sing 5 n n 
CAO CAN 1T9 sing 6 n n 
CAO CAP 1T9 sing 7 n n 
CAP CAQ 1T9 sing 8 n n 
CBH CBG 1T9 sing 9 n n 
CBF CBE 1T9 sing 10 n n 
CBF CBG 1T9 sing 11 n n 
CBE CBD 1T9 sing 12 n n 
CAQ CAE 1T9 sing 13 n n 
CBD CBC 1T9 sing 14 n n 
CAE CAD 1T9 doub 15 e n 
CBC CAT 1T9 sing 16 n n 
CAD CAC 1T9 sing 17 n n 
CAT CAU 1T9 sing 18 n n 
CAC OAR 1T9 sing 19 n n 
CAC CAB 1T9 sing 20 n n 
NAW CAU 1T9 sing 21 n n 
NAW CAB 1T9 sing 22 n n 
CAU OAV 1T9 doub 23 n n 
CAB CAA 1T9 sing 24 n n 
CAA OBB 1T9 sing 25 n n 
OBB PAX 1T9 sing 26 n n 
OAY PAX 1T9 doub 27 n n 
OAZ PAX 1T9 sing 28 n n 
PAX OBA 1T9 sing 29 n n 
CAI H1 1T9 sing 30 n n 
CAI H2 1T9 sing 31 n n 
CAJ H4 1T9 sing 32 n n 
CAJ H5 1T9 sing 33 n n 
CAK H6 1T9 sing 34 n n 
CAK H7 1T9 sing 35 n n 
CAL H8 1T9 sing 36 n n 
CAL H9 1T9 sing 37 n n 
CAM H10 1T9 sing 38 n n 
CAM H11 1T9 sing 39 n n 
CAN H12 1T9 sing 40 n n 
CAN H13 1T9 sing 41 n n 
CAO H14 1T9 sing 42 n n 
CAO H15 1T9 sing 43 n n 
CAP H16 1T9 sing 44 n n 
CAP H17 1T9 sing 45 n n 
CAQ H18 1T9 sing 46 n n 
CAQ H19 1T9 sing 47 n n 
CAE H20 1T9 sing 48 n n 
CAD H21 1T9 sing 49 n n 
CAC H22 1T9 sing 50 n n 
OAR H23 1T9 sing 51 n n 
CAB H24 1T9 sing 52 n n 
CAA H25 1T9 sing 53 n n 
CAA H26 1T9 sing 54 n n 
OAZ H27 1T9 sing 55 n n 
OBA H28 1T9 sing 56 n n 
NAW H29 1T9 sing 57 n n 
CAT H30 1T9 sing 58 n n 
CAT H31 1T9 sing 59 n n 
CBC H32 1T9 sing 60 n n 
CBC H33 1T9 sing 61 n n 
CBD H34 1T9 sing 62 n n 
CBD H35 1T9 sing 63 n n 
CBE H36 1T9 sing 64 n n 
CBE H37 1T9 sing 65 n n 
CBF H38 1T9 sing 66 n n 
CBF H39 1T9 sing 67 n n 
CBG H40 1T9 sing 68 n n 
CBG H41 1T9 sing 69 n n 
CBH H42 1T9 sing 70 n n 
CBH H43 1T9 sing 71 n n 
CBH H44 1T9 sing 72 n n 
CAI C1 1T9 sing 73 n n 
C1 C2 1T9 sing 74 n n 
C2 C3 1T9 sing 75 n n 
C3 C4 1T9 sing 76 n n 
C1 H3 1T9 sing 77 n n 
C1 H45 1T9 sing 78 n n 
C2 H46 1T9 sing 79 n n 
C2 H47 1T9 sing 80 n n 
C3 H48 1T9 sing 81 n n 
C3 H49 1T9 sing 82 n n 
C4 H50 1T9 sing 83 n n 
C4 H51 1T9 sing 84 n n 
C4 H52 1T9 sing 85 n n 
#
_atom_sites.entry_id                     4KF6 
_atom_sites.fract_transf_matrix[1][1]    0.012212 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00817 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006667 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 1T9 A 1 301 3 1T9 1T9 . 
H 2 1T9 B 1 301 1 1T9 1T9 . 
I 2 1T9 C 1 301 2 1T9 1T9 . 
J 2 1T9 D 1 301 4 1T9 1T9 . 
K 2 1T9 E 1 301 5 1T9 1T9 . 
L 2 1T9 F 1 301 6 1T9 1T9 . 
M 3 HOH A 1 401 1 HOH HOH . 
M 3 HOH A 2 402 5 HOH HOH . 
M 3 HOH A 3 403 6 HOH HOH . 
M 3 HOH A 4 404 8 HOH HOH . 
N 3 HOH B 1 401 2 HOH HOH . 
N 3 HOH B 2 402 3 HOH HOH . 
O 3 HOH D 1 401 9 HOH HOH . 
P 3 HOH E 1 401 4 HOH HOH . 
P 3 HOH E 2 402 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAK 1T9 . . . H 2 -27.297 -0.679 15.054 1 54.72 ? CAK 1T9 301 B 1 
HETATM 2 C CAL 1T9 . . . H 2 -27.361 -1.936 14.184 1 54.55 ? CAL 1T9 301 B 1 
HETATM 3 C CAM 1T9 . . . H 2 -28.554 -1.836 13.23 1 54.78 ? CAM 1T9 301 B 1 
HETATM 4 C CAN 1T9 . . . H 2 -29.362 -3.134 13.285 1 54.32 ? CAN 1T9 301 B 1 
HETATM 5 C CAO 1T9 . . . H 2 -29.595 -3.65 11.864 1 54.74 ? CAO 1T9 301 B 1 
HETATM 6 C CAP 1T9 . . . H 2 -30.241 -2.549 11.02 1 55.34 ? CAP 1T9 301 B 1 
HETATM 7 C CAQ 1T9 . . . H 2 -30.73 -3.14 9.696 1 55.76 ? CAQ 1T9 301 B 1 
HETATM 8 C CAE 1T9 . . . H 2 -31.332 -2.029 8.833 1 56.57 ? CAE 1T9 301 B 1 
HETATM 9 C CAD 1T9 . . . H 2 -30.347 -1.342 7.885 1 57.18 ? CAD 1T9 301 B 1 
HETATM 10 C CAC 1T9 . . . H 2 -30.949 -0.231 7.022 1 58.11 ? CAC 1T9 301 B 1 
HETATM 11 O OAR 1T9 . . . H 2 -30.053 0.883 6.984 1 58.48 ? OAR 1T9 301 B 1 
HETATM 12 C CAB 1T9 . . . H 2 -31.173 -0.754 5.601 1 58.72 ? CAB 1T9 301 B 1 
HETATM 13 C CAA 1T9 . . . H 2 -31.755 0.363 4.732 1 59.72 ? CAA 1T9 301 B 1 
HETATM 14 O OBB 1T9 . . . H 2 -31.088 1.593 5.027 1 59.92 ? OBB 1T9 301 B 1 
HETATM 15 P PAX 1T9 . . . H 2 -31.836 3.003 4.759 1 61.07 ? PAX 1T9 301 B 1 
HETATM 16 O OAY 1T9 . . . H 2 -33.412 2.644 4.678 1 61.07 ? OAY 1T9 301 B 1 
HETATM 17 O OAZ 1T9 . . . H 2 -31.416 3.434 3.258 1 61.94 ? OAZ 1T9 301 B 1 
HETATM 18 O OBA 1T9 . . . H 2 -31.522 4.033 5.774 1 61.46 ? OBA 1T9 301 B 1 
HETATM 19 N NAW 1T9 . . . H 2 -32.111 -1.885 5.637 1 58.77 ? NAW 1T9 301 B 1 
HETATM 20 C CAU 1T9 . . . H 2 -32.416 -2.59 4.539 1 58.4 ? CAU 1T9 301 B 1 
HETATM 21 O OAV 1T9 . . . H 2 -31.951 -2.361 3.424 1 58.6 ? OAV 1T9 301 B 1 
HETATM 22 C CAT 1T9 . . . H 2 -33.409 -3.733 4.759 1 57.89 ? CAT 1T9 301 B 1 
HETATM 23 C CBC 1T9 . . . H 2 -32.646 -5.051 4.904 1 57.59 ? CBC 1T9 301 B 1 
HETATM 24 C CBD 1T9 . . . H 2 -32.73 -5.534 6.353 1 56.84 ? CBD 1T9 301 B 1 
HETATM 25 C CBE 1T9 . . . H 2 -31.901 -6.81 6.516 1 56.4 ? CBE 1T9 301 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           25 
#