data_4KFS
#
_model_server_result.job_id            wuhsUYW1A1L6a9aV_UouXg 
_model_server_result.datetime_utc      '2025-02-05 03:57:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4kfs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    4KFS 
#
_exptl.entry_id    4KFS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.57 
_cell.angle_gamma         90 
_cell.entry_id            4KFS 
_cell.length_a            46.6 
_cell.length_b            61.015 
_cell.length_c            70.004 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4KFS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,J 1 1 
B,F,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 39 A ASP 39 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc2 A OD1 ASP 39 A ASP 39 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc3 A NE2 HIS 41 A HIS 41 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc4 A OD2 ASP 73 A ASP 73 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc5 A NE2 HIS 108 A HIS 108 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc6 F MG MG . B MG 301 1_555 H OB1 FLC . B FLC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc7 F MG MG . B MG 301 1_555 H OHB FLC . B FLC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc8 F MG MG . B MG 301 1_555 H OA2 FLC . B FLC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc9 F MG MG . B MG 301 1_555 K O HOH . B HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc10 F MG MG . B MG 301 1_555 K O HOH . B HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc11 F MG MG . B MG 301 1_555 K O HOH . B HOH 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc12 G MG MG . B MG 302 1_555 I OA1 FLC . B FLC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? 
metalc ? metalc13 G MG MG . B MG 302 1_555 I OB1 FLC . B FLC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc14 G MG MG . B MG 302 1_555 I OHB FLC . B FLC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc15 G MG MG . B MG 302 1_555 K O HOH . B HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc16 G MG MG . B MG 302 1_555 K O HOH . B HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc17 G MG MG . B MG 302 1_555 K O HOH . B HOH 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     4KFS 
_atom_sites.fract_transf_matrix[1][1]    0.021459 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002472 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016389 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014379 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AMP A 1 301 1 AMP AMP . 
D 3 ZN A 1 302 1 ZN ZN . 
E 4 SO4 A 1 303 1 SO4 SO4 . 
F 5 MG B 1 301 2 MG MG . 
G 5 MG B 1 302 3 MG MG . 
H 6 FLC B 1 303 1 FLC FLC . 
I 6 FLC B 1 304 2 FLC FLC . 
J 7 HOH A 1 401 3 HOH HOH . 
J 7 HOH A 2 402 4 HOH HOH . 
J 7 HOH A 3 403 6 HOH HOH . 
J 7 HOH A 4 404 20 HOH HOH . 
J 7 HOH A 5 405 28 HOH HOH . 
J 7 HOH A 6 406 32 HOH HOH . 
J 7 HOH A 7 407 37 HOH HOH . 
J 7 HOH A 8 408 38 HOH HOH . 
J 7 HOH A 9 409 48 HOH HOH . 
J 7 HOH A 10 410 49 HOH HOH . 
J 7 HOH A 11 411 52 HOH HOH . 
J 7 HOH A 12 412 53 HOH HOH . 
J 7 HOH A 13 413 54 HOH HOH . 
J 7 HOH A 14 414 58 HOH HOH . 
J 7 HOH A 15 415 60 HOH HOH . 
J 7 HOH A 16 416 62 HOH HOH . 
J 7 HOH A 17 417 63 HOH HOH . 
J 7 HOH A 18 418 69 HOH HOH . 
J 7 HOH A 19 419 71 HOH HOH . 
J 7 HOH A 20 420 72 HOH HOH . 
J 7 HOH A 21 421 75 HOH HOH . 
J 7 HOH A 22 422 78 HOH HOH . 
J 7 HOH A 23 423 80 HOH HOH . 
J 7 HOH A 24 424 88 HOH HOH . 
J 7 HOH A 25 425 90 HOH HOH . 
J 7 HOH A 26 426 103 HOH HOH . 
J 7 HOH A 27 427 110 HOH HOH . 
J 7 HOH A 28 428 111 HOH HOH . 
J 7 HOH A 29 429 112 HOH HOH . 
J 7 HOH A 30 430 113 HOH HOH . 
J 7 HOH A 31 431 114 HOH HOH . 
J 7 HOH A 32 432 115 HOH HOH . 
J 7 HOH A 33 433 116 HOH HOH . 
J 7 HOH A 34 434 117 HOH HOH . 
J 7 HOH A 35 435 118 HOH HOH . 
J 7 HOH A 36 436 120 HOH HOH . 
J 7 HOH A 37 437 121 HOH HOH . 
J 7 HOH A 38 438 122 HOH HOH . 
J 7 HOH A 39 439 123 HOH HOH . 
J 7 HOH A 40 440 124 HOH HOH . 
J 7 HOH A 41 441 146 HOH HOH . 
J 7 HOH A 42 442 147 HOH HOH . 
J 7 HOH A 43 443 148 HOH HOH . 
J 7 HOH A 44 444 149 HOH HOH . 
J 7 HOH A 45 445 150 HOH HOH . 
J 7 HOH A 46 446 151 HOH HOH . 
J 7 HOH A 47 447 152 HOH HOH . 
J 7 HOH A 48 448 156 HOH HOH . 
J 7 HOH A 49 449 166 HOH HOH . 
J 7 HOH A 50 450 167 HOH HOH . 
J 7 HOH A 51 451 168 HOH HOH . 
J 7 HOH A 52 452 169 HOH HOH . 
J 7 HOH A 53 453 170 HOH HOH . 
J 7 HOH A 54 454 171 HOH HOH . 
J 7 HOH A 55 455 172 HOH HOH . 
J 7 HOH A 56 456 177 HOH HOH . 
J 7 HOH A 57 457 178 HOH HOH . 
J 7 HOH A 58 458 188 HOH HOH . 
K 7 HOH B 1 401 2 HOH HOH . 
K 7 HOH B 2 402 8 HOH HOH . 
K 7 HOH B 3 403 13 HOH HOH . 
K 7 HOH B 4 404 18 HOH HOH . 
K 7 HOH B 5 405 21 HOH HOH . 
K 7 HOH B 6 406 22 HOH HOH . 
K 7 HOH B 7 407 23 HOH HOH . 
K 7 HOH B 8 408 29 HOH HOH . 
K 7 HOH B 9 409 36 HOH HOH . 
K 7 HOH B 10 410 40 HOH HOH . 
K 7 HOH B 11 411 44 HOH HOH . 
K 7 HOH B 12 412 47 HOH HOH . 
K 7 HOH B 13 413 56 HOH HOH . 
K 7 HOH B 14 414 61 HOH HOH . 
K 7 HOH B 15 415 68 HOH HOH . 
K 7 HOH B 16 416 76 HOH HOH . 
K 7 HOH B 17 417 79 HOH HOH . 
K 7 HOH B 18 418 89 HOH HOH . 
K 7 HOH B 19 419 92 HOH HOH . 
K 7 HOH B 20 420 96 HOH HOH . 
K 7 HOH B 21 421 98 HOH HOH . 
K 7 HOH B 22 422 101 HOH HOH . 
K 7 HOH B 23 423 106 HOH HOH . 
K 7 HOH B 24 424 107 HOH HOH . 
K 7 HOH B 25 425 109 HOH HOH . 
K 7 HOH B 26 426 119 HOH HOH . 
K 7 HOH B 27 427 125 HOH HOH . 
K 7 HOH B 28 428 126 HOH HOH . 
K 7 HOH B 29 429 127 HOH HOH . 
K 7 HOH B 30 430 128 HOH HOH . 
K 7 HOH B 31 431 129 HOH HOH . 
K 7 HOH B 32 432 130 HOH HOH . 
K 7 HOH B 33 433 131 HOH HOH . 
K 7 HOH B 34 434 132 HOH HOH . 
K 7 HOH B 35 435 133 HOH HOH . 
K 7 HOH B 36 436 134 HOH HOH . 
K 7 HOH B 37 437 135 HOH HOH . 
K 7 HOH B 38 438 136 HOH HOH . 
K 7 HOH B 39 439 137 HOH HOH . 
K 7 HOH B 40 440 138 HOH HOH . 
K 7 HOH B 41 441 139 HOH HOH . 
K 7 HOH B 42 442 140 HOH HOH . 
K 7 HOH B 43 443 141 HOH HOH . 
K 7 HOH B 44 444 142 HOH HOH . 
K 7 HOH B 45 445 143 HOH HOH . 
K 7 HOH B 46 446 144 HOH HOH . 
K 7 HOH B 47 447 145 HOH HOH . 
K 7 HOH B 48 448 153 HOH HOH . 
K 7 HOH B 49 449 154 HOH HOH . 
K 7 HOH B 50 450 155 HOH HOH . 
K 7 HOH B 51 451 157 HOH HOH . 
K 7 HOH B 52 452 163 HOH HOH . 
K 7 HOH B 53 453 164 HOH HOH . 
K 7 HOH B 54 454 165 HOH HOH . 
K 7 HOH B 55 455 173 HOH HOH . 
K 7 HOH B 56 456 174 HOH HOH . 
K 7 HOH B 57 457 175 HOH HOH . 
K 7 HOH B 58 458 176 HOH HOH . 
K 7 HOH B 59 459 179 HOH HOH . 
K 7 HOH B 60 460 180 HOH HOH . 
K 7 HOH B 61 461 181 HOH HOH . 
K 7 HOH B 62 462 182 HOH HOH . 
K 7 HOH B 63 463 183 HOH HOH . 
K 7 HOH B 64 464 184 HOH HOH . 
K 7 HOH B 65 465 185 HOH HOH . 
K 7 HOH B 66 466 186 HOH HOH . 
K 7 HOH B 67 467 187 HOH HOH . 
K 7 HOH B 68 468 190 HOH HOH . 
K 7 HOH B 69 469 191 HOH HOH . 
K 7 HOH B 70 470 192 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . C 2 35.412 29.015 51.661 1 45.12 ? P AMP 301 A 1 
HETATM 2 O O1P AMP . . . C 2 34.073 29.191 50.981 1 34.75 ? O1P AMP 301 A 1 
HETATM 3 O O2P AMP . . . C 2 36.549 29.921 51.243 1 43.3 ? O2P AMP 301 A 1 
HETATM 4 O O3P AMP . . . C 2 35.853 27.573 51.582 1 38.11 ? O3P AMP 301 A 1 
HETATM 5 O O5' AMP . . . C 2 35.228 29.098 53.242 1 43.2 ? O5' AMP 301 A 1 
HETATM 6 C C5' AMP . . . C 2 35.819 28.129 54.093 1 44.77 ? C5' AMP 301 A 1 
HETATM 7 C C4' AMP . . . C 2 36.219 28.725 55.42 1 46.02 ? C4' AMP 301 A 1 
HETATM 8 O O4' AMP . . . C 2 35.215 28.413 56.413 1 44.13 ? O4' AMP 301 A 1 
HETATM 9 C C3' AMP . . . C 2 37.505 28.186 56.023 1 47.95 ? C3' AMP 301 A 1 
HETATM 10 O O3' AMP . . . C 2 38.668 28.772 55.463 1 52.64 ? O3' AMP 301 A 1 
HETATM 11 C C2' AMP . . . C 2 37.33 28.462 57.515 1 49.15 ? C2' AMP 301 A 1 
HETATM 12 O O2' AMP . . . C 2 37.696 29.798 57.827 1 59.05 ? O2' AMP 301 A 1 
HETATM 13 C C1' AMP . . . C 2 35.814 28.323 57.688 1 46.82 ? C1' AMP 301 A 1 
HETATM 14 N N9 AMP . . . C 2 35.443 27.032 58.302 1 48.87 ? N9 AMP 301 A 1 
HETATM 15 C C8 AMP . . . C 2 35.806 26.653 59.547 1 47.69 ? C8 AMP 301 A 1 
HETATM 16 N N7 AMP . . . C 2 35.32 25.421 59.849 1 44.03 ? N7 AMP 301 A 1 
HETATM 17 C C5 AMP . . . C 2 34.622 24.995 58.783 1 36.64 ? C5 AMP 301 A 1 
HETATM 18 C C6 AMP . . . C 2 33.861 23.77 58.457 1 35.68 ? C6 AMP 301 A 1 
HETATM 19 N N6 AMP . . . C 2 33.754 22.764 59.357 1 42.58 ? N6 AMP 301 A 1 
HETATM 20 N N1 AMP . . . C 2 33.283 23.698 57.243 1 28.71 ? N1 AMP 301 A 1 
HETATM 21 C C2 AMP . . . C 2 33.406 24.717 56.363 1 32.24 ? C2 AMP 301 A 1 
HETATM 22 N N3 AMP . . . C 2 34.085 25.857 56.576 1 29.31 ? N3 AMP 301 A 1 
HETATM 23 C C4 AMP . . . C 2 34.701 26.056 57.762 1 34.38 ? C4 AMP 301 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#