data_4KGG # _model_server_result.job_id BDnkKCE7GDZsjacY5PIxeA _model_server_result.datetime_utc '2024-12-22 19:10:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kgg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 4KGG # _exptl.entry_id 4KGG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KGG _cell.length_a 148.754 _cell.length_b 148.754 _cell.length_c 148.754 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KGG _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dodecameric 12 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1,2,3 A,C,E,G,I,K 2 1,2,3 B,D,F,H,J,L 3 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -z,x+1/2,-y+1/2 0 0 -1 1 0 0 0 -1 0 0 74.377 74.377 3 'crystal symmetry operation' 11_455 y-1/2,-z+1/2,-x 0 1 0 0 0 -1 -1 0 0 -74.377 74.377 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG H 301 NAG 3 n E NAG 2 E 2 NAG H 302 NAG 3 n E BMA 3 E 3 BMA H 303 BMA 3 n E MAN 4 E 4 MAN H 304 MAN 4 n F NAG 1 F 1 NAG I 301 NAG 4 n F NAG 2 F 2 NAG I 302 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 C CYS 49 1_555 A SG CYS 33 C CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? disulf ? disulf2 A SG CYS 23 C CYS 52 1_555 A SG CYS 41 C CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? disulf ? disulf3 A SG CYS 44 C CYS 73 1_555 A SG CYS 59 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? disulf ? disulf4 A SG CYS 62 C CYS 91 1_555 A SG CYS 76 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? disulf ? disulf5 A SG CYS 66 C CYS 95 1_555 A SG CYS 84 C CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf6 A SG CYS 86 C CYS 115 1_555 A SG CYS 97 C CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? disulf ? disulf7 A SG CYS 103 C CYS 132 1_555 A SG CYS 121 C CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf8 A SG CYS 124 C CYS 153 1_555 A SG CYS 139 C CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? disulf ? disulf9 A SG CYS 145 C CYS 174 1_555 A SG CYS 164 C CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf10 B SG CYS 20 D CYS 49 1_555 B SG CYS 33 D CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 B SG CYS 23 D CYS 52 1_555 B SG CYS 41 D CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? disulf ? disulf12 B SG CYS 44 D CYS 73 1_555 B SG CYS 59 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf13 B SG CYS 62 D CYS 91 1_555 B SG CYS 76 D CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? disulf ? disulf14 B SG CYS 66 D CYS 95 1_555 B SG CYS 84 D CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf15 B SG CYS 86 D CYS 115 1_555 B SG CYS 97 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? disulf ? disulf16 B SG CYS 103 D CYS 132 1_555 B SG CYS 121 D CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf17 B SG CYS 124 D CYS 153 1_555 B SG CYS 139 D CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf18 B SG CYS 145 D CYS 174 1_555 B SG CYS 164 D CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf19 C SG CYS 72 A CYS 154 1_555 C SG CYS 105 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf20 D SG CYS 72 B CYS 154 1_555 D SG CYS 105 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? covale ? covale1 A ND2 ASN 144 C ASN 173 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.549 ? covale ? covale2 B ND2 ASN 144 D ASN 173 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.525 ? covale ? covale3 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale4 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? metalc ? metalc1 A O CYS 103 C CYS 132 1_555 G MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc2 A O PRO 104 C PRO 133 1_555 G MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc3 A O ALA 107 C ALA 136 1_555 G MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc4 A OG SER 130 C SER 159 1_555 G MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc5 A O SER 132 C SER 161 1_555 G MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc6 G MG MG . C MG 301 1_555 I O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc7 B O CYS 103 D CYS 132 1_555 H MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc8 B O PRO 104 D PRO 133 1_555 H MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc9 B O ALA 107 D ALA 136 1_555 H MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc10 B OG SER 130 D SER 159 1_555 H MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc11 B O SER 132 D SER 161 1_555 H MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc12 H MG MG . D MG 301 1_555 J O HOH . D HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4KGG _atom_sites.fract_transf_matrix[1][1] 0.006723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006723 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 MG C 1 301 1 MG MG . H 5 MG D 1 301 1 MG MG . I 6 HOH C 1 401 12 HOH HOH . I 6 HOH C 2 402 13 HOH HOH . I 6 HOH C 3 403 14 HOH HOH . I 6 HOH C 4 404 23 HOH HOH . I 6 HOH C 5 405 29 HOH HOH . I 6 HOH C 6 406 32 HOH HOH . I 6 HOH C 7 407 35 HOH HOH . I 6 HOH C 8 408 44 HOH HOH . I 6 HOH C 9 409 45 HOH HOH . J 6 HOH D 1 401 3 HOH HOH . J 6 HOH D 2 402 7 HOH HOH . J 6 HOH D 3 403 17 HOH HOH . J 6 HOH D 4 404 25 HOH HOH . J 6 HOH D 5 405 26 HOH HOH . J 6 HOH D 6 406 36 HOH HOH . J 6 HOH D 7 407 40 HOH HOH . J 6 HOH D 8 408 41 HOH HOH . K 6 HOH A 1 301 1 HOH HOH . K 6 HOH A 2 302 5 HOH HOH . K 6 HOH A 3 303 6 HOH HOH . K 6 HOH A 4 304 9 HOH HOH . K 6 HOH A 5 305 11 HOH HOH . K 6 HOH A 6 306 16 HOH HOH . K 6 HOH A 7 307 20 HOH HOH . K 6 HOH A 8 308 21 HOH HOH . K 6 HOH A 9 309 22 HOH HOH . K 6 HOH A 10 310 24 HOH HOH . K 6 HOH A 11 311 27 HOH HOH . K 6 HOH A 12 312 28 HOH HOH . K 6 HOH A 13 313 31 HOH HOH . K 6 HOH A 14 314 33 HOH HOH . K 6 HOH A 15 315 39 HOH HOH . K 6 HOH A 16 316 42 HOH HOH . K 6 HOH A 17 317 43 HOH HOH . L 6 HOH B 1 301 2 HOH HOH . L 6 HOH B 2 302 4 HOH HOH . L 6 HOH B 3 303 8 HOH HOH . L 6 HOH B 4 304 10 HOH HOH . L 6 HOH B 5 305 15 HOH HOH . L 6 HOH B 6 306 18 HOH HOH . L 6 HOH B 7 307 19 HOH HOH . L 6 HOH B 8 308 30 HOH HOH . L 6 HOH B 9 309 34 HOH HOH . L 6 HOH B 10 310 37 HOH HOH . L 6 HOH B 11 311 38 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 5 _atom_site.Cartn_x 20.514 _atom_site.Cartn_y 108.986 _atom_site.Cartn_z 1.273 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #