data_4KGQ # _model_server_result.job_id xydVJOewRu8Fv6Te-7uxnA _model_server_result.datetime_utc '2024-10-13 01:23:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kgq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 4KGQ # _exptl.entry_id 4KGQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KGQ _cell.length_a 149.269 _cell.length_b 149.269 _cell.length_c 149.269 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KGQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_454 -z-1/2,-x,y-1/2 0 0 -1 -1 0 0 0 1 0 -74.6345 0 -74.6345 3 'crystal symmetry operation' 10_554 -y,z+1/2,-x-1/2 0 -1 0 0 0 1 -1 0 0 0 74.6345 -74.6345 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG E 301 NAG 3 n E NAG 2 E 2 NAG E 302 NAG 3 n E BMA 3 E 3 BMA E 303 BMA 3 n E MAN 4 E 4 MAN E 304 MAN 4 n F NAG 1 F 1 NAG H 301 NAG 4 n F NAG 2 F 2 NAG H 302 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 C CYS 49 1_555 A SG CYS 33 C CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? disulf ? disulf2 A SG CYS 23 C CYS 52 1_555 A SG CYS 41 C CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? disulf ? disulf3 A SG CYS 44 C CYS 73 1_555 A SG CYS 59 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? disulf ? disulf4 A SG CYS 62 C CYS 91 1_555 A SG CYS 76 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? disulf ? disulf5 A SG CYS 66 C CYS 95 1_555 A SG CYS 84 C CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? disulf ? disulf6 A SG CYS 86 C CYS 115 1_555 A SG CYS 97 C CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? disulf ? disulf7 A SG CYS 103 C CYS 132 1_555 A SG CYS 121 C CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf8 A SG CYS 124 C CYS 153 1_555 A SG CYS 139 C CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? disulf ? disulf9 A SG CYS 145 C CYS 174 1_555 A SG CYS 164 C CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf10 B SG CYS 20 D CYS 49 1_555 B SG CYS 33 D CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 B SG CYS 23 D CYS 52 1_555 B SG CYS 41 D CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? disulf ? disulf12 B SG CYS 44 D CYS 73 1_555 B SG CYS 59 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? disulf ? disulf13 B SG CYS 62 D CYS 91 1_555 B SG CYS 76 D CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? disulf ? disulf14 B SG CYS 66 D CYS 95 1_555 B SG CYS 84 D CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? disulf ? disulf15 B SG CYS 86 D CYS 115 1_555 B SG CYS 97 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? disulf ? disulf16 B SG CYS 103 D CYS 132 1_555 B SG CYS 121 D CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf17 B SG CYS 124 D CYS 153 1_555 B SG CYS 139 D CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? disulf ? disulf18 B SG CYS 145 D CYS 174 1_555 B SG CYS 164 D CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf19 C SG CYS 72 A CYS 154 1_555 C SG CYS 105 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf20 D SG CYS 72 B CYS 154 1_555 D SG CYS 105 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? covale ? covale1 A ND2 ASN 144 C ASN 173 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale2 B ND2 ASN 144 D ASN 173 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale3 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale4 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.482 ? covale ? covale5 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale6 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? metalc ? metalc1 A O CYS 103 C CYS 132 1_555 G MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc2 A O PRO 104 C PRO 133 1_555 G MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc3 A O ALA 107 C ALA 136 1_555 G MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc4 A OG SER 130 C SER 159 1_555 G MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc5 A O SER 132 C SER 161 1_555 G MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc6 G MG MG . C MG 301 1_555 I O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc7 B O CYS 103 D CYS 132 1_555 H MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc8 B O PRO 104 D PRO 133 1_555 H MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc9 B O ALA 107 D ALA 136 1_555 H MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc10 B OG SER 130 D SER 159 1_555 H MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc11 B O SER 132 D SER 161 1_555 H MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc12 H MG MG . D MG 301 1_555 J O HOH . D HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4KGQ _atom_sites.fract_transf_matrix[1][1] 0.006699 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006699 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 MG C 1 301 1 MG MG . H 5 MG D 1 301 1 MG MG . I 6 HOH C 1 401 9 HOH HOH . I 6 HOH C 2 402 13 HOH HOH . I 6 HOH C 3 403 19 HOH HOH . I 6 HOH C 4 404 23 HOH HOH . I 6 HOH C 5 405 26 HOH HOH . I 6 HOH C 6 406 28 HOH HOH . I 6 HOH C 7 407 34 HOH HOH . I 6 HOH C 8 408 38 HOH HOH . I 6 HOH C 9 409 39 HOH HOH . I 6 HOH C 10 410 47 HOH HOH . I 6 HOH C 11 411 50 HOH HOH . I 6 HOH C 12 412 51 HOH HOH . I 6 HOH C 13 413 53 HOH HOH . I 6 HOH C 14 414 59 HOH HOH . I 6 HOH C 15 415 64 HOH HOH . I 6 HOH C 16 416 74 HOH HOH . I 6 HOH C 17 417 77 HOH HOH . I 6 HOH C 18 418 82 HOH HOH . I 6 HOH C 19 419 83 HOH HOH . I 6 HOH C 20 420 84 HOH HOH . I 6 HOH C 21 421 89 HOH HOH . I 6 HOH C 22 422 91 HOH HOH . I 6 HOH C 23 423 92 HOH HOH . I 6 HOH C 24 424 93 HOH HOH . I 6 HOH C 25 425 94 HOH HOH . I 6 HOH C 26 426 96 HOH HOH . I 6 HOH C 27 427 97 HOH HOH . I 6 HOH C 28 428 100 HOH HOH . I 6 HOH C 29 429 102 HOH HOH . I 6 HOH C 30 430 103 HOH HOH . I 6 HOH C 31 431 116 HOH HOH . I 6 HOH C 32 432 117 HOH HOH . I 6 HOH C 33 433 121 HOH HOH . I 6 HOH C 34 434 123 HOH HOH . I 6 HOH C 35 435 124 HOH HOH . I 6 HOH C 36 436 125 HOH HOH . I 6 HOH C 37 437 142 HOH HOH . I 6 HOH C 38 438 143 HOH HOH . J 6 HOH D 1 401 1 HOH HOH . J 6 HOH D 2 402 17 HOH HOH . J 6 HOH D 3 403 33 HOH HOH . J 6 HOH D 4 404 69 HOH HOH . J 6 HOH D 5 405 95 HOH HOH . J 6 HOH D 6 406 104 HOH HOH . J 6 HOH D 7 407 105 HOH HOH . J 6 HOH D 8 408 119 HOH HOH . J 6 HOH D 9 409 120 HOH HOH . J 6 HOH D 10 410 122 HOH HOH . K 6 HOH A 1 301 3 HOH HOH . K 6 HOH A 2 302 5 HOH HOH . K 6 HOH A 3 303 7 HOH HOH . K 6 HOH A 4 304 8 HOH HOH . K 6 HOH A 5 305 11 HOH HOH . K 6 HOH A 6 306 14 HOH HOH . K 6 HOH A 7 307 15 HOH HOH . K 6 HOH A 8 308 16 HOH HOH . K 6 HOH A 9 309 27 HOH HOH . K 6 HOH A 10 310 29 HOH HOH . K 6 HOH A 11 311 30 HOH HOH . K 6 HOH A 12 312 31 HOH HOH . K 6 HOH A 13 313 32 HOH HOH . K 6 HOH A 14 314 37 HOH HOH . K 6 HOH A 15 315 40 HOH HOH . K 6 HOH A 16 316 43 HOH HOH . K 6 HOH A 17 317 45 HOH HOH . K 6 HOH A 18 318 48 HOH HOH . K 6 HOH A 19 319 49 HOH HOH . K 6 HOH A 20 320 56 HOH HOH . K 6 HOH A 21 321 57 HOH HOH . K 6 HOH A 22 322 58 HOH HOH . K 6 HOH A 23 323 60 HOH HOH . K 6 HOH A 24 324 62 HOH HOH . K 6 HOH A 25 325 68 HOH HOH . K 6 HOH A 26 326 71 HOH HOH . K 6 HOH A 27 327 72 HOH HOH . K 6 HOH A 28 328 73 HOH HOH . K 6 HOH A 29 329 75 HOH HOH . K 6 HOH A 30 330 78 HOH HOH . K 6 HOH A 31 331 85 HOH HOH . K 6 HOH A 32 332 86 HOH HOH . K 6 HOH A 33 333 90 HOH HOH . K 6 HOH A 34 334 101 HOH HOH . K 6 HOH A 35 335 108 HOH HOH . K 6 HOH A 36 336 109 HOH HOH . K 6 HOH A 37 337 110 HOH HOH . K 6 HOH A 38 338 111 HOH HOH . K 6 HOH A 39 339 112 HOH HOH . K 6 HOH A 40 340 130 HOH HOH . K 6 HOH A 41 341 132 HOH HOH . K 6 HOH A 42 342 134 HOH HOH . K 6 HOH A 43 343 137 HOH HOH . K 6 HOH A 44 344 141 HOH HOH . L 6 HOH B 1 301 2 HOH HOH . L 6 HOH B 2 302 6 HOH HOH . L 6 HOH B 3 303 10 HOH HOH . L 6 HOH B 4 304 18 HOH HOH . L 6 HOH B 5 305 20 HOH HOH . L 6 HOH B 6 306 21 HOH HOH . L 6 HOH B 7 307 24 HOH HOH . L 6 HOH B 8 308 35 HOH HOH . L 6 HOH B 9 309 41 HOH HOH . L 6 HOH B 10 310 44 HOH HOH . L 6 HOH B 11 311 46 HOH HOH . L 6 HOH B 12 312 52 HOH HOH . L 6 HOH B 13 313 54 HOH HOH . L 6 HOH B 14 314 55 HOH HOH . L 6 HOH B 15 315 61 HOH HOH . L 6 HOH B 16 316 63 HOH HOH . L 6 HOH B 17 317 65 HOH HOH . L 6 HOH B 18 318 66 HOH HOH . L 6 HOH B 19 319 67 HOH HOH . L 6 HOH B 20 320 76 HOH HOH . L 6 HOH B 21 321 80 HOH HOH . L 6 HOH B 22 322 81 HOH HOH . L 6 HOH B 23 323 87 HOH HOH . L 6 HOH B 24 324 88 HOH HOH . L 6 HOH B 25 325 98 HOH HOH . L 6 HOH B 26 326 106 HOH HOH . L 6 HOH B 27 327 107 HOH HOH . L 6 HOH B 28 328 113 HOH HOH . L 6 HOH B 29 329 114 HOH HOH . L 6 HOH B 30 330 115 HOH HOH . L 6 HOH B 31 331 118 HOH HOH . L 6 HOH B 32 332 128 HOH HOH . L 6 HOH B 33 333 129 HOH HOH . L 6 HOH B 34 334 135 HOH HOH . L 6 HOH B 35 335 138 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 5 _atom_site.Cartn_x 1.521 _atom_site.Cartn_y 20.42 _atom_site.Cartn_z -39.966 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 55.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #