data_4KFM # _model_server_result.job_id G6lIQVBuQ9NlXX_GVpQjZw _model_server_result.datetime_utc '2025-01-10 09:18:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kfm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":408}' # _entry.id 4KFM # _exptl.entry_id 4KFM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KFM _cell.length_a 127.308 _cell.length_b 127.308 _cell.length_c 309.392 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KFM _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -127.308 -127.308 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -127.308 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -127.308 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 85 A CYS 134 1_555 A SG CYS 117 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A O THR 105 A THR 154 1_555 G K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc2 A OG1 THR 105 A THR 154 1_555 H K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc3 A O THR 105 A THR 154 1_555 H K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? metalc ? metalc4 A O ILE 106 A ILE 155 1_555 F K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.01 ? metalc ? metalc5 A O GLY 107 A GLY 156 1_555 E K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.404 ? metalc ? metalc6 A OD2 ASP 179 A ASP 228 1_555 J NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc7 A O ARG 181 A ARG 230 1_555 J NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 192 n n C1B O1B LMT sing 193 n n C1B O5B LMT sing 194 n n C1B H1B LMT sing 195 n n C2B C3B LMT sing 196 n n C2B O2B LMT sing 197 n n C2B H2B LMT sing 198 n n C3B C4B LMT sing 199 n n C3B O3B LMT sing 200 n n C3B H3B LMT sing 201 n n C4B C5B LMT sing 202 n n C4B O4' LMT sing 203 n n C4B H4B LMT sing 204 n n C5B C6B LMT sing 205 n n C5B O5B LMT sing 206 n n C5B H5B LMT sing 207 n n C6B O6B LMT sing 208 n n C6B "H6'2" LMT sing 209 n n C6B "H6'1" LMT sing 210 n n O1B C4' LMT sing 211 n n O2B H2O1 LMT sing 212 n n O3B H3O1 LMT sing 213 n n O4' H4O1 LMT sing 214 n n O6B H6B LMT sing 215 n n C1' C2' LMT sing 216 n n C1' O1' LMT sing 217 n n C1' O5' LMT sing 218 n n C1' H1' LMT sing 219 n n C2' C3' LMT sing 220 n n C2' O2' LMT sing 221 n n C2' H2' LMT sing 222 n n C3' C4' LMT sing 223 n n C3' O3' LMT sing 224 n n C3' H3' LMT sing 225 n n C4' C5' LMT sing 226 n n C4' H4' LMT sing 227 n n C5' C6' LMT sing 228 n n C5' O5' LMT sing 229 n n C5' H5' LMT sing 230 n n C6' O6' LMT sing 231 n n C6' H6D LMT sing 232 n n C6' H6E LMT sing 233 n n O1' C1 LMT sing 234 n n O2' H2O2 LMT sing 235 n n O3' H3O2 LMT sing 236 n n O6' H6' LMT sing 237 n n C1 C2 LMT sing 238 n n C1 H12 LMT sing 239 n n C1 H11 LMT sing 240 n n C2 C3 LMT sing 241 n n C2 H22 LMT sing 242 n n C2 H21 LMT sing 243 n n C3 C4 LMT sing 244 n n C3 H32 LMT sing 245 n n C3 H31 LMT sing 246 n n C4 C5 LMT sing 247 n n C4 H42 LMT sing 248 n n C4 H41 LMT sing 249 n n C5 C6 LMT sing 250 n n C5 H52 LMT sing 251 n n C5 H51 LMT sing 252 n n C6 C7 LMT sing 253 n n C6 H62 LMT sing 254 n n C6 H61 LMT sing 255 n n C7 C8 LMT sing 256 n n C7 H72 LMT sing 257 n n C7 H71 LMT sing 258 n n C8 C9 LMT sing 259 n n C8 H82 LMT sing 260 n n C8 H81 LMT sing 261 n n C9 C10 LMT sing 262 n n C9 H92 LMT sing 263 n n C9 H91 LMT sing 264 n n C10 C11 LMT sing 265 n n C10 H102 LMT sing 266 n n C10 H101 LMT sing 267 n n C11 C12 LMT sing 268 n n C11 H112 LMT sing 269 n n C11 H111 LMT sing 270 n n C12 H123 LMT sing 271 n n C12 H122 LMT sing 272 n n C12 H121 LMT sing 273 n n # _atom_sites.entry_id 4KFM _atom_sites.fract_transf_matrix[1][1] 0.007855 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PIO A 1 401 400 PIO PIO . E 5 K A 1 402 501 K K . F 5 K A 1 403 502 K K . G 5 K A 1 404 503 K K . H 5 K A 1 405 504 K K . I 5 K A 1 406 505 K K . J 6 NA A 1 407 600 NA NA . K 7 LMT A 1 408 700 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . K 7 -41.913 -47.353 -58.186 1 207.26 ? C1B LMT 408 A 1 HETATM 2 C C2B LMT . . . K 7 -41.054 -46.254 -58.823 1 205.15 ? C2B LMT 408 A 1 HETATM 3 C C3B LMT . . . K 7 -39.85 -45.888 -57.954 1 204.19 ? C3B LMT 408 A 1 HETATM 4 C C4B LMT . . . K 7 -40.278 -45.616 -56.514 1 197.88 ? C4B LMT 408 A 1 HETATM 5 C C5B LMT . . . K 7 -41.053 -46.824 -56 1 196.97 ? C5B LMT 408 A 1 HETATM 6 C C6B LMT . . . K 7 -41.479 -46.675 -54.544 1 192.53 ? C6B LMT 408 A 1 HETATM 7 O O1B LMT . . . K 7 -41.236 -48.62 -58.238 1 207.74 ? O1B LMT 408 A 1 HETATM 8 O O2B LMT . . . K 7 -40.589 -46.662 -60.117 1 197 ? O2B LMT 408 A 1 HETATM 9 O O3B LMT . . . K 7 -39.195 -44.74 -58.504 1 209.52 ? O3B LMT 408 A 1 HETATM 10 O O4' LMT . . . K 7 -39.13 -45.367 -55.692 1 185.66 ? O4' LMT 408 A 1 HETATM 11 O O5B LMT . . . K 7 -42.211 -47.013 -56.822 1 205.2 ? O5B LMT 408 A 1 HETATM 12 O O6B LMT . . . K 7 -41.362 -47.94 -53.881 1 181.98 ? O6B LMT 408 A 1 HETATM 13 C C1' LMT . . . K 7 -41.048 -51.945 -60.476 1 179.5 ? C1' LMT 408 A 1 HETATM 14 C C2' LMT . . . K 7 -41.813 -50.849 -61.197 1 181.47 ? C2' LMT 408 A 1 HETATM 15 C C3' LMT . . . K 7 -41.585 -49.543 -60.443 1 188.1 ? C3' LMT 408 A 1 HETATM 16 C C4' LMT . . . K 7 -41.896 -49.678 -58.947 1 192.24 ? C4' LMT 408 A 1 HETATM 17 C C5' LMT . . . K 7 -41.43 -51.011 -58.335 1 182.63 ? C5' LMT 408 A 1 HETATM 18 C C6' LMT . . . K 7 -42.09 -51.264 -56.978 1 174.56 ? C6' LMT 408 A 1 HETATM 19 O O1' LMT . . . K 7 -41.057 -53.137 -61.262 1 172.38 ? O1' LMT 408 A 1 HETATM 20 O O2' LMT . . . K 7 -41.371 -50.747 -62.558 1 178.48 ? O2' LMT 408 A 1 HETATM 21 O O3' LMT . . . K 7 -42.39 -48.506 -61.019 1 179.96 ? O3' LMT 408 A 1 HETATM 22 O O5' LMT . . . K 7 -41.677 -52.125 -59.205 1 178.33 ? O5' LMT 408 A 1 HETATM 23 O O6' LMT . . . K 7 -43.52 -51.257 -57.09 1 165 ? O6' LMT 408 A 1 HETATM 24 C C1 LMT . . . K 7 -39.782 -53.78 -61.34 1 168.4 ? C1 LMT 408 A 1 HETATM 25 C C2 LMT . . . K 7 -38.891 -53.136 -62.398 1 165.24 ? C2 LMT 408 A 1 HETATM 26 C C3 LMT . . . K 7 -37.429 -53.548 -62.214 1 161.86 ? C3 LMT 408 A 1 HETATM 27 C C4 LMT . . . K 7 -37.201 -55.022 -62.548 1 157.57 ? C4 LMT 408 A 1 HETATM 28 C C5 LMT . . . K 7 -35.72 -55.32 -62.767 1 152 ? C5 LMT 408 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #