data_4KHR # _model_server_result.job_id V0XlP1Jlg1IoBqwA0vxepA _model_server_result.datetime_utc '2024-12-26 13:10:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4khr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":604}' # _entry.id 4KHR # _exptl.entry_id 4KHR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 554.37 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[4-({[5-cyclopropyl-2-(4-fluorophenyl)-3-(methylcarbamoyl)-1-benzofuran-6-yl](methylsulfonyl)amino}methyl)-2-fluorophenyl]boronic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.32 _cell.angle_beta 86.64 _cell.angle_gamma 80.32 _cell.entry_id 4KHR _cell.length_a 53.353 _cell.length_b 60.74 _cell.length_c 91.985 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KHR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,N 1 1 B,G,H,I,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H25 B F2 N2 O6 S' _chem_comp.formula_weight 554.37 _chem_comp.id 1PV _chem_comp.mon_nstd_flag . _chem_comp.name '[4-({[5-cyclopropyl-2-(4-fluorophenyl)-3-(methylcarbamoyl)-1-benzofuran-6-yl](methylsulfonyl)amino}methyl)-2-fluorophenyl]boronic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GSK5852 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 1PV sing 1 n n N2 C3 1PV sing 2 n n O18 B17 1PV sing 3 n n O4 C3 1PV doub 4 n n C3 C5 1PV sing 5 n n B17 O19 1PV sing 6 n n B17 C16 1PV sing 7 n n C32 C31 1PV sing 8 n n C32 C30 1PV sing 9 n n C31 C30 1PV sing 10 n n C15 C16 1PV doub 11 n y C15 C14 1PV sing 12 n y C5 C29 1PV sing 13 n y C5 C6 1PV doub 14 n y C16 C20 1PV sing 15 n y C39 C38 1PV doub 16 n y C39 C33 1PV sing 17 n y C28 C29 1PV doub 18 n y C28 C27 1PV sing 19 n y C38 C36 1PV sing 20 n y C29 C8 1PV sing 21 n y C30 C27 1PV sing 22 n n C33 C6 1PV sing 23 n n C33 C34 1PV doub 24 n y C6 O7 1PV sing 25 n y C36 F37 1PV sing 26 n n C36 C35 1PV doub 27 n y C14 C13 1PV doub 28 n y C27 C10 1PV doub 29 n y C20 F21 1PV sing 30 n n C20 C22 1PV doub 31 n y C34 C35 1PV sing 32 n y C8 O7 1PV sing 33 n y C8 C9 1PV doub 34 n y C13 C22 1PV sing 35 n y C13 C12 1PV sing 36 n n C10 C9 1PV sing 37 n y C10 N11 1PV sing 38 n n N11 C12 1PV sing 39 n n N11 S23 1PV sing 40 n n O25 S23 1PV doub 41 n n S23 C24 1PV sing 42 n n S23 O26 1PV doub 43 n n C1 H1 1PV sing 44 n n C1 H2 1PV sing 45 n n C1 H3 1PV sing 46 n n C9 H4 1PV sing 47 n n C15 H5 1PV sing 48 n n O19 H6 1PV sing 49 n n C22 H7 1PV sing 50 n n C24 H8 1PV sing 51 n n C24 H9 1PV sing 52 n n C24 H10 1PV sing 53 n n C28 H11 1PV sing 54 n n C30 H12 1PV sing 55 n n C31 H13 1PV sing 56 n n C31 H14 1PV sing 57 n n C32 H15 1PV sing 58 n n C32 H16 1PV sing 59 n n C34 H17 1PV sing 60 n n C35 H18 1PV sing 61 n n C38 H19 1PV sing 62 n n C39 H20 1PV sing 63 n n N2 H21 1PV sing 64 n n C12 H22 1PV sing 65 n n C12 H23 1PV sing 66 n n O18 H24 1PV sing 67 n n C14 H25 1PV sing 68 n n # _atom_sites.entry_id 4KHR _atom_sites.fract_transf_matrix[1][1] 0.018743 _atom_sites.fract_transf_matrix[1][2] -0.003198 _atom_sites.fract_transf_matrix[1][3] -0.001094 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016702 _atom_sites.fract_transf_matrix[2][3] -0.000035 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 601 3 SO4 SO4 . D 2 SO4 A 1 602 5 SO4 SO4 . E 2 SO4 A 1 603 9 SO4 SO4 . F 3 1PV A 1 604 1 1PV 1PV . G 2 SO4 B 1 601 1 SO4 SO4 . H 2 SO4 B 1 602 2 SO4 SO4 . I 2 SO4 B 1 603 4 SO4 SO4 . J 2 SO4 B 1 604 6 SO4 SO4 . K 2 SO4 B 1 605 7 SO4 SO4 . L 2 SO4 B 1 606 8 SO4 SO4 . M 2 SO4 B 1 607 10 SO4 SO4 . N 4 HOH A 1 701 7 HOH HOH . N 4 HOH A 2 702 10 HOH HOH . N 4 HOH A 3 703 17 HOH HOH . N 4 HOH A 4 704 18 HOH HOH . N 4 HOH A 5 705 21 HOH HOH . N 4 HOH A 6 706 28 HOH HOH . N 4 HOH A 7 707 29 HOH HOH . N 4 HOH A 8 708 35 HOH HOH . N 4 HOH A 9 709 36 HOH HOH . N 4 HOH A 10 710 37 HOH HOH . N 4 HOH A 11 711 41 HOH HOH . N 4 HOH A 12 712 44 HOH HOH . N 4 HOH A 13 713 49 HOH HOH . N 4 HOH A 14 714 58 HOH HOH . N 4 HOH A 15 715 63 HOH HOH . N 4 HOH A 16 716 65 HOH HOH . N 4 HOH A 17 717 67 HOH HOH . N 4 HOH A 18 718 73 HOH HOH . N 4 HOH A 19 719 79 HOH HOH . N 4 HOH A 20 720 99 HOH HOH . N 4 HOH A 21 721 101 HOH HOH . N 4 HOH A 22 722 105 HOH HOH . N 4 HOH A 23 723 108 HOH HOH . N 4 HOH A 24 724 109 HOH HOH . N 4 HOH A 25 725 110 HOH HOH . N 4 HOH A 26 726 111 HOH HOH . N 4 HOH A 27 727 113 HOH HOH . N 4 HOH A 28 728 124 HOH HOH . N 4 HOH A 29 729 127 HOH HOH . N 4 HOH A 30 730 130 HOH HOH . N 4 HOH A 31 731 141 HOH HOH . N 4 HOH A 32 732 145 HOH HOH . N 4 HOH A 33 733 148 HOH HOH . N 4 HOH A 34 734 154 HOH HOH . N 4 HOH A 35 735 158 HOH HOH . N 4 HOH A 36 736 162 HOH HOH . N 4 HOH A 37 737 164 HOH HOH . N 4 HOH A 38 738 167 HOH HOH . N 4 HOH A 39 739 177 HOH HOH . N 4 HOH A 40 740 180 HOH HOH . N 4 HOH A 41 741 181 HOH HOH . N 4 HOH A 42 742 182 HOH HOH . N 4 HOH A 43 743 183 HOH HOH . N 4 HOH A 44 744 184 HOH HOH . N 4 HOH A 45 745 185 HOH HOH . N 4 HOH A 46 746 186 HOH HOH . N 4 HOH A 47 747 187 HOH HOH . N 4 HOH A 48 748 189 HOH HOH . N 4 HOH A 49 749 190 HOH HOH . N 4 HOH A 50 750 192 HOH HOH . N 4 HOH A 51 751 193 HOH HOH . O 4 HOH B 1 701 1 HOH HOH . O 4 HOH B 2 702 3 HOH HOH . O 4 HOH B 3 703 4 HOH HOH . O 4 HOH B 4 704 5 HOH HOH . O 4 HOH B 5 705 8 HOH HOH . O 4 HOH B 6 706 12 HOH HOH . O 4 HOH B 7 707 13 HOH HOH . O 4 HOH B 8 708 14 HOH HOH . O 4 HOH B 9 709 15 HOH HOH . O 4 HOH B 10 710 19 HOH HOH . O 4 HOH B 11 711 22 HOH HOH . O 4 HOH B 12 712 24 HOH HOH . O 4 HOH B 13 713 32 HOH HOH . O 4 HOH B 14 714 34 HOH HOH . O 4 HOH B 15 715 50 HOH HOH . O 4 HOH B 16 716 66 HOH HOH . O 4 HOH B 17 717 70 HOH HOH . O 4 HOH B 18 718 72 HOH HOH . O 4 HOH B 19 719 75 HOH HOH . O 4 HOH B 20 720 83 HOH HOH . O 4 HOH B 21 721 88 HOH HOH . O 4 HOH B 22 722 94 HOH HOH . O 4 HOH B 23 723 95 HOH HOH . O 4 HOH B 24 724 98 HOH HOH . O 4 HOH B 25 725 102 HOH HOH . O 4 HOH B 26 726 104 HOH HOH . O 4 HOH B 27 727 114 HOH HOH . O 4 HOH B 28 728 118 HOH HOH . O 4 HOH B 29 729 119 HOH HOH . O 4 HOH B 30 730 123 HOH HOH . O 4 HOH B 31 731 128 HOH HOH . O 4 HOH B 32 732 137 HOH HOH . O 4 HOH B 33 733 138 HOH HOH . O 4 HOH B 34 734 140 HOH HOH . O 4 HOH B 35 735 142 HOH HOH . O 4 HOH B 36 736 147 HOH HOH . O 4 HOH B 37 737 149 HOH HOH . O 4 HOH B 38 738 150 HOH HOH . O 4 HOH B 39 739 155 HOH HOH . O 4 HOH B 40 740 156 HOH HOH . O 4 HOH B 41 741 161 HOH HOH . O 4 HOH B 42 742 163 HOH HOH . O 4 HOH B 43 743 165 HOH HOH . O 4 HOH B 44 744 172 HOH HOH . O 4 HOH B 45 745 173 HOH HOH . O 4 HOH B 46 746 175 HOH HOH . O 4 HOH B 47 747 178 HOH HOH . O 4 HOH B 48 748 179 HOH HOH . O 4 HOH B 49 749 188 HOH HOH . O 4 HOH B 50 750 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 1PV . . . F 3 -9.744 -10.933 32.216 1 36.96 ? C1 1PV 604 A 1 HETATM 2 C C3 1PV . . . F 3 -8.231 -12.747 31.567 1 39.08 ? C3 1PV 604 A 1 HETATM 3 C C5 1PV . . . F 3 -8.01 -14.218 31.445 1 38.5 ? C5 1PV 604 A 1 HETATM 4 C C6 1PV . . . F 3 -8.311 -15.322 32.399 1 39.02 ? C6 1PV 604 A 1 HETATM 5 C C8 1PV . . . F 3 -7.414 -16.165 30.53 1 39.07 ? C8 1PV 604 A 1 HETATM 6 C C9 1PV . . . F 3 -6.945 -17.102 29.637 1 38.8 ? C9 1PV 604 A 1 HETATM 7 C C13 1PV . . . F 3 -7.901 -17.677 25.827 1 40.77 ? C13 1PV 604 A 1 HETATM 8 C C15 1PV . . . F 3 -10.186 -17.026 25.396 1 43.34 ? C15 1PV 604 A 1 HETATM 9 C C16 1PV . . . F 3 -9.8 -16.292 24.272 1 43.45 ? C16 1PV 604 A 1 HETATM 10 O O19 1PV . . . F 3 -12.081 -16.316 22.89 1 44.32 ? O19 1PV 604 A 1 HETATM 11 C C20 1PV . . . F 3 -8.454 -16.281 23.916 1 43.42 ? C20 1PV 604 A 1 HETATM 12 C C22 1PV . . . F 3 -7.515 -16.977 24.687 1 42.07 ? C22 1PV 604 A 1 HETATM 13 C C24 1PV . . . F 3 -3.872 -18.304 26.23 1 37.12 ? C24 1PV 604 A 1 HETATM 14 C C27 1PV . . . F 3 -6.51 -15.322 28.05 1 39.01 ? C27 1PV 604 A 1 HETATM 15 C C28 1PV . . . F 3 -6.998 -14.377 28.97 1 38.56 ? C28 1PV 604 A 1 HETATM 16 C C29 1PV . . . F 3 -7.445 -14.831 30.205 1 38.73 ? C29 1PV 604 A 1 HETATM 17 C C30 1PV . . . F 3 -6.022 -14.947 26.693 1 38.96 ? C30 1PV 604 A 1 HETATM 18 C C31 1PV . . . F 3 -5.69 -13.492 26.344 1 38.72 ? C31 1PV 604 A 1 HETATM 19 C C32 1PV . . . F 3 -7.033 -14.093 25.939 1 39.15 ? C32 1PV 604 A 1 HETATM 20 C C33 1PV . . . F 3 -8.771 -15.359 33.797 1 38.81 ? C33 1PV 604 A 1 HETATM 21 C C34 1PV . . . F 3 -8.571 -14.261 34.627 1 38.97 ? C34 1PV 604 A 1 HETATM 22 C C35 1PV . . . F 3 -8.917 -14.334 35.978 1 38.72 ? C35 1PV 604 A 1 HETATM 23 C C36 1PV . . . F 3 -9.42 -15.519 36.501 1 38.97 ? C36 1PV 604 A 1 HETATM 24 F F37 1PV . . . F 3 -9.765 -15.603 37.8 1 38.31 ? F37 1PV 604 A 1 HETATM 25 C C38 1PV . . . F 3 -9.581 -16.623 35.667 1 39.67 ? C38 1PV 604 A 1 HETATM 26 C C39 1PV . . . F 3 -9.238 -16.555 34.324 1 38.77 ? C39 1PV 604 A 1 HETATM 27 O O7 1PV . . . F 3 -7.865 -16.44 31.739 1 39.52 ? O7 1PV 604 A 1 HETATM 28 O O4 1PV . . . F 3 -7.355 -11.971 31.198 1 40.11 ? O4 1PV 604 A 1 HETATM 29 N N2 1PV . . . F 3 -9.39 -12.333 32.073 1 38.38 ? N2 1PV 604 A 1 HETATM 30 C C10 1PV . . . F 3 -6.505 -16.68 28.393 1 39.36 ? C10 1PV 604 A 1 HETATM 31 N N11 1PV . . . F 3 -6.029 -17.701 27.557 1 39.39 ? N11 1PV 604 A 1 HETATM 32 S S23 1PV . . . F 3 -4.562 -18.127 27.709 1 37.72 ? S23 1PV 604 A 1 HETATM 33 O O25 1PV . . . F 3 -3.779 -17.193 28.465 1 39.1 ? O25 1PV 604 A 1 HETATM 34 O O26 1PV . . . F 3 -4.526 -19.384 28.409 1 40.06 ? O26 1PV 604 A 1 HETATM 35 C C12 1PV . . . F 3 -6.901 -18.456 26.656 1 39.91 ? C12 1PV 604 A 1 HETATM 36 F F21 1PV . . . F 3 -8.03 -15.583 22.84 1 44.99 ? F21 1PV 604 A 1 HETATM 37 B B17 1PV . . . F 3 -10.883 -15.527 23.433 1 43.5 ? B17 1PV 604 A 1 HETATM 38 O O18 1PV . . . F 3 -11.029 -13.998 23.532 1 44.38 ? O18 1PV 604 A 1 HETATM 39 C C14 1PV . . . F 3 -9.243 -17.717 26.165 1 41.76 ? C14 1PV 604 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 39 #