data_4KHA # _model_server_result.job_id fgAZWRu3tH5Sk0XbXn5Xrw _model_server_result.datetime_utc '2025-02-26 19:54:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4kha # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1202}' # _entry.id 4KHA # _exptl.entry_id 4KHA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4KHA _cell.length_a 108.421 _cell.length_b 108.421 _cell.length_c 117.769 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KHA _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 334 n n C C2 TRS sing 335 n n C C3 TRS sing 336 n n C N TRS sing 337 n n C1 O1 TRS sing 338 n n C1 H11 TRS sing 339 n n C1 H12 TRS sing 340 n n C2 O2 TRS sing 341 n n C2 H21 TRS sing 342 n n C2 H22 TRS sing 343 n n C3 O3 TRS sing 344 n n C3 H31 TRS sing 345 n n C3 H32 TRS sing 346 n n N HN1 TRS sing 347 n n N HN2 TRS sing 348 n n N HN3 TRS sing 349 n n O1 HO1 TRS sing 350 n n O2 HO2 TRS sing 351 n n O3 HO3 TRS sing 352 n n # _atom_sites.entry_id 4KHA _atom_sites.fract_transf_matrix[1][1] 0.009223 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009223 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008491 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL A 1 1201 1122 CL CL . D 4 TRS A 1 1202 1123 TRS TRS . E 3 CL B 1 201 103 CL CL . F 5 HOH A 1 1301 1124 HOH HOH . F 5 HOH A 2 1302 1125 HOH HOH . F 5 HOH A 3 1303 1126 HOH HOH . F 5 HOH A 4 1304 1127 HOH HOH . F 5 HOH A 5 1305 1128 HOH HOH . F 5 HOH A 6 1306 1129 HOH HOH . F 5 HOH A 7 1307 1130 HOH HOH . F 5 HOH A 8 1308 1131 HOH HOH . F 5 HOH A 9 1309 1132 HOH HOH . F 5 HOH A 10 1310 1133 HOH HOH . F 5 HOH A 11 1311 1134 HOH HOH . F 5 HOH A 12 1312 1135 HOH HOH . F 5 HOH A 13 1313 1136 HOH HOH . F 5 HOH A 14 1314 1137 HOH HOH . F 5 HOH A 15 1315 1138 HOH HOH . F 5 HOH A 16 1316 1139 HOH HOH . F 5 HOH A 17 1317 1140 HOH HOH . F 5 HOH A 18 1318 1141 HOH HOH . F 5 HOH A 19 1319 1142 HOH HOH . F 5 HOH A 20 1320 1143 HOH HOH . F 5 HOH A 21 1321 1144 HOH HOH . F 5 HOH A 22 1322 1145 HOH HOH . F 5 HOH A 23 1323 1146 HOH HOH . F 5 HOH A 24 1324 1147 HOH HOH . F 5 HOH A 25 1325 1148 HOH HOH . F 5 HOH A 26 1326 1149 HOH HOH . F 5 HOH A 27 1327 1150 HOH HOH . F 5 HOH A 28 1328 1151 HOH HOH . F 5 HOH A 29 1329 1152 HOH HOH . F 5 HOH A 30 1330 1153 HOH HOH . F 5 HOH A 31 1331 1154 HOH HOH . F 5 HOH A 32 1332 1155 HOH HOH . F 5 HOH A 33 1333 1156 HOH HOH . F 5 HOH A 34 1334 1157 HOH HOH . F 5 HOH A 35 1335 1158 HOH HOH . F 5 HOH A 36 1336 1159 HOH HOH . F 5 HOH A 37 1337 1160 HOH HOH . F 5 HOH A 38 1338 1161 HOH HOH . F 5 HOH A 39 1339 1162 HOH HOH . F 5 HOH A 40 1340 1163 HOH HOH . F 5 HOH A 41 1341 1165 HOH HOH . F 5 HOH A 42 1342 1166 HOH HOH . F 5 HOH A 43 1343 1167 HOH HOH . F 5 HOH A 44 1344 1168 HOH HOH . F 5 HOH A 45 1345 1170 HOH HOH . F 5 HOH A 46 1346 1171 HOH HOH . F 5 HOH A 47 1347 1172 HOH HOH . F 5 HOH A 48 1348 1173 HOH HOH . F 5 HOH A 49 1349 1174 HOH HOH . F 5 HOH A 50 1350 1175 HOH HOH . F 5 HOH A 51 1351 1176 HOH HOH . F 5 HOH A 52 1352 1177 HOH HOH . F 5 HOH A 53 1353 1178 HOH HOH . F 5 HOH A 54 1354 1179 HOH HOH . F 5 HOH A 55 1355 1180 HOH HOH . F 5 HOH A 56 1356 1181 HOH HOH . F 5 HOH A 57 1357 1182 HOH HOH . F 5 HOH A 58 1358 1183 HOH HOH . F 5 HOH A 59 1359 1184 HOH HOH . F 5 HOH A 60 1360 1185 HOH HOH . F 5 HOH A 61 1361 1186 HOH HOH . F 5 HOH A 62 1362 1187 HOH HOH . F 5 HOH A 63 1363 1188 HOH HOH . F 5 HOH A 64 1364 1189 HOH HOH . F 5 HOH A 65 1365 1190 HOH HOH . F 5 HOH A 66 1366 1191 HOH HOH . F 5 HOH A 67 1367 1192 HOH HOH . F 5 HOH A 68 1368 1193 HOH HOH . F 5 HOH A 69 1369 1194 HOH HOH . F 5 HOH A 70 1370 1195 HOH HOH . F 5 HOH A 71 1371 1196 HOH HOH . F 5 HOH A 72 1372 1197 HOH HOH . F 5 HOH A 73 1373 1198 HOH HOH . F 5 HOH A 74 1374 1199 HOH HOH . F 5 HOH A 75 1375 1200 HOH HOH . F 5 HOH A 76 1376 1201 HOH HOH . F 5 HOH A 77 1377 1202 HOH HOH . F 5 HOH A 78 1378 1203 HOH HOH . F 5 HOH A 79 1379 1204 HOH HOH . F 5 HOH A 80 1380 1205 HOH HOH . F 5 HOH A 81 1381 1206 HOH HOH . F 5 HOH A 82 1382 1207 HOH HOH . F 5 HOH A 83 1383 1208 HOH HOH . F 5 HOH A 84 1384 1209 HOH HOH . F 5 HOH A 85 1385 1210 HOH HOH . F 5 HOH A 86 1386 1211 HOH HOH . F 5 HOH A 87 1387 1212 HOH HOH . F 5 HOH A 88 1388 1213 HOH HOH . F 5 HOH A 89 1389 1214 HOH HOH . F 5 HOH A 90 1390 113 HOH HOH . G 5 HOH B 1 301 1164 HOH HOH . G 5 HOH B 2 302 1169 HOH HOH . G 5 HOH B 3 303 104 HOH HOH . G 5 HOH B 4 304 105 HOH HOH . G 5 HOH B 5 305 106 HOH HOH . G 5 HOH B 6 306 107 HOH HOH . G 5 HOH B 7 307 108 HOH HOH . G 5 HOH B 8 308 109 HOH HOH . G 5 HOH B 9 309 110 HOH HOH . G 5 HOH B 10 310 111 HOH HOH . G 5 HOH B 11 311 112 HOH HOH . G 5 HOH B 12 312 114 HOH HOH . G 5 HOH B 13 313 115 HOH HOH . G 5 HOH B 14 314 116 HOH HOH . G 5 HOH B 15 315 117 HOH HOH . G 5 HOH B 16 316 118 HOH HOH . G 5 HOH B 17 317 119 HOH HOH . G 5 HOH B 18 318 120 HOH HOH . G 5 HOH B 19 319 121 HOH HOH . G 5 HOH B 20 320 122 HOH HOH . G 5 HOH B 21 321 123 HOH HOH . G 5 HOH B 22 322 124 HOH HOH . G 5 HOH B 23 323 125 HOH HOH . G 5 HOH B 24 324 126 HOH HOH . G 5 HOH B 25 325 127 HOH HOH . G 5 HOH B 26 326 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 4 -6.481 -23.273 8.688 1 84.45 ? C TRS 1202 A 1 HETATM 2 C C1 TRS . . . D 4 -5.133 -23.643 8.075 1 80.3 ? C1 TRS 1202 A 1 HETATM 3 C C2 TRS . . . D 4 -6.337 -22.145 9.694 1 90.57 ? C2 TRS 1202 A 1 HETATM 4 C C3 TRS . . . D 4 -7.051 -24.501 9.37 1 83.61 ? C3 TRS 1202 A 1 HETATM 5 N N TRS . . . D 4 -7.397 -22.83 7.633 1 80.59 ? N TRS 1202 A 1 HETATM 6 O O1 TRS . . . D 4 -4.163 -23.829 9.083 1 85.22 ? O1 TRS 1202 A 1 HETATM 7 O O2 TRS . . . D 4 -5.728 -21.045 9.058 1 90.16 ? O2 TRS 1202 A 1 HETATM 8 O O3 TRS . . . D 4 -8.391 -24.315 9.762 1 93.12 ? O3 TRS 1202 A 1 HETATM 9 H H11 TRS . . . D 4 -4.81 -22.851 7.4 1 96.36 ? H11 TRS 1202 A 1 HETATM 10 H H12 TRS . . . D 4 -5.236 -24.56 7.494 1 96.36 ? H12 TRS 1202 A 1 HETATM 11 H H21 TRS . . . D 4 -5.725 -22.473 10.535 1 108.69 ? H21 TRS 1202 A 1 HETATM 12 H H22 TRS . . . D 4 -7.318 -21.859 10.074 1 108.69 ? H22 TRS 1202 A 1 HETATM 13 H H31 TRS . . . D 4 -6.45 -24.737 10.248 1 100.33 ? H31 TRS 1202 A 1 HETATM 14 H H32 TRS . . . D 4 -6.991 -25.351 8.69 1 100.33 ? H32 TRS 1202 A 1 HETATM 15 H HN1 TRS . . . D 4 -7.56 -23.525 6.912 1 96.7 ? HN1 TRS 1202 A 1 HETATM 16 H HN2 TRS . . . D 4 -8.243 -22.391 7.981 1 96.7 ? HN2 TRS 1202 A 1 HETATM 17 H HN3 TRS . . . D 4 -6.901 -22.088 7.162 1 96.7 ? HN3 TRS 1202 A 1 HETATM 18 H HO1 TRS . . . D 4 -3.305 -24.065 8.672 1 102.26 ? HO1 TRS 1202 A 1 HETATM 19 H HO2 TRS . . . D 4 -5.63 -20.31 9.698 1 108.19 ? HO2 TRS 1202 A 1 HETATM 20 H HO3 TRS . . . D 4 -8.72 -25.129 10.197 1 111.74 ? HO3 TRS 1202 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #