data_4KF6 # _model_server_result.job_id n1qTEMEYUKtiV43fBSJCIw _model_server_result.datetime_utc '2024-11-26 12:06:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kf6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 4KF6 # _exptl.entry_id 4KF6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.668 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3R,4E)-3-hydroxy-2-(octanoylamino)octadec-4-en-1-yl dihydrogen phosphate' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KF6 _cell.length_a 81.884 _cell.length_b 122.399 _cell.length_c 149.99 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KF6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,M 1 1 B,H,N 2 1 C,I 3 1 D,J,O 4 1 E,K,P 5 1 F,L 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C26 H52 N O6 P' _chem_comp.formula_weight 505.668 _chem_comp.id 1T9 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3R,4E)-3-hydroxy-2-(octanoylamino)octadec-4-en-1-yl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAI CAJ 1T9 sing 1 n n CAK CAJ 1T9 sing 2 n n CAK CAL 1T9 sing 3 n n CAM CAL 1T9 sing 4 n n CAM CAN 1T9 sing 5 n n CAO CAN 1T9 sing 6 n n CAO CAP 1T9 sing 7 n n CAP CAQ 1T9 sing 8 n n CBH CBG 1T9 sing 9 n n CBF CBE 1T9 sing 10 n n CBF CBG 1T9 sing 11 n n CBE CBD 1T9 sing 12 n n CAQ CAE 1T9 sing 13 n n CBD CBC 1T9 sing 14 n n CAE CAD 1T9 doub 15 e n CBC CAT 1T9 sing 16 n n CAD CAC 1T9 sing 17 n n CAT CAU 1T9 sing 18 n n CAC OAR 1T9 sing 19 n n CAC CAB 1T9 sing 20 n n NAW CAU 1T9 sing 21 n n NAW CAB 1T9 sing 22 n n CAU OAV 1T9 doub 23 n n CAB CAA 1T9 sing 24 n n CAA OBB 1T9 sing 25 n n OBB PAX 1T9 sing 26 n n OAY PAX 1T9 doub 27 n n OAZ PAX 1T9 sing 28 n n PAX OBA 1T9 sing 29 n n CAI H1 1T9 sing 30 n n CAI H2 1T9 sing 31 n n CAJ H4 1T9 sing 32 n n CAJ H5 1T9 sing 33 n n CAK H6 1T9 sing 34 n n CAK H7 1T9 sing 35 n n CAL H8 1T9 sing 36 n n CAL H9 1T9 sing 37 n n CAM H10 1T9 sing 38 n n CAM H11 1T9 sing 39 n n CAN H12 1T9 sing 40 n n CAN H13 1T9 sing 41 n n CAO H14 1T9 sing 42 n n CAO H15 1T9 sing 43 n n CAP H16 1T9 sing 44 n n CAP H17 1T9 sing 45 n n CAQ H18 1T9 sing 46 n n CAQ H19 1T9 sing 47 n n CAE H20 1T9 sing 48 n n CAD H21 1T9 sing 49 n n CAC H22 1T9 sing 50 n n OAR H23 1T9 sing 51 n n CAB H24 1T9 sing 52 n n CAA H25 1T9 sing 53 n n CAA H26 1T9 sing 54 n n OAZ H27 1T9 sing 55 n n OBA H28 1T9 sing 56 n n NAW H29 1T9 sing 57 n n CAT H30 1T9 sing 58 n n CAT H31 1T9 sing 59 n n CBC H32 1T9 sing 60 n n CBC H33 1T9 sing 61 n n CBD H34 1T9 sing 62 n n CBD H35 1T9 sing 63 n n CBE H36 1T9 sing 64 n n CBE H37 1T9 sing 65 n n CBF H38 1T9 sing 66 n n CBF H39 1T9 sing 67 n n CBG H40 1T9 sing 68 n n CBG H41 1T9 sing 69 n n CBH H42 1T9 sing 70 n n CBH H43 1T9 sing 71 n n CBH H44 1T9 sing 72 n n CAI C1 1T9 sing 73 n n C1 C2 1T9 sing 74 n n C2 C3 1T9 sing 75 n n C3 C4 1T9 sing 76 n n C1 H3 1T9 sing 77 n n C1 H45 1T9 sing 78 n n C2 H46 1T9 sing 79 n n C2 H47 1T9 sing 80 n n C3 H48 1T9 sing 81 n n C3 H49 1T9 sing 82 n n C4 H50 1T9 sing 83 n n C4 H51 1T9 sing 84 n n C4 H52 1T9 sing 85 n n # _atom_sites.entry_id 4KF6 _atom_sites.fract_transf_matrix[1][1] 0.012212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00817 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006667 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 1T9 A 1 301 3 1T9 1T9 . H 2 1T9 B 1 301 1 1T9 1T9 . I 2 1T9 C 1 301 2 1T9 1T9 . J 2 1T9 D 1 301 4 1T9 1T9 . K 2 1T9 E 1 301 5 1T9 1T9 . L 2 1T9 F 1 301 6 1T9 1T9 . M 3 HOH A 1 401 1 HOH HOH . M 3 HOH A 2 402 5 HOH HOH . M 3 HOH A 3 403 6 HOH HOH . M 3 HOH A 4 404 8 HOH HOH . N 3 HOH B 1 401 2 HOH HOH . N 3 HOH B 2 402 3 HOH HOH . O 3 HOH D 1 401 9 HOH HOH . P 3 HOH E 1 401 4 HOH HOH . P 3 HOH E 2 402 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAJ 1T9 . . . J 2 -21.282 6.91 31.978 1 40.22 ? CAJ 1T9 301 D 1 HETATM 2 C CAK 1T9 . . . J 2 -21.339 7.597 33.344 1 40.54 ? CAK 1T9 301 D 1 HETATM 3 C CAL 1T9 . . . J 2 -20.261 8.68 33.416 1 41.86 ? CAL 1T9 301 D 1 HETATM 4 C CAM 1T9 . . . J 2 -19.955 9 34.881 1 42.08 ? CAM 1T9 301 D 1 HETATM 5 C CAN 1T9 . . . J 2 -19.583 10.477 35.015 1 43.46 ? CAN 1T9 301 D 1 HETATM 6 C CAO 1T9 . . . J 2 -18.992 10.732 36.403 1 43.89 ? CAO 1T9 301 D 1 HETATM 7 C CAP 1T9 . . . J 2 -20.012 11.483 37.262 1 43.87 ? CAP 1T9 301 D 1 HETATM 8 C CAQ 1T9 . . . J 2 -19.956 10.957 38.698 1 43.48 ? CAQ 1T9 301 D 1 HETATM 9 C CAE 1T9 . . . J 2 -21.095 11.572 39.512 1 43.19 ? CAE 1T9 301 D 1 HETATM 10 C CAD 1T9 . . . J 2 -21.397 10.868 40.837 1 42.58 ? CAD 1T9 301 D 1 HETATM 11 C CAC 1T9 . . . J 2 -22.536 11.482 41.652 1 42.6 ? CAC 1T9 301 D 1 HETATM 12 O OAR 1T9 . . . J 2 -23.551 10.499 41.87 1 41.49 ? OAR 1T9 301 D 1 HETATM 13 C CAB 1T9 . . . J 2 -21.997 11.968 42.999 1 43.29 ? CAB 1T9 301 D 1 HETATM 14 C CAA 1T9 . . . J 2 -23.133 12.598 43.807 1 43.52 ? CAA 1T9 301 D 1 HETATM 15 O OBB 1T9 . . . J 2 -24.246 11.701 43.846 1 42.46 ? OBB 1T9 301 D 1 HETATM 16 P PAX 1T9 . . . J 2 -25.71 12.207 43.38 1 42.46 ? PAX 1T9 301 D 1 HETATM 17 O OAY 1T9 . . . J 2 -25.742 12.007 41.775 1 42.21 ? OAY 1T9 301 D 1 HETATM 18 O OAZ 1T9 . . . J 2 -25.705 13.808 43.614 1 43.82 ? OAZ 1T9 301 D 1 HETATM 19 O OBA 1T9 . . . J 2 -26.817 11.517 44.078 1 41.69 ? OBA 1T9 301 D 1 HETATM 20 N NAW 1T9 . . . J 2 -20.942 12.966 42.774 1 44.58 ? NAW 1T9 301 D 1 HETATM 21 C CAU 1T9 . . . J 2 -19.95 13.161 43.653 1 45.29 ? CAU 1T9 301 D 1 HETATM 22 O OAV 1T9 . . . J 2 -19.831 12.537 44.706 1 44.78 ? OAV 1T9 301 D 1 HETATM 23 C CAT 1T9 . . . J 2 -18.939 14.24 43.258 1 46.89 ? CAT 1T9 301 D 1 HETATM 24 C CBC 1T9 . . . J 2 -18.082 13.737 42.095 1 47.07 ? CBC 1T9 301 D 1 HETATM 25 C CBD 1T9 . . . J 2 -16.797 13.111 42.64 1 47.18 ? CBD 1T9 301 D 1 HETATM 26 C CBE 1T9 . . . J 2 -15.839 12.821 41.483 1 47.52 ? CBE 1T9 301 D 1 HETATM 27 C CBF 1T9 . . . J 2 -14.933 11.645 41.852 1 47.23 ? CBF 1T9 301 D 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #